current user: public

If you have questions about the server, please let us know.

Query: d1fm0e_ d.41.5.1 (E:) Molybdopterin synthase subunit MoaE {Escherichia coli [TaxId: 562]}, from SCOP207

Results of FFAS03 search in SCOP207
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130    .  140    .
# Score Template Links and tools%idFirst AETKIVVGPQPFSVGEEYPWLAERDEDGAVVTFTGKVRNHNLGDSVNALTLEHYPGMTEKALAEIVDEARNRWPLGRVTVIHRIGELWPGDEIVFVGVTSAHRSSAFEAGQFIMDYLKTRAPFWKREATPEGDRWVEARESDQQAAKRWLast
1 -84.500d1fm0e_ d.41.5.1 (E:) Molybdopterin synthase subunit MoaE {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors  100  1AETKIVVGPQPFSVGEEYPWLAERDEDGAVVTFTGKVRNHNLGDSVNALTLEHYPGMTEKALAEIVDEARNRWPLGRVTVIHRIGELWPGDEIVFVGVTSAHRSSAFEAGQFIMDYLKTRAPFWKREATPEGDRWVEARESDQQAAKRW 149
2 -75.200d2q5we1 d.41.5.0 (E:2-137) automated matches {Staphylococcus aureus [TaxId: 1280]}  ali model 3D-neighbors follow..  32  2..KQFEIVIEPIQTEQYREFT-INEYQGAVVVFTGHVREWTKGVKTEYLEYEAYIPMAEKKLAQIGDEINEKWPGTITSIVHRIGPLQISDIAVLIAVSSPHRKDAYRANEYAIERIKEIVPIWKKEIWEDGSKWQGH........... 136
3 -70.000d4ap8a_ d.41.5.0 (A:) automated matches {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  30  6SKDVINFTAEKLSVDEVSQLV-ISPLCGAISLFVGTTRNNFEGKKVISLEYEAYLPMAENEVRKICSDIRQKWPVKHIAVFHRLGLVPVSEASIIIAVSSAHRAASLEAVSYAIDTLKAKVPIWKKEIYE................... 134
4 -69.900d2wp4a_ d.41.5.0 (A:) automated matches {Mycobacterium tuberculosis [TaxId: 1773]}  ali model 3D-neighbors follow..  36  3...YCRLTDQPLSVDEVLAAV-SGPEQGGIVIFVGNVRDHNAGHDVTRLFYEAYPPMVIRTLMSIIGRCEDKAEGVRVAVAHRTGELQIGDAAVVIGASAPHRAEAFDAARMCIELLKQEVPIWKKEFSS................... 128
5 -69.600d2omda_ d.41.5.0 (A:) automated matches {Aquifex aeolicus [TaxId: 224324]}  ali model 3D-neighbors follow..  28  7..PRVYLGHEWFGAERILSEYQVPEDCGAQVLFLGIPRNAPEGGNIEALEYEAYPEMAIKEMEKIRQETIEKFGVKEVFIHHRLGLVKIGEPSFLVLAVGGHREETFKACRYAVDETKKRVPIWKKEIFK................... 135
6 -6.460d2dy1a5 d.58.11.1 (A:570-665) Elongation factor G (EF-G) {Thermus thermophilus, EF-G-2 [TaxId: 274]}  ali model 3D-neighbors follow..  13  35...........MEQEGALSVVHAEVPLAEVLEYYKALPGLTGGAGAYTLEFSHYAEVPPHLAQRIVQERAQE............................................................................. 95
7 -6.340d2lsna1 c.55.3.1 (A:5-165) RNase H (RNase HI) {Human spumaretrovirus [TaxId: 11963]}  ali model 3D-neighbors follow..  10...........................GSAIKSPDPTKSNNAGMGIVHATYKPEYQVLNQWSIPLGNHTAQMAEIAAVE------------FACKKALKIPGPVLVITDSFYVAESANKELPYWKSN-------FVNNKKKPLKHISKW 113
8 -6.100d4hs9a_ c.69.1.18 (A:) Lipase A {Proteus mirabilis [TaxId: 584]}  ali model 3D-neighbors follow..  17  9................LVHGLAGFSEIVGFPYFYGIADATQDGHQVFTASLSAFNSNEVRQLWQFVQTILQETQTKKVNFIHSQGPLACDSVASVTSINGVNHGSEIA......................................... 112
9 -5.970d1qd1a1 d.58.34.1 (A:2-180) Formiminotransferase domain of formiminotransferase-cyclodeaminase. {Pig (Sus scrofa) [TaxId: 9823]}  ali model 3D-neighbors follow..  14  17...............EVIDAISRAVAQTPGCVLLDVDSGPSTNRTV--YTFVGRPEDVVEGALNAARAAYQLIDMSRHHGEHRMGAL---DVCPFIPVRGVTMDECVRCAQAFGQRLAEELGV.......................... 120
10 -5.840d1ew4a_ d.82.2.1 (A:) CyaY {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  10  1................................................MNDSEFHRLADQLWLTIEERLDDWDGDSDIDCEINGGVLTI---------------TFENGSKIIINRQEPLHQVWLATKQGKGDEWICDRSGET...... 86

FFAS is supported by the NIH grant R01-GM087218-01
1 3 9 5 6 0   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster

Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Ye Y, Godzik A. Comparative analysis of protein domain organization. Genome Res. 2004 Mar;14(3):343-53.