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Query: d1e8ca3 c.72.2.1 (A:104-337) UDP-N-acetylmuramyl tripeptide synthetase MurE {Escherichia coli [TaxId: 562]}, from SCOP207

Results of FFAS03 search in SCOP207
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst PSDNLRLVGVTGTNGKTTTTQLLAQWSQLLGEISAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLVDQGATFCAMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSEHHCGQAIINADDEVGRRWLAKLPDAVAVSMEDHINPNCHGRWLKATEVNYHDSGATIRFSSSWGDGEIESHLMGAFNVSNLLLALATLLALGYPLADLLKTAARLQPLast
1 -107.000d1e8ca3 c.72.2.1 (A:104-337) UDP-N-acetylmuramyl tripeptide synthetase MurE {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors  100  1PSDNLRLVGVTGTNGKTTTTQLLAQWSQLLGEISAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAGLVDQGATFCAMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSEHHCGQAIINADDEVGRRWLAKLPDAVAVSMEDHINPNCHGRWLKATEVNYHDSGATIRFSSSWGDGEIESHLMGAFNVSNLLLALATLLALGYPLADLLKTAARLQP 234
2 -46.400d2x5oa2 c.72.2.1 (A:94-297) automated matches {Escherichia coli [TaxId: 668369]}  ali model 3D-neighbors follow..  27  10...QAPIVAITGSNGKSTVTTLVGEMAKAAGVNVGVGGNIGL----------------------ALMLLDDECELYVLELSSFQLET--TSSLQAVAATILNVTEDHMDYPFGLQQYRAAKLRIYE--NAKVCVVNADDALTMPIRGADERCVSF----GVNMGDYHLNHQQGETWLRVKGEKVLNVK-------EMKLSGQHNYTNALAALALADAAGLPRASSLKALTTFT. 204
3 -44.100d4cvka2 c.72.2.0 (A:101-319) automated matches {Pseudomonas aeruginosa, PA01 [TaxId: 208964]}  ali model 3D-neighbors follow..  22  1...TGPLAAMTGSSGKTTVKEMLASILRTQAGDAE-----------SVLATRGNLNNDLGVPLTLLQL-APQHRSAVIELGASRIGEAYTVELT-HVAIITNAGTAHVGEFGGPEKIVEAKGEILEGLAAGTAVLNLDDKAFDTWKARASGRPLLT-----SLDRPQADFRAADLQRDARGMGFRLQGVAGEAQVQLNLLGRHNVANALAAAAAAHALGVPLDGIVAGLQALQP 219
4 -35.900d1p3da3 c.72.2.1 (A:107-321) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}  ali model 3D-neighbors follow..  21  15.......IAVAGTHGKTTTTAMISMIYTQAKDPTFVNGGL--------------------VKSAGKNAHLGASRYLIAEADES---DASFLHLQPMVSVVTNMEPDHMDYEGDFEKMKATYVKFLHNLPFGLAVMCADDPVLMELVPKVGRQVITYGFS------EQADYRIEDYEQTGFQGHYTVICPNNERNVLLNVPGKHNALNATAALAVAKEEGIANEAILEALADFQ. 215
5 -34.500d3eaga2 c.72.2.0 (A:93-323) automated matches {Neisseria meningitidis [TaxId: 122586]}  ali model 3D-neighbors follow..  17  10.LHHHWVLGVAGTHGKTTTASMLAWVLEYAGLAPGLIGGVPENFGVS-----------ARLPQTPRQDPNSQSPFFVIEADEYD-KRSKFVHYRPRTAVLNNLEFDHADIFADLGAIQTQFHYLVRTPSEGLIVCNGRQQSLQDTLDKGCWTPVE-------KFGTEHGWQAGEAN---ADGSFDVLLDGKTARVKWDLMGRHNRMNALAVIAAARHVGVDIQTACEALGAFK. 227
6 -34.300d1j6ua3 c.72.2.1 (A:89-295) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]}  ali model 3D-neighbors follow..  20  17.......FAVTGTDGKTTTTAMVAHVLKHLRKSTVFLGGI--------------------MDSLEHGNYEKGNGPVVYELDES---EEFFSEFSPNYLIITNARGDHLEYGNSLTRYRSAFEKISR--NTDLVVTFAEDELTSHL------GDVTFGV-------KKGTYTLEMRSASRAEQKAMVEKNGKRYELKLKVPGFHNVLNALAVIALFDSLGYDLAPVLEALEEFR. 207
7 -24.500d1o5za2 c.72.2.2 (A:1-293) Folylpolyglutamate synthetase {Thermotoga maritima [TaxId: 2336]}  ali model 3D-neighbors follow..  14  36PHLEYKTIHIGGTNGKGSVANMVSNILVSQGYRVGSYYS--EPILNELDKEEIFSPSFFEVVTAMA-FAEKNVDIAVLEVG------GRLDATNV-CSTIVTVDRDHEKTLGTIEQIAWEKSGIIKERVP--LVTGERKREALKVMEDVARKK------SSRMYVIDKDFSVKVKSLKLHENRFDYCGENTFEDLVLTMNGPHQIENAGVALKTLEATGLPLKAIREGLKNAK. 291
8 -23.000d2gc6a2 c.72.2.2 (A:1-296) Folylpolyglutamate synthetase {Lactobacillus casei [TaxId: 1582]}  ali model 3D-neighbors follow..  15  35PQQQGRYIHVTGTNGKGSAANAIAHVLEASGLTVGLVAFVRAALERLQQQQADFNVTEFEFITALG-FRQRQVDVAVIEVG------GDTDSTNV-VSVLTEVALDHQKLLGTITAIAKHKAGIIKRGIP--VVTGNLVPDAAAVVAAKVATT------GSQWLRFDRDFSVPKAKLHGWGQRFTYEDQDGRISLEVPLVGDYQQRNMAIAIQTAKVYPLTPQNIRQGLAASH. 296
9 -20.500d2g0ta1 c.37.1.10 (A:1-338) Hypothetical protein TM0796 {Thermotoga maritima [TaxId: 2336]}  ali model 3D-neighbors follow..  19  153YRKKIKVVGVFGTDGKRTTAVQLWERALEKGIKAGFLATGQTGI-GYVIDAVPADFVSGVVEKAVLKLEKTGKEIVFVEGQGAQVTLGLLYGSNPDVVFLHDPSRDHFESFPEFEEERRLIETLSNAKVIGGVSLNGGFETDLPVYDPFNTD.................................................................................. 326
10 -10.600d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]}  ali model 3D-neighbors follow..  13  18KTAGRLVLGIDGRSGKTTLANQLSQTLREQGISVCVFHMDDHIVERAKRYHTGNEYLQWDVEWLTHQLFRQLKASHQLTLPFYDHETDTIEGV-FDFVVYLDNDQVKQNIQKFINRYWKAEDYYLETEEPIKVVFD.................................................................................................. 198
11 -9.130d1jfla1 c.78.2.1 (A:1-115) Aspartate racemase {Pyrococcus horikoshii OT3 [TaxId: 70601]}  ali model 3D-neighbors follow..  13  1....MKTIGILGGMGPLATAELFRRIVIKTPAKRDIIFNNPQIPDRTAYILGKGEDPRPQLIWTAKRLEECGADFIIMPCNTHAFVEDIRKAIKIPIISMIEETAKKVKELG.......................................................................................................................... 115
12 -9.110d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]}  ali model 3D-neighbors follow..  14  1....MNVWQVVGHSGKTTLMEKWVAAAVREGWRVGTVKHHGHGGEPARPEGVDS-----------VRHERAGAVATAVEGDGLQLHLRRPLWRLDDVLALYAPLRLDLVLVEGYKQERHPKVVLVRSEEDWASLQHLAN............................................................................................... 127

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Igarashi Y, Eroshkin A, Gramatikova S, Gramatikoff K, Zhang Y, Smith JW,Osterman AL, Godzik A. CutDB: a proteolytic event database. Nucleic Acids Res. 2007 Jan;35(Database issue):D546-9. Epub 2006 Nov 16.