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Query: d1dova_ a.24.9.1 (A:) alpha-catenin {Mouse (Mus musculus) [TaxId: 10090]}, from SCOP207

Results of FFAS03 search in SCOP207
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst ESQFLKEELVVAVEDVRKQGDLMKSAAGEFADDPCSSVKRGNMVRAARALLSAVTRLLILADMADVYKLLVQLKVVEDGILKLRNAGNEQDLGIQYKALKPEVDKLNIMAAKRQQELKDVGNRDQMAAARGILQKNVPILYTASQACLQHPDVAAYKANRDLIYKQLQQAVTGISNAAQATLast
1 -71.800d1dova_ a.24.9.1 (A:) alpha-catenin {Mouse (Mus musculus) [TaxId: 10090]}  ali model 3D-neighbors  100  1ESQFLKEELVVAVEDVRKQGDLMKSAAGEFADDPCSSVKRGNMVRAARALLSAVTRLLILADMADVYKLLVQLKVVEDGILKLRNAGNEQDLGIQYKALKPEVDKLNIMAAKRQQELKDVGNRDQMAAARGILQKNVPILYTASQACLQHPDVAAYKANRDLIYKQLQQAVTGISNAAQAT 181
2 -43.000d3rf3b2 a.24.9.1 (B:129-258) automated matches {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  21  1...............................................................AEVRKIIRVCKGILEYLTVAEVVETMEDLVTYTKNLGPGMTKMAKMIDERQQELTHQEHRVMLVNSMNTVKELLPVLISAMKIFVTTKNSEEALKNRNFTVEKMSAEINEIIRVLQLT 123
3 -23.900d3rf3a1 a.24.9.1 (A:2-128) automated matches {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  28  65EDQILKRDMPPAFIKVENACTKLVQAAQMLQSDPYSVPARDYLIDGSRGILSGTSDLLLTFDE...................................................................................................................... 127
4 -22.400d1u89a1 a.216.1.1 (A:755-889) Talin 1 {Mouse (Mus musculus) [TaxId: 10090]}  ali model 3D-neighbors follow..  16  5EDGQLLRGVGAAATAVTQALNELLQHVKAHATG---AGPAGRYDQATDTILTVTENIF-------------------------SSMGDAGEMVRQARILAQATSDLVNAIKADAEGESDLENSRKLLSAAKILADATAKMVEAAKGAAAHPDSEEQQQR...................... 135
5 -20.800d2b0ha1 a.24.9.2 (A:1843-1973) Talin 1 {Mouse (Mus musculus) [TaxId: 10090]}  ali model 3D-neighbors follow..  16  4...............................PEGSFVDYQTTMVRTAKAIAVTVQEMVT------------------------KSNTSPEELGPLANQLTSDYGRLASQAKPAAVAAENEEIGAHIKHRVQELGHGCSALVTKAGALQCSPSDVYTKKELIECARRVSEKVSHVLAALQAG 129
6 -19.500d1st6a7 a.24.9.1 (A:719-855) Vinculin {Chicken (Gallus gallus) [TaxId: 9031]}  ali model 3D-neighbors follow..  13  6..............................................................DASEEAIKKDLDKCKVAMAN----MQPQMLVAGATSIARRANRILLVAKREVENSEDPKFREAVKAASDELSKTISPMVMDAKAVAGNISDPGLQKSFLDSGYRILGAVAKVREAFQPQ 120
7 -19.400d1sj8a2 a.216.1.1 (A:658-782) Talin 1 {Mouse (Mus musculus) [TaxId: 10090]}  ali model 3D-neighbors follow..  10  3TDPHFQDVLMQLANAVASAAAALVLKAKSVAQRTEDSGLQTQVIAAATQCALSTSQLVACTKVVA---------------PTISSPVCQEQLVEAGRLVAKAVEGCVSASQAATED---GQLLRGVGAAATAVTQALNELL........................................ 125
8 -18.200d1r0da_ a.216.1.1 (A:) Huntingtin interacting protein 12 {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  10  43VKLEVNERILNSCTDLMKAIRLLVTTSTSLQKEIVESGRTEGLISASKAVGWGATQLVEAADKV------------------VLHTGKYEELIVCSHEIAASTAQLVAASKVKAN--KHSPHLSRLQECSRTVNERAANVVASTKSGQEQIEDRD.......................... 192
9 -15.000d1l7ca1 a.24.9.1 (A:388-507) alpha-catenin {Mouse (Mus musculus) [TaxId: 10090]}  ali model 3D-neighbors follow..  16  2................................................................HVSDSFLETNVPLLVLIEAAKNGNEKEVKEYAQVFREHANKLIEVANLACSISNNEEGVKLVRMSASQLEALCPQVINAALALAAKPQSKLAQENMDLFKEQWEKQVRVLTDAVD.. 116
10 -12.300d1l7ca2 a.24.9.1 (A:508-631) alpha-catenin {Mouse (Mus musculus) [TaxId: 10090]}  ali model 3D-neighbors follow..  10  6..............................................................AVSENHILEDVNKCVIALQE----KDVDGLDRTAGAIRGRAARVIHVVTSEMDNYEPGVYTEKVLEATKLLSNTVMPRFTAVEALSSDPAQPMDENEFIDASRLVYDGIRDIRKAV... 122
11 -11.900d1st6a6 a.24.9.1 (A:647-718) Vinculin {Chicken (Gallus gallus) [TaxId: 9031]}  ali model 3D-neighbors follow..  12  7.....................................................................................................................ANKTTVEGIQATVKSARELTPQVVSAARILLRNPGNQAAYEHFETMKNQWIDNVEKMTGLVD.. 68
12 -11.600d1qkra_ a.24.9.1 (A:) Vinculin {Chicken (Gallus gallus) [TaxId: 9031]}  ali model 3D-neighbors follow..  11  3EEFPEQKAGEAINQPMMMAARQLHDEARK-------SSKGNDIIAAAKRMALLMAEMSRLVR---------------------GGSGNKRALIQCAKDIAKASDEVTRLAKEVAKQCTDKRIRTNLLQVCERIPTISTQLLSTVKATMLGRTDEESEQATEMLVHNAQNLMQSVKETVREA 161
13 -10.500d1sj7a1 a.215.1.1 (A:488-654) A middle domain of Talin 1 {Mouse (Mus musculus) [TaxId: 10090]}  ali model 3D-neighbors follow..  14  5.QQALTGTINSSMQAVQAAQATLDDFETPLGQDAASKAWRKNKMDESKHEIHS-----------QVDAITAGTASVVNLTAGDPAETDYTAVGCAVTTISSNLTEMSRGVKLLAALLEDEGNGRPLLQAAKGLAGAVSELLRSAQ-----PASAEPRQNLLQAAGNVGQASGELLQ..... 166

FFAS is supported by the NIH grant R01-GM087218-01
1 4 6 2 1 0   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Veeramalai M, Ye Y, Godzik A. TOPS++FATCAT: fast flexible structural alignment using constraints derived from TOPS+ Strings Model. BMC Bioinformatics. 2008 Aug 31;9(1):35