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Query: d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]}, from SCOP207

Results of FFAS03 search in PfamA32U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MKVEELAESISSYAVGILKEEGIEELFPPQAEAVEKVFSGKNLLLAMPTAAGKTLLAEMAMVREAIKGGKSLYVVPLRALAGEKYESFKKWEKIGLRIGISTGDYESRDEHLGDCDIIVTTSEKADSLIRNRASWIKAVSCLVVDEIHLLDSEKRGATLEILVTKMRRMNKALRVIGLSATAPNVTEIAEWLDADYYVSDWRLast
1 -24.600PF02456.15; PKG1_ADEG1/61-425; Adenovirus IVa2 protein  ali follow..  74.............................QLPSINMGKQPIIGVIYGPTGSGKSHLLRALISCNMLDPETVIFITPEKNMIPPIEQTSWNLQREDGTIAPKTSTFRPEEEATAPEHLNIDHPDNI-------KVSKRGPVAIIMDECMDKLCSGSSVSVLFHALPSKLFARSAHCTAFYIFVGNVPTLKVNAKMHILSCH.. 266
2 -23.800PF00270.29; SGS1_YEAST/680-854; DEAD/DEAH box helicase  ali follow..  21  4.............................QLEAVNATLQGKDVFVLMPTGGGKSLCYQLAVVKSGKTHGTTIVISPLISLMQDQVEHLLN---KNIKASMFSSRGTAEQRR-GLLDLVYISPEMISASEQSRLYADGKLARIVVDEAHCVSNWGHDFRPDY-LKFFKREYPDIPMIALTATASE.................. 169
3 -21.800PF04851.15; Q893B7_CLOTE/244-395; Type III restriction enzyme, res subunit  ali follow..  20  5..........................NKMQVEAIQGLERQDRGLLISATGTGKTYLSAFELRN--YNPKRALFIVHREQIAKQALNSFMNVFGDTRSMGILSGTSKD-----VDKDFIFCTIQTLSKEEVLQYFDKNEFDYIIIDEVHKAGANSYQKIVNYFNPKF--------LLGMTAT..................... 149
4 -21.100PF07652.14; Q32ZD8_9FLAV/1675-1822; Flavivirus DEAD domain  ali follow..  13  1....................................FKKKQLIVLDPHPGAGKTRVLPEFIRQAVERRLWTLALAPTRVVAAEMAEALNG-LPVRYLTPAVIQQHT------GKEIVDLMCHATFTMRLLS-GGRVPNYNMFIMDEAHFTDPSS---IAARGYISTKVDMGEASAVFMTATPPGSR................ 140
5 -17.100PF02399.15; OBP_VZVD/13-828; Origin of replication binding protein  ali follow..  16  47......................................TRPVTVVRAPMGSGKTTALLEWLQHALKADISVLVVSCRRSFTQTLIQRFNDAGLSGFV------TYLTSETYIMGFKRLIVQ---LESLHRVSSEAIDSYDVLILDEVMSVIGQLYSPTMAVDSLLYRLLNRCSQIIAMDATVNS.................. 187
6 -14.600PF14617.6; Q7SEP8_NEUCR/3-248; U3-containing 90S pre-ribosomal complex subunit  ali follow..  13  41.AFERMDGQLLADHIAQKVTRFGTDLSSVELS--DLYISANAIKDTTSFQKPRNKDNLPDFLEEFSENPATLVVAGAGLRAADLVRSLRKFQTKGNSVAKLFAKHFKVEEQVSRTGIAVGTPQRLIDLIENESLSLDSLKRIVVDASHI--DQKKRGIADM......................................... 214
7 -13.400PF18766.1; G4L9K0_TETHN/255-496; SWI2/SNF2 ATPase  ali follow..  17  2.............................QYFAVHKAVVGRGGVFWHTQGSGKSLSMVFFTIQKILNLPTVVILTDRNDLDEQLYAQFAKCTNFLRQEPVQASNREELKNLLDGRQIIFSTMQKFVESEEPLSERRNII--VMADEAHRGVDTKTGQIKFGAARRVRDSLPNASYIGFTGT..................... 172
8 -13.200PF13401.6; B2UJB3_RALPJ/42-210; AAA domain  ali follow..  18  3......................................QESILLVCGPTGAGKTTLAKFMVENAHSQSHAAIYVAPASGETKFSWRLFRILNQLGDDLDSPKVAYGVDSLSGRLVRPRGTSGNSLAALRTAVERGLRAVQFMVIDEAHIFRDTQRNSKLEVQLDTLKSLVNECGTQIVLVGSYDLYHL.............. 168
9 -13.000PF05894.12; A0A0G0ERS5_9BACT/5-334; Podovirus DNA encapsidation protein (Gp16)  ali follow..  16  9.................................INRLLSFKASVVVGMRGGGKTYAKKRCIIDFKEKGQQFVWLRRYDSELFEAKKTFAIRNDPDLNRKYPDMKLHIIGNKVYIDDEVAGYFIALTLAHKFKSSDFPLVVNIVYDEFIPDDSSRLGYLLYNLIETIQRQRDTTRVIMIA----NAISFGNPYFIAWRVKP.. 182
10 -12.400PF05876.12; Q8ZQH1_SALTY/36-646; Phage terminase large subunit (GpA)  ali follow..  15  15.......................DTLTPYMNEAINTLSKRDAVIFAGPARTGKTLGLIDGWIVYGIVCADMLVVQMTETKAREHSKTFHHSPEVRKRLSPSRNDNNVHDKMFRDGSFLKIGWPSITVFSSS------DYKRVALTDYDRFPENGEGDGFSLASKRTTTFMSAGMTLAESSPGREITDV.............. 184
11 -12.400PF06862.12; UTP25_SCHPO/187-651; Utp25, U3 small nucleolar RNA-associated SSU processome protein 25  ali follow..  14  1..........................TSMQIELAKAMFNYQDVFFTNMSMKSHKLGTSLLALHALNHRPKVLILLPTRNSAFEFINLLISYSGTN-NRKRFDNEFSIEKEVISNSDIIVASPLGLRLAIGNKGDYLSSIEIAMVDQAHAL--------VMQNWEHIECIFDELNGLPKEAHGCDFSRVRPW........... 231
12 -12.100PF13872.6; E4XRW5_OIKDI/32-343; P-loop containing NTP hydrolase pore-1  ali follow..  17  34.......................GKLSDLQLEAVVYAKERKGFLLGDGAGVGKRSISGIIYDNWLNGRKKAIWLSVSNDLRHDSLRDLNDIGADMIKVHPLHNGRVQEGVIFGTYASLIGERHQAGATTKRAAQATRL-GCIVFDECHKAKNNGKPSKTGTTVLELQRQLKQARIVYASAT..................... 229
13 -12.000PF02562.16; A0LK93_SYNFM/124-328; PhoH-like protein  ali follow..  17  2......................ITPKSVKQKEYIEAIRHYDIVFGVGPAGTGKTYLAMAMAVAAMTKDRRIVLVRPAVEAGEK----------LGFLPGDLAEKVNPYLRPLYDALHDMMDFERATGLLQRGAIEVAPLAFMTLNDAFVILDEAQNTTTEQMKMFLTRLGLGSKAV.......................... 150
14 -11.700PF12340.8; E9E746_METAQ/2076-2300; Protein of unknown function (DUF3638 topsan)  ali follow..  15  14................LLEIDNNILIRPAQVEVAKAIISNQNSVLQMNMGKGKTSVVMPMAALILADKTKLCRIIVPKALLLQTAQVIQS-RRSPSDAATLSRYRAIHQEMQVRGGVMICLPGHILSFMVETQHWLDTTCRDILDESDLTGHPYRWLVVEELLSLVEKHALSLQ............................ 225
15 -11.400PF01695.17; Y4IQ_SINFN/60-238; IstB-like ATP binding protein  ali follow..  17  45....................................LAKGANILLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQK-------------------------------------LQVARRELQLESAIAKLDKFDLLILDDLAYKDQAETSVLFELISARYER----------SIMITANQPFGEW........... 155
16 -11.300PF01443.18; RDRP_TMV/829-1085; Viral (Superfamily 1) RNA helicase  ali follow..  17  1..........................................VLVDGVPGCGKT-----KEILSRVNFDEDLILVPGKQAAEMIRRRANS------------------SGIIVATKDNVKTVDSF--MMNFGKSTRCQFKRLFIDEGLMLHTG----CVNFLVAMSL--CEIAYVYGDTQQIPYIN................ 113
17 -10.900PF00176.23; RAD54_SCHPO/267-575; SNF2 family N-terminal domain  ali follow..  15  1.................HQIEGVKFLYKCVTGRIDR--CANGCIMADEMGLGKTLQCIALLWTLLKQSEKAIITCPSSLVKNWANELVKWLGKDAITPFILDGKSSKQELIMATRPVLIASYETLRSYVEHLNN--AEIGMLLCDEGHRLKNSD-----SLTFTALDKLNVQRRVILSGTPIQNYFSLLNFANPGLLGS... 197
18 -10.900PF13604.6; Q3L956_RHOE4/579-769; AAA domain  ali follow..  18  2.........................LGNDQIAMIEHFLTAKTKVAVGAAGAGKTTAAKVVARAWEQTNGKVIALGPSAKAADVL----------------------------AEIDVEGRTIADITRDQHGLATGIEKGDLLLVDEAGMASARNLADLTRIA-AVVRLLGDPLQLASVES--GVLRDLAERTDAPFLSKIHR 156
19 -10.900PF04466.13; C4K6U5_HAMD5/5-206; Phage terminase large subunit  ali follow..  10  1.......................................KRIKVYFGGRGGMKTVSFAKIALITASMHKRRFLCL-MNSIEDSVHAVLQAEVE-TLGLQNRFRILNTYIEGINDSIFKYGQLARNIASIKSKHD----FDVAWVEEAETVSEKS----LDTLIPTIRKPGSELWFS-------NPAEEDGAVYKRFVKPY.. 148
20 -10.500PF03266.15; NTPTH_METAC/3-167; NTPase  ali follow..  13  1.........................................RIAVTGSPGVGKSTVVAKTAEKLAEKPGFKIGGIRTAEIRKEGHREGFSIRDLATGKTGILSHVKGSGPRLGKYHVNLDDLERIGANAVRNA---LACDLVVIDEIGPMELISQSSAVEEVLESDKPVLAVLHFEVLTVDKGNRDELPEKI.......... 164
21 -10.500PF09848.9; A1A222_BIFAA/236-699; Uncharacterized conserved protein (DUF2075 topsan)  ali follow..  14  1.......................................SRLIFVQGVAGTGKTVLLSHLFYRIATEMDINGRINDEDDEDILETDSSLKISKEDRRKAYILVNHNQQMHVYNQIASKLGLQKHFGEVALKPSQFINRFDVVLVDEAHLLLTQGD----NMLHDLLRRAKVVIAVFDPNQILQTSQR............... 168
22 -10.200PF07088.11; GVPD1_HALSA/23-536; GvpD gas vesicle protein  ali follow..  16  9......................................AGETLLINGAPGTGKTLFT-IRGLDVLDRDSDVLYV----STRVDQETVHEMYFADHSSLDTTA-DLFQDPFELPLDVDVPFEKLDLDSLLEWIQEINAATTTIAFDSWELIDPPDIKTVTNQLAVLAREENIRLMLVTETAAPSSLEYIVDGV.......... 169
23 -10.000PF05621.11; B7J739_ACIF2/21-211; Bacterial TniB protein  ali follow..  14  34......................................RMPNLLIVGDSNNGKTTVIRRFQKLHGEGVNEDAEPVPVIVSEAPPSADEKGLYI----------------AILERFWTPYRATDSASKLRYQVVHLMRDVRILVIDEFHSL--TGTVTKQREVMNAIKLLCNELAIPIVGVGIREAVRVLH............ 170
24 -9.790PF07517.14; A4N1I5_HAEIF/4-400; SecA DEAD-like domain  ali follow..  20  76.........................MRHFDVQLIGGMVLTNRCIAEMRTGEGKTLTATLPCYLIALEGKGVHVVTVNDYLARRDAETNRPFEFLGMSVGVNIPGLSPEEKRAAAADITYATNSELDNLAHSKEERFQRLGYALVDEVDILIDEARTPLI........................................... 219
25 -9.780PF05127.14; A2EVG1_TRIVA/302-494; Helicase  ali follow..  14  2............................................ITAARGRGKSAAIGLSLAAALALGYSNIFVAPSIANLTALFEGFREGESEDFEVVKSNPTSSKERPYVTRVNVHLSHGRR--YVRPNMTQYLGQCEILAIDEVDGYEGTGRALSLKLFKEFQRTMKSRFTQTTLTKPIAEGDPIEAWLHNLLL..... 191
26 -9.650PF13245.6; B1YJE6_EXIS2/332-475; AAA domain  ali follow..  15  1.............................QREAIELAVKAPLMVLTGGPGTGKTTVIKGILHALQEIHDWPLEKSQVKSGEVYPYVLVAPTGRAAKRLSEATDVPAMTIHRLLKYDGTNFQLDEDQPI---------AGKVLIIDESSMID-------IYLLSSLLRAVPNGMKILFVG....................... 134
27 -9.440PF13481.6; B2JV40_PARP8/220-401; AAA domain  ali follow..  11  6...............RVLSGAAITSQPIIDDLVDDVIPAHAVGAVWGASAAAKSFLVLDLAAHDVFEPVPVLLVS---------LEGNNGLPRRYLAWEKHNGRPVPARLHTLTQGFSLLDPRDTDDLCEAIETCGITGGVVFIDPFALALEENSSADMGRAGAALNTLRERTGCTVI........................ 172
28 -9.320PF06745.13; O29463_ARCFU/20-274; KaiC  ali follow..  17  28...................................GIPHLAVMNITGVPDTGKSLLAEQFAITQAGSGYRVLYVTVESPANFLYTAMKERSEAMGVDFTKVESN-----VVVIDASESDELRENPKALMETMAYAIKEKKNTIIDSITGLYEHKEMMARQIVRQFFNFMKKYRQTGIFVSQKRSAQ................ 175

FFAS is supported by the NIH grant R01-GM087218-01
1 4 6 2 1 7   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Pawlowski K, Jaroszewski L, Rychlewski L, Godzik A. Sensitive sequence comparison as protein function predictor. Pac Symp Biocomput. 2000;:42-53.