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current user: public |
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| Query: d4i0va_ a.1.1.1 (A:) automated matches {Synechococcus sp. [TaxId: 32049]}, from SCOP207 |
| . 10 . 20 . 30 . 40 . 50 . 60 . 70 . 80 . 90 . 100 . 110 . 120 | |||||||
| # | Score | Template | Links and tools | %id | First | ASLYEKLGGAAAVDLAVEKFYGKVLADERVNRFFVNTDMAKQKQHQKDFMTYAFGGTDRFPGRSMRAAHQDLVENAGLTDVHFDAIAENLVLTLQELNVSQDLIDEVVTIVGSVQHRNDVLNR | Last |
| 1 | -58.100 | PF01152.21; Q7CX73_AGRFC/7-127; Bacterial-like globin | ali follow.. | 17 | 1 | .TLYEAIGGDATVRALTRRFYELMDTLPEAARCRAPADLSGSEAKFYDYLTGYLGGPPVYVEKHGHPMLRRRHFVAPIGPAERDEWLLCFRRAMDETIENAKLREIIWAPVERLAF--HMQN. | 121 |
| 2 | -9.940 | PF11563.8; F0XJU9_GROCL/20-199; Protoglobin | ali follow.. | 12 | 30 | .........KVLIPAVTNIVYRKLLQYDITARAFETRSILHRKMFLRAYLARLCSDPSQMTFWEYLDKVGMMHVGLGRAHPHIGATLSLIQDVLTEA--MGRKMGLVKALGKVIWIQNDLFAK | 172 |
| 3 | -8.150 | PF02211.15; Q2K6I5_RHIEC/1-218; Nitrile hydratase beta subunit | ali follow.. | 11 | 7 | ......LGGQMGFGPVAPEKDEPCFHADWEKRALG--------------ITLSCGAFGAWTIDESRHARENIPPADYLAASYYEIWIRGVETLLARHGF---TREELLSGHKLQDGAAP.... | 103 |
| 4 | -7.510 | PF06648.11; Q287H1_NPVAS/7-128; Protein of unknown function (DUF1160 topsan) | ali follow.. | 9 | 37 | ..........HKFTQIIKMFIRREISVQDVCDILDAANGIKLTHGQIEYFCSQV-----YYNSHIIHILRSFINFQHLNDEEISDLSQFLVKEIDNAIM........................ | 120 |
| 5 | -6.710 | PF14619.6; M0T3J0_MUSAM/205-294; Snf2-ATP coupling, chromatin remodelling complex | ali follow.. | 13 | 8 | .AAWQRLIQGSTDGLNPLAMPSRLVTDEDLKPFYKAMMIHESPNVSMKRKSEYLGGLDTQQYGRGKRAREVRSYGDQWTEEEFE....................................... | 90 |
| 6 | -6.320 | PF02881.19; A1SZY9_PSYIN/5-82; SRP54-type protein, helical bundle domain | ali follow.. | 11 | 2 | .............................................................TERLSKTLKNVSGKGRLTEDNIKDTLREVRMALLEADVALPVVRDFIEAIKTRSVGQDVAK. | 62 |
| 7 | -6.150 | PF02444.16; ORF3_HEVCH/1-114; Hepatitis E virus ORF-2 (Putative capsid protein) | ali follow.. | 14 | 29 | SRLAAAVGGAAAVPAVVSGVTGLILS-PSQSPIFIQPTPSPPMSPLRPGLDLVFANPPDHSAPLGVTRPSAPPLPHVVDLPQL........................................ | 110 |
| 8 | -6.140 | PF18137.1; A0A137QR21_9AGAR/477-667; Origin recognition complex winged helix C-terminal | ali follow.. | 12 | 72 | .TRYLDSGKLINIHDWYESFRVCLDAQRAERLSLKTRSKSKSKGKGKGKAKSTAKKKIKAEKAEEGGEELDMKGEEYEEPDE-QEVQARFMRALHEL--------DYLGFVKHTGRRVEHVVR | 188 |
| 9 | -5.660 | PF05712.13; B0DA97_LACBS/130-312; MRG | ali follow.. | 11 | 43 | .....SLPRSPTVAEILTSFSDHVLKTKPPHIREPGLVLPTILSGLQCYFDRALGANLLYRFERPQVAGQEKEMSQIYGAEHLLRMLVSLPNMIASSSLDAESVHLVRDYVSEL......... | 165 |
| 10 | -5.610 | PF07128.12; Q7ARC0_YERPE/25-161; Protein of unknown function (DUF1380 topsan) | ali follow.. | 13 | 10 | RLLREQYPAETPLNLIV--------SPADIEALADGMEYAVSEQDTRAVLARM------------DAIPEEQQLESGVSAGAVMDLIEQVKEAVPAVMVPADLLETLLTTAEQALWHRE.... | 109 |
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9. Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018. Jaroszewski L, Rychlewski L, Godzik A. Improving the quality of twilight-zone alignments. Protein Sci. 2000 Aug;9(8):1487-96. |