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Query: d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]}, from SCOP207

Results of FFAS03 search in SCOP207
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst SAFTTAVGVFEAMKATVAHRGLGSLDGLTVLVQGLGAVGGSLASLAAEAGAQLLVADTDTERVAHAVALGHTAVALEDVLSTPCDVFAPCAMGGVITTEVARTLDCSVVAGAANNVIADEAASDILHARGILYAPDFVANAGGAIHLVGREVLGWSESVVHERAVAIGDTLNQVFEISDNDGVTPDEAARTLAGRRAREASLast
1 -85.200d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]}  ali model 3D-neighbors  100  1SAFTTAVGVFEAMKATVAHRGLGSLDGLTVLVQGLGAVGGSLASLAAEAGAQLLVADTDTERVAHAVALGHTAVALEDVLSTPCDVFAPCAMGGVITTEVARTLDCSVVAGAANNVIADEAASDILHARGILYAPDFVANAGGAIHLVGREVLGWSESVVHERAVAIGDTLNQVFEISDNDGVTPDEAARTLAGRRAREAS 201
2 -74.900d3vpxa2 c.2.1.0 (A:145-363) automated matches {Sporosarcina psychrophila [TaxId: 1476]}  ali model 3D-neighbors follow..  36  2PSPVTAYGIYYGMKAAAKEAGDDSLAGKTVAVQGVGNVAYALCEYLHEEGAKLIITDINEEAVQRAVDAGATAVGINEIYSQEADIFAPCALGAIINDETIPQLKAKVIAGSANNQLKETRHGDLIHEMGIVYAPDYVINSGGVINVADELD-GYNRERALKRVEGIYDVIGKIFAISKRDNIPTYVAADRMAEERIARVA 203
3 -65.300d1gtma1 c.2.1.7 (A:181-419) Glutamate dehydrogenase {Pyrococcus furiosus [TaxId: 2261]}  ali model 3D-neighbors follow..  28  7.IEATARGASYTIREAAKVLGWDTLKGKTIAIQGYGNAGYYLAKIMSEDFGKVVAVSDSKGGIYNPDGLNADEVTNEELLELEVDVLAPAAIEEVITKKNADNIKAKIVAEVANGPV-TPEADEILFEKGILQIPDFLCNAGGVTVSYFEWVQNWTIEEVRERLDKMTKAFYDVYNIAKEKNIHMRDAAYVVAVQRVYQA. 230
4 -56.900d1bgva1 c.2.1.7 (A:195-449) Glutamate dehydrogenase {Clostridium symbiosum [TaxId: 1512]}  ali model 3D-neighbors follow..  19  12.PEATGYGSVYYVEAVMKHEND-TLVGKTVALAGFGNVAWGAAKKLAELGAKAVTLSGPDGYIYDPEGITTEEKPGEKPWGQKVDIIMPCATQNDVDLEQAKKINVKYYIEVANMPTTNEALRFLMQQPNMVVAPSKAVNAGGVLVSGFEMSQNWTAEEVDSKLHQMTDIHDGSAAAAERYGLNLVAGANIVGFQKIADA. 247
5 -55.200d1hwxa4 c.2.1.7 (A:209-501) Glutamate dehydrogenase {Cow (Bos taurus) [TaxId: 9913]}  ali model 3D-neighbors follow..  17  4.ISATGRGVFHGIENFIENASTPGFGDKTFAVQGFGNVGLHSMRYLHRFGAKCVAVGESDGSIWNPDGIDPKELYEGSILEVDCDILIPAASEKQLTKSNAPRVKAKIIAEGANGPT-TPQADKIFLERNIMVIPDLYLNAGGVTVSYFQILKNYGRLTFKYERDSYHLLMSVQESLERKFGKHGGTIPIVPTAEFQDRIS 233
6 -19.600d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  13  2NLYGCRESLIDGIKRATDV----MIAGKVAVVAGYGDVGKGCAQALRGFGARVIITEIDPINALQAAMEGYEVTTMDEACQEGNIFVTTTGCIDIILGRHFEQMK-AIVCNIGHFD..................................................................................... 114
7 -13.500d4ypoa1 c.2.1.0 (A:1-180) automated matches {Mycobacterium tuberculosis [TaxId: 1773]}  ali model 3D-neighbors follow..  17  5.................DDADLSIIQGRKVGVIGYGSQGHAHSLSLRDSGVQVRVGLKQGSRSRPKVEEQGLDVDTPAEVAKWADVVMVLAQAEIFAGDIEPNLKPGDALFFGHG...................................................................................... 106
8 -13.000d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Methanobacterium thermoautotrophicum [TaxId: 145262]}  ali model 3D-neighbors follow..  16  1...........................LRVGFIGFGEVAQTLASRLRSRGVEVVTSLEGRSPSTIERARTVGVTETSEEDVYSCPVVVTPGVALGAARRAGRHVRGIYVDINNISPETVRMASSLIEKGGFVDAA.................................................................. 111
9 -13.000d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]}  ali model 3D-neighbors follow..  18  41.......................DLEAMHVGTVAAGRIGLAVLRRLAPFDVHLHYTDRHRLPESVEKELNLTWHATREDMYPVCDVVT--ETEHMINDETLKLFKGAYIVNTARGKLCDRDAVARALESGRL..................................................................... 155
10 -12.900d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]}  ali model 3D-neighbors follow..  19  40.......................EVRDQVVGVVGTGHIGQVFMQIMEGFGAKVITYDIFRNP--ELEKKGYYVDSLDDLYK-QADVIVPDANVHMINDESIAKMKDVVIVNVSRGPLVDTDAVIRGLDSGKI..................................................................... 151
11 -12.500d1vl6a1 c.2.1.7 (A:155-376) Malate oxidoreductase (malic enzyme) {Thermotoga maritima [TaxId: 2336]}  ali model 3D-neighbors follow..  17  5....TAVVVSAAFLNALKLTE-KKIEEVKVVVNGIGAAGYNIVKFLLDLGVKNVVAVDRKGILNENDPETCLNEYHLEIAREGADFFIGVSRGNILKPEWIKKMSRKPVIFALANPVPEIDPELAIVATGRSDHPNQVNNL-GAVEKRSKITKNMLLSAVEAIARSCEPEPERIIPEAFDMKVHLNVYT............ 216
12 -12.000d1saya1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}  ali model 3D-neighbors follow..  20  19.....GRGVLLG--------GVPGVKPGKVVILGGGVVGTEAAKMAVGLGAQVQIFDINVERLSYLETLFGSRVELLY-AVAEADLLIGAVL----------------VPGRRAPILVPASLVEQMRTGSVIV--DVAVDQGGCV........................................................ 139
13 -12.000d2x5oa1 c.5.1.0 (A:1-93) automated matches {Escherichia coli [TaxId: 668369]}  ali model 3D-neighbors follow..  20  1......................ADYQGKNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRMDKLPEAVERHTGSLNDEWLMAADLIVASPGIALAHPSLSAAADAGIEIV............................................................................................ 92
14 -11.700d4dlla1 c.2.1.0 (A:29-190) automated matches {Polaromonas sp. [TaxId: 296591]}  ali model 3D-neighbors follow..  20  2.........................YARKITFLGTGSMGLPMARRLCEAGYALQVWNRTPARAASLAALGATIHEQARAAARDADIVVGAVVQDVLFAQGV-KPGSLFLDMASITPREARDHAARLGALGIAHLDTPV--SGGTVGA...................................................... 129
15 -11.700d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Fungus (Magnaporthe grisea) [TaxId: 148305]}  ali model 3D-neighbors follow..  14  1.........................ATKSVLMLGSGFVTRPTLDVLTDSGIKVTVACRTLESAKKLSA------GVQHSTPISLDVNDDAALDAEVAKHDLTVIKSAIVVTTSYVSPAMMELDQAAKDAGITVMNEIGXYSA........................................................... 127
16 -11.600d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Pyrobaculum aerophilum [TaxId: 13773]}  ali model 3D-neighbors follow..  17  39.......................LIQGEKVAVLGLGEIGTRVGKILAALGAQVRGFSRTPKEGPWRFTNSLEALREARAAVCALPVFVNVGRAEVLDRDGVRILKERPQFIFASDVWWGRNDAEFFSLPNVVATPWV................................................................ 179
17 -11.600d5je8a1 c.2.1.0 (A:1-163) automated matches {Bacillus cereus [TaxId: 226900]}  ali model 3D-neighbors follow..  15  2...........................KKIGFIGLGNMGLPMSKNLVKSGYTVYGVDLNKEAEASFEKEGGIIGLSISKLAETCDVVFTSGAEGLFENGHSNVV---FIDTSTVSPQLNKQLEEAAKEKKVDFLAAPV--SGGVIGA...................................................... 128
18 -11.600d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}  ali model 3D-neighbors follow..  17  23....................AAGTVPPARVLVFGVGVAGLQAIATAKRLGAVVMATDVRAATKEQVESLGGKFITVDKEMGEEFRKKQAEAVLKELVKTDI--ITTALIPGKPAPVLITEEMVTKMKPGSVII--DLAVEAGGNCPL...................................................... 160
19 -11.500d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]}  ali model 3D-neighbors follow..  25  46.......................RIRGETLGIIGLGRVGQAVALRAKAFGFNVLFYDPYLSD-GVERALGLQRVSTLQDLLFHSDCLVNTARGGLVDEKALQALKEGRIRGAALDVHESESQGPLKDAPNLICTPHA................................................................ 191
20 -11.300d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}  ali model 3D-neighbors follow..  27  41.......................EIFGKTVGVVGLGRIGQLVAQRIAAFGAYVVAYDPYVSP-ARAAQLGIELLSLDDLLA-RADFIVNAARGGLVDEAALDAITGGHVRAAGLDVFATETDSPLFELAQVVVTPHL................................................................ 183
21 -11.300d2gf2a1 c.2.1.0 (A:41-201) automated matches {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  14  1............................PVGFIGLGNMGNPMAKNLMKHGYPLIIYDVFPDACKEFQDAGEQVVSSPADVAEKADRIITMGANGILKKVKKGSL---LIDSSTIDPAVSKELAKEVEKMGAVFM-DAPVSGG........................................................... 122
22 -11.300d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  22  41.......................EARGKKLGIIGYGHIGTQLGILAESLGMYVYFYDIENKL---PLGNATQVQHLSDLLN-MSDVLINASRGTVVDIPALDALASKHLAGAAIDVFPTEPTSPLAEFDNVLLTPHI................................................................ 186
23 -11.200d2hmta_ c.2.1.9 (A:) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}  ali model 3D-neighbors follow..  20  1..........................NKQFAVIGLGRFGGSIVKELHRMGHEVLAVDINEEKVNAYASYATHAVIAN------------ATEENELLSLGIRNFEYVIVAIGANVKAQNYYHHKVLEKIGAIIHPE................................................................. 120
24 -11.100d3ws7a1 c.2.1.0 (A:1-161) automated matches {Pyrobaculum calidifontis [TaxId: 410359]}  ali model 3D-neighbors follow..  21  1...........................MRVGFIGLGIMGGPMATHLLKAGFLAAVYNRTREKTKPFAEAGVYVAESPADLAKRVDVVIVMGPSGVVEGARPGLI---VVDMSTNSPDWARKFAERLAQYGIEFL-DAPVTGG........................................................... 123
25 -11.100d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]}  ali model 3D-neighbors follow..  21  44.......................KLDNKTLGIYGFGSIGQALAKRAQGFDMDIDYFDTHRASSSDEASYQATFHDSLDSLLSVSQIVVNTARGDLVDNELVAALEAGRLAYAGFDVFAGEINEGYYDLPNTFLFPHI................................................................ 188
26 -11.000d2g1ua_ c.2.1.0 (A:) automated matches {Thermotoga maritima [TaxId: 2336]}  ali model 3D-neighbors follow..  17  5...........................KYIVIFGCGRLGSLIANLASSSGHSVVVVDKNEYAFHRNSEFSGFTVVGD---AAEFETLKECGMEKAFTNDDSTNFFISMNARYMFNRVYDPEKIKIFEENGIKTICPAVLMIEKVK........................................................ 131
27 -10.700d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]}  ali model 3D-neighbors follow..  14  1...........................MKIAVAGSGYVGLSLGVLLSL-QNEVTIVDILPSKVDKINNLSIKATLDSKAAYKEAELVIPTNYNSRINYFDTQHVETVLIIKSTIPIGFITEMRQKFQTDRIIFSPEFLRESKAL......................................................... 149
28 -10.600d2uyya1 c.2.1.0 (A:262-429) automated matches {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  15  5.........................TDKKIGFLGLGLMGSGIVSNLLKMGHTVTVWNRTAEKCDLFIQEGARLGRTPAEVVSTCDITFACGPSGVLQGIRPGKC---YVDMSTVDADTVTELAQVIVSRGGRFLEAPVSGN............................................................ 129
29 -10.600d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker`s yeast (Saccharomyces cerevisiae) [TaxId: 4932]}  ali model 3D-neighbors follow..  19  6AAPLLCGGL--TVYSPLVRNGCGP--GKKVGIVGLGGIGSMGTLISKAMGAETYVISRSSRKREDAMKMG-------------ADHYIATLEEGDWGEKYFDTFDLIVVCASSLTDIDFNIMPKAMKVGGRIVS................................................................... 122
30 -10.400d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}  ali model 3D-neighbors follow..  17  6AAPIFCAGV--TTYKALKVTGAKP--GEWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGDEKLELAKELG-------------ADLVVNPLKEDAAKFMKEKVGGVHAAVVTAVSKPAFQSAYNSIRRGGACVL................................................................... 122
31 -10.400d4yaga_ c.2.1.0 (A:) automated matches {Sphingobium sp. [TaxId: 627192]}  ali model 3D-neighbors follow..  15  2.......................DIAGTTAFITGGASIGFGIAQRLLANGARLVLADIRQDHLDEARQFFEERQQGRNVHTIRLDVSDRAQMAEAARECEAVMGGPDILINNAGIDPSGPFKDATYQDWDYGL-----INLMGPINGIMAFTPGMRARGRGGHIVNTASLAGLTPMPSFMAIYATAKAAVITLTETIR... 173
32 -10.300d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]}  ali model 3D-neighbors follow..  14  1...........................MKIGIIGVGKMASAIIKGLKQTPHELIISGSSLERSKEAEQLALPYAMSHQDLIDQVDLVIPQLFETVLKPLHFKQPIISMAAGISLQRLATFVGQDL-----LRIMPNMQILQSSTALTGNALVSQELQARVRDLTDSFGSTF.............................. 148
33 -10.000d4gwga1 c.2.1.0 (A:1-176) automated matches {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  13  3...........................ADIALIGLAVMGQNLILNMNDHGFVVCAFNRTVSKVDDFLANEAKGTKVVGAQSLK--RIILLVKAGQAVDDFIEKLTGDIIIDGGNEYRDTTRRCRDLKAKGILFV-GSGVSGGEEGARYGPSLMPGGNKEAWPHIKTIFQGIAA............................ 161
34 -10.000d3lf2a_ c.2.1.0 (A:) automated matches {Pseudomonas aeruginosa, PA01 [TaxId: 208964]}  ali model 3D-neighbors follow..  21  3.......................DLSEAVAVVTGGSSIGLATVELLLEAGAAVAFCARDGERLRAAESALRQRFPGARLFASVCDVLDALQVRAFAEACERTLGCASILVNNAG-ETTDEAWSEELQLK--AFLPQLESRADAAIV....................................................... 140
35 -10.000d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  15  9........................PAATRVMLLGSGELGKEVAIECQRLGVEVIAVDRYADAPAMHVAHRSHVINMLDGDAL---------------RRVVELEKPHYIVPEIEA--IATDMLIQLEEEGLNVVP.................................................................. 102
36 -9.940d3g0oa1 c.2.1.0 (A:6-169) automated matches {Salmonella typhimurium [TaxId: 602]}  ali model 3D-neighbors follow..  18  1..........................DFHVGIVGLGSMGMGAARSCLRAGLSTWGADLNPQACANLLAEGACGAAASREFAGVVDALVILGEDGVAHLMKPGSA---VMVSSTISSADAQEIAAALTALNLNML-DAPVSGG........................................................... 125
37 -9.940d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  19  9VAPLLCAGI--TTYSPLRHWQAGP--GKKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSEAKREAAKALGADEVDEMAAHLKSFDFILNTVAAPHNLDDFTTLLKRDTLVGAPATPHKSPEVFNLIMKR........................................................................ 142
38 -9.880d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  20  1........................VNGKVALVTGAAQIGRAFAEALLLKGAKVALVDWNLEAGVQCKAALHEQFEPQKTLFIQCDVADQQQLRDTFRKVVDHFGRLDILVNNA-GVNNEKNWEKTLQYLGLDYMSKQNGGEGGIII....................................................... 132
39 -9.820d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  17  3......................KSVTGEIVLITGAGHIGRLTAYEFAKLKSKLVLWDINKHGLEETAAKCKGL--GAKVHTFVVDCSNREDIYSSAKKVKAEIGDVSILVNNAGSDLFATQDPQIEKTFEVAFLPAMTKNNHGHIVTVASAAGHVSVPFLLAAAVGFHKTLTDELAALQITGVKTTCLCPNFVNTGFIKNP 200
40 -9.780d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]}  ali model 3D-neighbors follow..  19  2........................FTDRVVLITGGGSLGRATAVRLAAEGAKLSLVDVSSEGLEASKAAVLETAPDAEVLTTVADVSDEAQVEAYVTATTERFGRIDGFFNNAGESFTAAEFDKVVS-RGVFLLKIMREQGSGMVV....................................................... 139
41 -9.720d5jo9a_ c.2.1.0 (A:) automated matches {Bradyrhizobium japonicum [TaxId: 375]}  ali model 3D-neighbors follow..  15  1.......................ELEGKVAAVTGAASIGLASAEAMLAAGARVVMVDRDEAALKALCN-------GDTVIPLVVDLLDPEDCATLLPRVLEKACQLDILHANAG-DADTMAIDRMLN-NVVMKLPHMIERRTGDIIVTSS................................................... 137
42 -9.670d2jaha_ c.2.1.0 (A:) automated matches {Streptomyces clavuligerus [TaxId: 1901]}  ali model 3D-neighbors follow..  16  1......................SALQGKVALITGASSIGEATARALAAEGAAVAIAARRVEKLRALGD----TAAGAKVHVLELDVADRQGVDAAVASTVEALGGLDILVNNAGIMLLGPVEDADTTDLGLMYLPHLLRSKGTVVQM...................................................... 138
43 -9.500d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}  ali model 3D-neighbors follow..  19  3........................FSNKTVIITGSSNIGRTTAILFAQEGANVTITGRSSERLEERQIILKSGVSEKQVNSVVADVTTEDGQDQIINSTLKQFGKIDVLVNNAGTDQGIDIYHKTLK-QAVIEKPHLVASKGEIVNVSS.................................................... 147
44 -9.430d2cvza2 c.2.1.6 (A:2-157) Hydroxyisobutyrate dehydrogenase {Thermus thermophilus [TaxId: 274]}  ali model 3D-neighbors follow..  25  1...........................EKVAFIGLGAMGYPMAGHLARRFPTLVWNRTFEKALRHQEEFGSEAVPLE--RVAEARVIFTCLPTTREVYEVAEALGTYWVDATSGEPEASRRLAERLREKGVTYL-DAPVSGG........................................................... 118
45 -9.370d1xu9a1 c.2.1.2 (A:24-289) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  12  2.................EEFRPEMLQGKKVIVTGASKIGREMAYHLAKMGAHVVVTARSKETLQKVVS-HCLELGAASAHYIAGTMEDMTFAEQFVAQAGKLMGGLDMLILNHITNTSLNLFHDDIHHVRKSMLPMLKQSNGSIVVVSS.................................................... 147
46 -9.290d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. PCC 6803 [TaxId: 1148]}  ali model 3D-neighbors follow..  19  1...........................MKIGVVGLGLIGASLAGDLRRRGHYLIGVSRQQSTCEKAVERQLVDEAGQDLSLLTAKIIFLCLILPTLEKLIPHLSPTAIVTDVASVKTAIAEPASQLWSGFIGGHPMAGTAAQGIDGA...................................................... 125
47 -9.260d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Methanococcus jannaschii [TaxId: 2190]}  ali model 3D-neighbors follow..  14  1...........................MYIIIAGIGRVGYTLAKSLSEKGHDIVLIDIDKDIVINGDCTKIKTLEDAGI--EDADMYIAVT-VNLMSSLLAKSYGINKTIARISEI----EYKDVFERLGV----DVVVSPELIAA....................................................... 123
48 -9.260d5dzsa2 c.2.1.0 (A:101-269) automated matches {Peptoclostridium difficile [TaxId: 272563]}  ali model 3D-neighbors follow..  12  2.....YFGLDSMFKMA-------DVQGKVAVILGTGGASKAALTYFIDSGIEKLYVSTRKKDDKKLLNSKAILIDYEELKHIKGDIILNATPVGMYPNVGISPVNFDILIDLIYNPGETE---RIGNSMGKKTC-------DGLYMLVGQAIKSQDNSILDVIYNELKLEF.............................. 168
49 -9.240d5bsea1 c.2.1.0 (A:3-169) automated matches {Medicago truncatula [TaxId: 3880]}  ali model 3D-neighbors follow..  15  5.......................PADSYTLGFIGAGKMAESIAKGAVRSGVRIKTAIHSNPARRTFESIGITVLSSNDDVVRDSNVVVPQLLKDVVLKLKPLLTKDKLLVSVAAGIKMKDLQEWAGHERFIRVMPNTTVGEAASVMSLGGAATEEDANLISQLFGSIGKIW.............................. 163
50 -9.230d1xg5a1 c.2.1.2 (A:2-256) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  12  1.................ARPGMERWRDRLALVTGASGIGAAVARALVQQGLKVVGCARTVGNIEELAAECKSAGYPGTLIPYRCDLSNEEDILSMFSAIRSQHSGVDICINNAGLARPDTLLSGSTSGWKDMF-----VNVLALSICTREAYQSMKERNVDD....................................... 142
51 -9.170d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}  ali model 3D-neighbors follow..  23  1..........................SKTYAVLGLGNGGHAFAAYLALKGQSVLAWDIDAQRIKEIQDRGGLAVKDADVI-----IVVPAIHHASIAANIASYIS-QLIILNPGATGGALEFRKILRENG....................................................................... 123
52 -9.140d1cf2o1 c.2.1.3 (O:1-138,O:304-336) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Methanothermus fervidus [TaxId: 2180]}  ali model 3D-neighbors follow..  13  2...........................KAVAINGYGTVGKRVADAIAQQDMKVIGVSKIPERVKLFEKAGIEVAGTVDDMLDEADIVIDCTPEGIGAKNLKMYKEKKAIFQGGEKHNSLSNYEESYGKDYTRVVXIVPENVDAVRAILEMEEDKYKSINKTNKAMNI.................................. 171
53 -9.130d3fr7a1 c.2.1.0 (A:86-307) automated matches {Oryza sativa [TaxId: 39947]}  ali model 3D-neighbors follow..  12  38........................KGIKQIGVIGWGSQGPAQAQNLRDSLAEKIGLRKGSKSFDEARAAGFETVSGSDLV-----LLISDAAQADNYEKIFSHMK-SILGLSHGFLLGHLQSAGLDFPKNISVI................................................................... 162
54 -9.120d1edza1 c.2.1.7 (A:149-319) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Baker`s yeast (Saccharomyces cerevisiae) [TaxId: 4932]}  ali model 3D-neighbors follow..  17  1..PCTPLAIVKILEFLNLLPEGNRLYGKKCIVINRSEVGRPLAALLANDGATVYSVDVNNIQKFTRGELGEYSEDLLKKCSLDSDVVI-TGVPSENYKFPTEYIK-AVCINFACTKNFSDD----VKEKASLYVP-----TGKVTIA...................................................... 153
55 -9.120d3zv4a_ c.2.1.2 (A:) automated matches {Pandoraea pnomenusa [TaxId: 93220]}  ali model 3D-neighbors follow..  20  3........................LTGEVALITGGASLGRALVDRFVAEGARVAVLDKSAERLRELEV-------GGNAVGVVGDVRSLQDQKRAAERCLAAFGKIDTLIPNAGEDKIDAAFDDIFH-KGYIHLPALVSSRGSVVFTIS.................................................... 142
56 -9.040d2i76a2 c.2.1.6 (A:2-154) Hypothetical protein TM1727 {Thermotoga maritima [TaxId: 2336]}  ali model 3D-neighbors follow..  9  1............................VLNFVGTGTLTRFFLECLKDRYEIGYILSRSIDRARNLAEVYGGKAATLEKHPELNGVVFVIVPDRYIKTVANHLNLGDAVLVHCSGFLSSE................................................................................. 92
57 -9.040d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  12  22.......................SFQGKVAFITGGGTLGKGMTTLLSSLGAQCVIASRKMDVLKATAE-QISSQTGNKVHAIQCDVRDPDMVQNTVSELIKVAGHPNIVINNAAGNFISPTERLSPNAWKTIT-----IVLNGTAFVTLEIGKQLIKAQKGAAFLSITTIYAETGSGFVVPSASAKAGVEAMSKSLAAE.. 193
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Godzik A. Discovering new genes with advanced homology detection. Trends Biotechnol. 2002 Aug;20(8):315-6.