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Query: d1asha_ a.1.1.2 (A:) Ascaris hemoglobin, domain 1 {Pig roundworm (Ascaris suum) [TaxId: 6253]}, from SCOP207

Results of FFAS03 search in SCOP207
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst ANKTRELCMKSLEHAKVDTSNEARQDGIDLYKHMFENYPPLRKYFKSREEYTAEDVQNDPFFAKQGQKILLACHVLCATYDDRETFNAYTRELLDRHARDHVHMPPEVWTDFWKLFEEYLGKKTTLDEPTKQAWHEIGREFAKEINKLast
1 -67.800d1asha_ a.1.1.2 (A:) Ascaris hemoglobin, domain 1 {Pig roundworm (Ascaris suum) [TaxId: 6253]}  ali model 3D-neighbors  100  1ANKTRELCMKSLEHAKVDTSNEARQDGIDLYKHMFENYPPLRKYFKSREEYTAEDVQNDPFFAKQGQKILLACHVLCATYDDRETFNAYTRELLDRHARDHVHMPPEVWTDFWKLFEEYLGKKTTLDEPTKQAWHEIGREFAKEINK 147
2 -56.500d2wtga_ a.1.1.0 (A:) automated matches {Nematode (Caenorhabditis elegans) [TaxId: 6239]}  ali model 3D-neighbors follow..  39  4RQEISDLCVKSLEGRMVGTEAQNIENGNAFYRYFFTNFPDLRVYFKGAEKYTADDVKKSERFDKQGQRILLACHLLANVYTNEEVFKGYVRETINRHRIYKMDPAL--WMAFFTVFTGYLESVGSLNDQQKAAWMALGKEFNAESQT 148
3 -55.500d1mbaa_ a.1.1.2 (A:) Myoglobin {Slug sea hare (Aplysia limacina) [TaxId: 6502]}  ali model 3D-neighbors follow..  12  3SAAEADLAGKSWAPVF----ANKNANGLDFLVALFEKFPDSANFFADFKGKSVADIKASPKLRDVSSRIFTRLNEFVNNAANAGKMSAMLSQFAKEHVGFGVGSAQF--ENVRSMFPGFVASVAAPPAGADAAWTKLFGLIIDALKA 143
4 -54.700d3pt8a_ a.1.1.0 (A:) automated matches {Clam (Lucina pectinata) [TaxId: 244486]}  ali model 3D-neighbors follow..  14  4TNPQKAAIRSSWSKFM----DNGVSNGQGFYMDLFKAHPETLTPFKSFGGLTLAQLQDNPKMKAQSLVFCNGMSSFVDHLDDNDMLVVLIQKMAKLHNNRGIRASDL--RTAYDILIHYMEDHNHMVGGAKDAWEVFVGFICKTLGD 145
5 -53.100d1x3ka_ a.1.1.0 (A:) automated matches {Tokunagayusurika akamusi [TaxId: 28383]}  ali model 3D-neighbors follow..  10  6SDSEEKLVRDAWAPIH----GDLQGTANTVFYNYLKKYPSNQDKFETLKGHPLDEVKDTANFKLIAGRIFTIFDNCVKNVGNDKGFQKVIADMSGPHVARPITHGSY--NDLRGVIYDSMH----LDSTHGAAWNKMMDNFFYVFYE 142
6 -52.500d2c0ka_ a.1.1.0 (A:) automated matches {Gasterophilus intestinalis [TaxId: 84525]}  ali model 3D-neighbors follow..  15  2NSEEVNDIKRTWEVVA----AKMTEAGVEMLKRYFKKYPHNLNHFPWFKEIPFDDLPENARFKTHGTRILRQVDEGVKALSGDKKFDDVWKKLAQTHHEKKVERRSY--NELKDIIIEVVCSCVKLNEKQVHAYHKFFDRAYDIAFA 145
7 -52.300d2bk9a_ a.1.1.0 (A:) automated matches {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}  ali model 3D-neighbors follow..  14  2NSDEVQLIKKTWEIPV----ATPTDSGAAILTQFFNRFPSNLEKFP-FRDVPLEELSGNARFRAHAGRIIRVFDESIQVLGDLEKLDEIWTKIAVSHIPRTVSKESY--NQLKGVILDVLTAASSLDESQAATWAKLVDHVYAIIFK 144
8 -51.500d1itha_ a.1.1.2 (A:) Hemoglobin {Innkeeper worm (Urechis caupo) [TaxId: 6431]}  ali model 3D-neighbors follow..  9  3TAAQIKAIQDHWFLN---IKGCLQAAADSIFFKYLTAYPGDLAFFHKFSSVPLYGLRSNPAYKAQTLTVINYLDKVVDALGGN--AGALMKAKVPSHDAMGITPKHF--GQLLKLVGGVFQEEFSADPTTVAAWGDAAGVLVAAMK. 141
9 -51.200d1q1fa_ a.1.1.2 (A:) Neuroglobin {Mouse (Mus musculus) [TaxId: 10090]}  ali model 3D-neighbors follow..  18  1.RPESELIRQSWRVVS----RSPLEHGTVLFARLFALEPSLLPLFQYNQFSSPEDSLSSPEFLDHIRKVMLVIDAAVTNVEDLSSLEEYLTSLGRKHRAVGVRLSSFVGESLLYMLEKSL--GPDFTPATRTAWSRLYGAVVQAMSR 144
10 -50.500d1hlba_ a.1.1.2 (A:) Hemoglobin, different isoforms {Caudina arenicola, also known as Molpadia arenicola [TaxId: 7698]}  ali model 3D-neighbors follow..  10  13TLAQKKIVRKTWHQLM----RNKTSFVTDVFIRIFAYDPSAQNKFPQMAGMSASQLRSSRQMQAHAIRVSSIMSEYVEELDS-DILPELLATLARTHDLNKVGADHYFAKVLMEALQAEL--GSDFNEKTRDAWAKAFSVVQAVLLV 154
11 -50.400d1h97a_ a.1.1.2 (A:) Trematode hemoglobin/myoglobin {Paramphistomum epiclitum [TaxId: 54403]}  ali model 3D-neighbors follow..  15  3TKHEQDILLKELGPH-VDTPAHIVETGLGAYHALFTAHPQYISHFSRLEGHTIENVMQSEGIKHYARTLTEAIVHMLKEISNDAEVKKIAAQYGKDHTSRKVTKDEFGEPIFTKYFQNLVKDAEG-KAAVEKFLKHVFPMMAAEI.. 147
12 -49.800d3g46a_ a.1.1.2 (A:) Hemoglobin I {Ark clam (Scapharca inaequivalvis) [TaxId: 6561]}  ali model 3D-neighbors follow..  9  11TADVKKDLRDSWKVIG----SDKKGNGVALMTTLFADNQETIGYFKRLGDV--SQGMANDKLRGHSITLMYALQNFIDQLDNPDDLVCVVEKFAVNHITRKISAAEF--GKINGPIKKVLA-SKNFGDKYANAWAKLVAVVQAAL.. 146
13 -49.400d2zs0b_ a.1.1.0 (B:) automated matches {Oligobrachia mashikoi [TaxId: 55676]}  ali model 3D-neighbors follow..  15  3TSLNRLLVKRQWAEAY-GEGTNRELLGNRIWEDLFANMPDARGLFSRVN----GNDIDSSEFQAHSLRVLGGLDMCVASLDDVPVLNALLARLNSQHDSRGIPAAGY--PAFVASAISAVRATVGARSFDNDAWNSCMNQIVSGIS. 141
14 -49.200d1x46a_ a.1.1.0 (A:) automated matches {Tokunagayusurika akamusi [TaxId: 28383]}  ali model 3D-neighbors follow..  15  8EAGDIALVKSSWAQIH--------DKEVDILYNFFKSYPASQAKFSAFAGKDLESLKDTAPFALHATRIVSVINEAIALMENRPALKNVLKQQGINHKGRGVTAAHF--EEFETALEAFLESASGYNAGTKKAWDSAFNNMYSVVFP 148
15 -49.100d3qqqa_ a.1.1.2 (A:) automated matches {Trema tomentosa [TaxId: 3480]}  ali model 3D-neighbors follow..  13  3TEEQEALVVKSWAVMK----KNSAELGLKFFLKIFEIAPSAKNLFSYLKDSP-IPLEQNPKLKPHAMTVFVMTCESAVQLRKAGVRESNLKRLGAIHFKNGVVNEHFTRFALLETIKEAV--PEMWSPEMKNAWGEAYDQLVAAIKS 147
16 -48.700d1b0ba_ a.1.1.2 (A:) Hemoglobin I {Clam (Lucina pectinata) [TaxId: 244486]}  ali model 3D-neighbors follow..  13  3SAAQKDNVKSSWAKAS----AAWGTAGPEFFMALFDAHDDVFAKFSGFSGAAKGTVKNTPEMAAQAQSFKGLVSNWVDNLDNAGALEGQCKTFAANHKARGISAGQLAFKVLAGFMKSYGGD--------EGAWTAVAGALMGMIRP 140
17 -48.100d2dc3a_ a.1.1.2 (A:) Cytoglobin {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  12  4SEAERKAVQAMWARLY----ANCEDVGVAILVRFFVNFPSAKQYFSQFKHMEDLEMERSPQLRKHACRVMGALNTVVENLHDPDKVSSVLALVGKAHAKHKVEPVYFLSGVILEVVAEEF--ASDFPPETQRAWAKLRGLIYSHVTA 148
18 -47.900d4hswa_ a.1.1.2 (A:) Dehaloperoxidase {Amphitrite ornata [TaxId: 129555]}  ali model 3D-neighbors follow..  13  2.......FKQDIATIR----GDLRTYAQDIFLAFLNKYPDERRYFKNYVGKSDQELKSMAKFGDHTEKVFNLMMEVADRATDCVPLASDANTLVQMKQHSSLTTGNF--EKFFVALVEYMRA--SGQSFDSQSWDRFGKNLVSALSS 133
19 -47.700d2zs0a_ a.1.1.0 (A:) automated matches {Oligobrachia mashikoi [TaxId: 55676]}  ali model 3D-neighbors follow..  18  3NRLEQILVKTQWAQSYG-EAENRAAFSRDLFSELFNIQGSSRALFSGVG----VDDMNSAAFTAHCLRVTGALNRLISQLDQQATINADLAHLAGQHASRNLDASNF--AAMGQAVMSVVPT--HLDCFNQHAWGECYERIASGIS. 139
20 -47.600d1jl7a_ a.1.1.2 (A:) Glycera globin {Marine bloodworm (Glycera dibranchiata) [TaxId: 6350]}  ali model 3D-neighbors follow..  13  3SAAQRQVVASTWKDIA--GADNGAGVGKECLSKFISAHPEMAAVFGFSG-------ASDPGVAELGAKVLAQIGVAVSHLGDEGKMVAEMKAVGVRHKGYGIKAEYFLGASLLSAMEHRI--GGKMNAAAKDAWAAAYGDISGALIS 143
21 -46.800d3qm9a_ a.1.1.2 (A:) automated matches {Thunnus atlanticus [TaxId: 48168]}  ali model 3D-neighbors follow..  13  1..ADFDAVLKCWGPVE----ADYTTIGGLVLTRLFKEHPETQKLFPKFAGIAQADIAGNAAVSAHGATVLKKLGELLKAKGS---HAAILKPLANSHATK-HKIPINNFKLISEVLVKVMQEKAGLDAGGQTALRNVMGIIIADLEA 137
22 -46.800d1ecaa_ a.1.1.2 (A:) Erythrocruorin {Midge (Chironomus thummi thummi), fraction III [TaxId: 7154]}  ali model 3D-neighbors follow..  15  2SADQISTVQASFDKVK--------GDPVGILYAVFKADPSIMAKFTQFAGKDLESIKGTAPFETHANRIVGFFSKIIGELPN---IEADVNTFVASHKPRGVTHDQL--NNFRAGFVSYMKAHTD-FAGAEAAWGATLDTFFGMIFS 134
23 -46.300d1x9fd_ a.1.1.2 (D:) Extracellular dodecameric hemoglobin (erythrocruorin), subunit D1 {Common earthworm (Lumbricus terrestris) [TaxId: 6398]}  ali model 3D-neighbors follow..  15  3LVTESLKVKLQWASAFG-HAHERVAFGLELWRDIIDDHPEIKAPFSRVR----GDNIYSPEFGAHSQRVLSGLDITISMLDTPDMLAAQLAHLKVQHVERNLKPEFFFLKHLLHVLGDRLGTH------DFGAWHDCVDQIIDGIK. 140
24 -45.900d2wy4a_ a.1.1.0 (A:) automated matches {Campylobacter jejuni [TaxId: 197]}  ali model 3D-neighbors follow..  14  1TKEQIQIIKDCVPIL----QKNGEDLTNEFYKIMFNDYPEVKPMFN----------MEKQISGEQPKALAMAILMAAKNIENLENMRSFVDKVAITHVNLGVKEEHY--PIVGACLLKAIKNLLNPDEATLKAWEVAYGKIAKFYID 131
25 -45.500d1x9fc_ a.1.1.2 (C:) Extracellular dodecameric hemoglobin (erythrocruorin), subunit III (globin C) {Common earthworm (Lumbricus terrestris) [TaxId: 6398]}  ali model 3D-neighbors follow..  16  6SEEDHRIVQKQWDILWTESSKIKIGFGRLLLTKLAKDIPEVNDLFKRVD----IEHAEGPKFSAHALRILNGLDLAINLLDDPPALDAALDHLAHQHEVR-EGVQKAHFKKFGEILATGLPQ--VLDDYDALAWKSCLKGILTKISS 147
26 -45.200d3ubca_ a.1.1.0 (A:) automated matches {Methylacidiphilum infernorum [TaxId: 481448]}  ali model 3D-neighbors follow..  21  2DQKEKELIKESWKRI----EPNKNEIGLLFYANLFKEEPTVSVLF-------------QNPISSQSRKLMQVLGILVQGIDNLEGLIPTLQDLGRRHKQYGVVDSHYVGDCLLKSIQEYL--GQGFTEEAKAAWTKVYGIAAQVMT. 130
27 -45.200d3wfwa1 a.1.1.0 (A:1-133) automated matches {Methylacidiphilum infernorum [TaxId: 481448]}  ali model 3D-neighbors follow..  17  2TREEIKMIQKSWLRV----IDKMDEAGLLFYRRLFDVEPKVRPLF-------------KIDIEKQGRKLMDVLNWIVLNLQDIDAALDAARELARRHVKYGVKAEHYVGHTLIWTLRKMI--GSEWTKQLEQLWTQAYEALAQVMIE 131
28 -45.000d2zs0c_ a.1.1.0 (C:) automated matches {Oligobrachia mashikoi [TaxId: 55676]}  ali model 3D-neighbors follow..  13  5SSEDRANVMHNWDAAWSAASDRRVALAQAVFASLFSRDAAAQGLFSGVS----ADNPDSADFRAHCVRVVNGLDVAINMLNDPAVLNEQLAHLSAQHQARGVAAAHF--DVMAEAFAEVMPQ---SSCFSSDSWNRCFARIANGISA 145
29 -44.700d2w72a_ a.1.1.2 (A:) automated matches {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  13  3SPADKTNVKAAWGKV----GAHAGEYGAEAYERMFLSFPTTKTYFPHF-----DLSHGSAQVKGQGKKVADALTNAVAHVDDMPNALSALSDLHAHKLRVDPVNFKLLSHCLLVTLAAHL--PAEFTPAVHASLDKFLASVSTVLTS 138
30 -44.700d1naza_ a.1.1.2 (A:) Myoglobin {Sperm whale (Physeter catodon) [TaxId: 9755]}  ali model 3D-neighbors follow..  15  4SEGEWQLVLHVWAKVE----ADVAGHGQDIYIRLFKSHPETLEKFDRFKHLKEAEMKASEDLKKQGVRVLTALGAILKKKGH---HEAELKPLAQSHATK-HKIPIKYLEFISEAIIHVLHSPGNFGADAQGAMNKALELFRKDIAA 145
31 -44.200d1cg5b_ a.1.1.2 (B:) Hemoglobin, beta-chain {Cartilaginous fish akaei (Dasyatis akajei) [TaxId: 31902]}  ali model 3D-neighbors follow..  12  4SEDQEHYIKGVWKDV------DHKQITAKALERVFVVYPWTTRLFSKLQGLFSAN---DIGVQQHADKVQRALGEAIDDLKK---VEINFQNLSGKHQEIGVDTQNFLGQTFMVELALHY--KKTFRPKEHAAAYKFFRLVAEALSS 138
32 -44.000d3ozua1 a.1.1.0 (A:1-150) automated matches {Ralstonia eutropha [TaxId: 381666]}  ali model 3D-neighbors follow..  17  3TQKTKDIVKATAPVL----AEHGYDIIKCFYQRMFEAHPELKNVFN----------MAHQEQGQQQQALARAVYAYAENIEDPNSLMAVLKNIANKHASLGVKPEQYVGEHLLAAIKEVL--GNAATDDIISAWAQAYGNLADVLMG 135
33 -43.800d2zs0d_ a.1.1.0 (D:) automated matches {Oligobrachia mashikoi [TaxId: 55676]}  ali model 3D-neighbors follow..  12  4SRGDAEVVISEWDQVFNAAGSSESAIGVAIFDVFFTSSGVSPSMFPGGGDSS------SAEFLAQVSRVISGADIAINSLTNRATCDSLLSHLNAQHKAIGVTGAAV--THLSEAISSVVAQ--VLPSAHIDAWGYCMAYIAAGIGA 143
34 -43.700d1gcva_ a.1.1.2 (A:) Hemoglobin, alpha-chain {Houndshark (Mustelus griseus) [TaxId: 89020]}  ali model 3D-neighbors follow..  14  3TACEKQTIGKIAQVL----AKSPEAYGAECLARLFVTHPGSKSYFEYK-----DYSAAGAKVQVHGGKVIRAVVKAAEHVDD---LHSHLETLALTHGK-KLLVDPQNFPMLSECIIVTLATHTEFSPDTHCAVDKLLSAICQELSS 137
35 -43.600d1it2a_ a.1.1.2 (A:) Hagfish hemoglobin {Inshore hagfish (Eptatretus burgeri) [TaxId: 7764]}  ali model 3D-neighbors follow..  10  12TDGDKKAINKIWPKIY----KEYEQYSLNILLRFLKCFPQAQASFPKFST-KKSNLEQDPEVKHQAVVIFNKVNEIINSMDNQEEIIKSLKDLSQKHKT-VFKVDSIWFKELSSIFVSTI--------DGGAEFEKLFSIICILLRS 144
36 -43.300d3d1kb_ a.1.1.2 (B:) Hemoglobin, beta-chain {Antarctic fish (Trematomus newnesi) [TaxId: 35730]}  ali model 3D-neighbors follow..  15  4TDKERSIISDIFSHM------DYDDIGPKALSRCLVVYPWTQRYFSGFGNLYAEGIMSNANVAAHGIKVLHGLDRGMKNMDNIADAYTDL--STLHSEKLHVDPDNF--KLLSDCITIVLAAGHAFTAETQGAFQKFLAAVVSALGK 143
37 -42.800d3wctd_ a.1.1.0 (D:) automated matches {Lamellibrachia satsuma [TaxId: 104711]}  ali model 3D-neighbors follow..  13  3SEADATIVIKQWNQIYNAGAKSRWTMGNEIFSSLFKLKPESEVLFNNVN----VANMSSGAFHAHTVRVLSGLDMGINYLNDAGTLTSLTAHLAAQHVAR-TGLKAVYFDAMGKVLMTVLPS----DNFNPDAWRNCLLPLKNAIAK 144
38 -40.200d1gcvb_ a.1.1.2 (B:) Hemoglobin, beta-chain {Houndshark (Mustelus griseus) [TaxId: 89020]}  ali model 3D-neighbors follow..  17  4TQEERDEISKTFQGT------DMKTVVTQALDRMFKVYPWTNRYFQKRT---------DFRSSIHAGIVVGALQDAVKHMDD---VKTLFKDLSKKHAD-DLHVDPGSFHLLTDCIIVELAYKDCFTPHIQGIWDKFFEVVIDAISK 133
39 -35.800d2xkia_ a.1.1.4 (A:) Nerve tissue mini-hemoglobin (neural globin) {Milky ribbon worm (Cerebratulus lacteus) [TaxId: 6221]}  ali model 3D-neighbors follow..  12  2.........VNWAAV-----------VDDFYQELFKAHPEYQNKFG-FKGVALGSLKGNAAYKTQAGKTVDYINAAIGGSAD-------AAGLASRHKGRNVGSAEF--HNAKACLAKACSA--HGAPDLGHAIDDILSHL...... 110
40 -33.500d1tu9a1 a.1.1.2 (A:2-130) Hypothetical protein PA3967 {Pseudomonas aeruginosa [TaxId: 287]}  ali model 3D-neighbors follow..  13  1..NAADRVMQSYGRCCAS-----TGFFDDFYRHFLASSPQIRAKFA------------TTDMTAQKHLLRAGIMNLVMYARGMSDSKLRALGASHSRAALDIRPELYWLDALLMAVAEHDRD---CDAETRDAWRDVMGRGIAVIKS 127
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Robinson-Rechavi M, Alibes A, Godzik A. Contribution of electrostatic interactions, compactness and quaternary structure to protein thermostability: lessons from structural genomics of Thermotoga maritima. J Mol Biol. 2006 Feb 17;356(2):547-57. Epub 2005 Dec 7.