current user: public
If you have questions about the server, please let us know.

Query: d3etja1 b.84.2.1 (A:277-355) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), C-domain {Escherichia coli [TaxId: 562]}, from SCOP207

Results of FFAS03 search in PfamA32U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .
# Score Template Links and tools%idFirst NNPSVMINLIGSDVNYDWLKLPLVHLHWYDKEVRPGRKVGHLNLTDSDTSRLTATLEALIPLLPPEYASGVIWAQSKFGLast
1 -37.000PF17769.1; Q15N14_PSEA6/301-353; Phosphoribosylaminoimidazole carboxylase C-terminal domain  ali follow..  46  1...SVMLNVIGCDLPKDMLSVPRTHLHGYMKTPRAKRKMGHINITGNDYAELGEA........................ 53
2 -8.710PF18603.1; A0A011NX54_9PROT/320-396; L-amino acid ligase C-terminal domain 2  ali follow..  22  6.PRGTIAEIGGVDSAAAVPGVAAVHLNL-GDEVGPDRRPGYVVTLGDTATEVIAIARRAIALLR............... 73
3 -6.600PF10252.9; B2AKR9_PODAN/94-186; Casein kinase substrate phosphoprotein PP28  ali follow..  17  56........................KLHEQGKTDQAKADLARLREIRAKREEEAARRLA..................... 89
4 -5.860PF17311.2; A3N2M3_ACTP2/27-184; Family of unknown function (DUF5358 topsan)  ali follow..  10  58....PLEEIIGEQYVKIIQDDEKSMGYAQYLFKKFRDNQEFEPLADKQCLVLREKAKNDLAVVKGQYKSGMVEETKS.. 130
5 -5.820PF03306.13; X4Z7R1_9BACL/6-224; Alpha-acetolactate decarboxylase  ali follow..  14  151.......VIAGTPAFAQGIGVAGYHLHFINEARNGG---GHVDFVLEGGDISICSGRDFQLALPHDDM........... 211
6 -5.760PF01986.16; Q0W2V8_METAR/27-116; Domain of unknown function DUF123 topsan  ali follow..  11  10........YTGSALGSGGFS--RIKRHLDVAAGKNSTRKWHIDYLLPHSDVLQTVTSVRPECSVAAGIDAVLPRIAGFG 78
7 -5.560PF06658.12; I2FPS2_USTH4/48-177; Protein of unknown function (DUF1168 topsan)  ali follow..  20  19.PRDVMKNVSGSS-----AGAGSGEFHVYKQQRR--REYERIQLMEEQNKKLTEQEEFDRKRAELERKDEAKTEKNR.. 87
8 -5.480PF17854.1; A0A109CNQ4_9BACT/262-361; FtsK alpha domain  ali follow..  21  47.....................PGPVITMYEFEPAPGVKISKVVALSDDLGRAMGGIKVRVSLIPGKTPIGIE....... 97
9 -5.470PF04351.13; Q2S9Q3_HAHCH/28-176; Pilus assembly protein, PilP  ali follow..  15  80.....MVGTIGENTLYALVNDGQGGIHRVRKGQYMGKNHGRVVAISDVGIDIVEIVSD..................... 135
10 -5.190PF11618.8; F6SS07_XENTR/602-743; First C2 domain of RPGR-interacting protein 1  ali follow..  6  62...TSQYRIRVDDLFLQYIQKSTASLEVHIALGTDYKTVALCQLRFHEILEKSGRIFSASMLVGVQGDTESYGTVD... 134
FFAS is supported by the NIH grant R01-GM087218-01
1 4 7 7 0 3   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster
Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Zhang B, Jaroszewski L, Rychlewski L, Godzik A. Similarities and differences between nonhomologous proteins with similar folds: evaluation of threading strategies. Fold Des. 1997;2(5):307-17.