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Query: d1gkub1 c.37.1.16 (B:6-250) Helicase-like "domain" of reverse gyrase {Archaeoglobus fulgidus [TaxId: 2234]}, from SCOP207

Results of FFAS03 search in SCOP207
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst AAAAAAAAAAAAAASLCLFPEDFLLKEFVEFFRKCVGEPRAIQKMWAKRILRKESFAATAPTGVGKTSFGLAMSLFLALKGKRCYVIFPTSLLVIQAAETIRKYAEKAGVGTENLIGYYHGRIPKREKENFMQNLRNFKIVITTTQFLSKHYRELGHFDFIFVDDVDAILKASKNVDKLLHLLGFHYDLKTKSWVGEARGCLMVSTATAKKGKKAELFRQLLNFDIGSSRITLast
1 -93.400d1gkub1 c.37.1.16 (B:6-250) Helicase-like "domain" of reverse gyrase {Archaeoglobus fulgidus [TaxId: 2234]}  ali model 3D-neighbors  100  1AAAAAAAAAAAAAASLCLFPEDFLLKEFVEFFRKCVGEPRAIQKMWAKRILRKESFAATAPTGVGKTSFGLAMSLFLALKGKRCYVIFPTSLLVIQAAETIRKYAEKAGVGTENLIGYYHGRIPKREKENFMQNLRNFKIVITTTQFLSKHYRELGHFDFIFVDDVDAILKASKNVDKLLHLLGFHYDLKTKSWVGEARGCLMVSTATAKKGKKAELFRQLLNFDIGSSRIT 232
2 -58.000d3bera_ c.37.1.0 (A:) automated matches {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  19  1...TEASQPIVEEEETKTFKDLGVTDVLCECDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALLETPQALVLTPTRELAFQISEQFEALGSSIGVQSAVIV----GGIDSMSQSLALA--KKPHIIIATPGRLIDHLENLRALKYLVMDEADRILN-----------MDFETEVDKILKVIPRDRKTFLFSATMTKKVQKLQRAALKN......... 212
3 -57.000d1q0ua_ c.37.1.19 (A:) Probable DEAD box RNA helicase YqfR {Bacillus stearothermophilus [TaxId: 1422]}  ali model 3D-neighbors follow..  20  1................TQFTRFPFQPFIIEIKTLRFYKPTEIQERIIPGALRGESMVGQSQTGTGKTHAYLLPIMEKIRAEVQAVITAPTRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKALEKLN--VQPHIVIGTPGRINDFIREVHTAHILVVDEADLMLD-----------MGFITDVDQIAARMPKDLQMLVFSATIPEKLKPFLKKYMEN......... 202
4 -57.000d5gvra_ c.37.1.0 (A:) automated matches {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  16  1.ILVEGDGIPPP---IKSFKEMKFPAAILRLKKKGIHHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPVIMFCLEGPYGLIICPSRELARQTHGILEYYCRLLQEDSSPLLALCIGGMSVKEQMETIR--HGVHMMVATPGRLMDLLQSLDICRYLALDEADRMID-----------MGFEGDIRTIFSYFKGQRQTLLFSATMPKKIQNFAKSALVTINVGRAG.. 234
5 -56.600d2pl3a1 c.37.1.0 (A:47-278) automated matches {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  20  9..RLMQNYEKINVNEITRFSDFPLSKKTLKLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLEALYRGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLII----GGKDLKHEAERI---NNINILVCTPGRLLQHMDEATDLQMLVLDEADRILD-----------MGFADTMNAVIENLPKKRQTLLFSATQTKSVKDLARLSLKN......... 224
6 -56.600d2z0ma1 c.37.1.0 (A:1-192) automated matches {Sulfolobus tokodaii [TaxId: 111955]}  ali model 3D-neighbors follow..  21  6...........................EQAIREMGFKNFTEVQSKTIPLMLQGKNVVVRAKTGSGKTAAYAIPIL---ELGMKSLVVTPTRELTRQVASHIRDIGRYMDTKVAEVY----GGMPYKAQINRV---RNADIVVATPGRLLDLWSKLSSFEIVIIDEADLMFE-----------MGFIDDIKIILAQTSNRKITGLFSATIPEEIRKVVKDFITN......... 184
7 -56.500d3dkpa1 c.37.1.0 (A:139-378) automated matches {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  19  11.IHVQGTDLPDPIATFQQLDQEYKINSLQNILDAGFQMPTPIQMQAIPVMLHGRELLASAPTGSGKTLAFSIPILMQLKKGFRALIISPTRELASQIHRELIKISEGTGFRIHMIHKAAVAAKKFGPKSS-----KKFDILVTTPNRLIYLLKDLASVEWLVVDESDKLFEDGK--------TGFRDQLASIFLACSHKVRRAMFSATFAYDVEQWCKLNLISVSIGA.... 240
8 -56.000d3iuya1 c.37.1.0 (A:213-439) automated matches {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  17  31...........................LKSIIRVGILKPTPIQSQAWPIILQGIDLIVVAQTGTGKTLSYLMPGFIHLDNGPGMLVLTPTRELALHVEAECSKYSY-KGLKSICI----YGGRNRNGQ--IEDISKGVDIIIATPGRLNDLQMNLRSITYLVIDEADKMLD-----------MEFEPQIRKILLDVRPDRQTVMTSATWPDTVRQLALSYLKD......... 221
9 -55.900d3mwja_ c.37.1.0 (A:) automated matches {Thermus thermophilus [TaxId: 262724]}  ali model 3D-neighbors follow..  18  2.................EFKDFPLKPEILELHGRGLTTPTPIEAAALPLALEGKDLIGQARTGTGKTLAFALPIAERLARKPRALVLTPTRELALQVASELTAVAPHLK------VVAVYGGTGYGKQKEALL--RGADAVVATPGRALDYLRQLSRVEVAVLDEADEMLS-----------MGFEEEVEALLSATPPSRQTLLFSATLPSWAKRLAERYMKN......... 199
10 -55.400d2i4ia3 c.37.1.0 (A:168-406) automated matches {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  17  1.VEATGNNCPPH---IESFSDVEMGEIIMGIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYSYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVV----YGGADIGQQ--IRDLERGCHLLVATPGRLVDMMEGLDFCKYLVLDEADRMLD-----------MGFEPQIRRIVEQDKGVRHTMMFSATFPKEIQMLARDFLDEY........ 233
11 -54.800d4ct4b1 c.37.1.0 (B:95-301) automated matches {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  18  2................NEFEDYCLKRELLMIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLKDNIQAMVIVPTRELALQVSQICIQVSKHMG---GAKVMATTGGTNLRDDIMRLD--DTVHVVIATPGRILDLIKKVDHVQMIVLDEADKLLS-----------QDFVQIMEDIILTLPKNRQILLYSATFPLSVQKFMNSHLQK......... 200
12 -54.700d1qdea_ c.37.1.19 (A:) Initiation factor 4a {Baker`s yeast (Saccharomyces cerevisiae) [TaxId: 4932]}  ali model 3D-neighbors follow..  18  7.............KVVYKFDDMELDENLLRVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDKAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACI----GGTSFVEDAEGL---RDAQIVVGTPGRVFDNIQRTDKIKMFILDEADEMLS-----------SGFKEQIYQIFTLLPPTTQVVLLSATMPNDVLEVTTKFMRN......... 206
13 -53.800d1t6na_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  15  1................SGFRDFLLKPELLRIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEGQVSVLVMCHTRELAFQISKEYERFSKYMP---NVKVAVFFGGLSIKKDEEVLKK-NCPHIVVGTPGRILALARNLKHIKHFILDECDKMLEQ----------LDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQD......... 201
14 -52.600d3peya1 c.37.1.0 (A:91-286) automated matches {Baker`s yeast (Saccharomyces cerevisiae) [TaxId: 4932]}  ali model 3D-neighbors follow..  15  1...............AKSFDELGLAPELLKIYAMKFQKPSKIQERALPLLLHNRNMIAQSQSGTGKTAAFSLTMLTRVNASPQAICLAPSRELARQTLEVVQEMGKFTKITSQLIV---PDSFEKNKQI-------NAQVIVGTPGTVLDLMRRLQKIKIFVLDEADNMLDQ----------QGLGDQCIRVKRFLPKDTQLVLFSATFADAVRQYAKKIV........... 196
15 -52.100d2oxca_ c.37.1.0 (A:) automated matches {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  14  1................ADFESLLLSRPVLELRAAGFERPSPVQLKAIPLGRCGLDLIVQAKSGTGKTCVFSTIALDSLNLSTQILILAPTREIAVQIHSVITAIGIKME---GLECHVFIGGTPLSQDKTRL---KKCHIAVGSPGRIKQLIELPGSIRLFILDEADKLLEEG----------SFQEQINWIYSSLPASKQMLAVSATYPEFLANALTKYMRD......... 199
16 -26.900d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]}  ali model 3D-neighbors follow..  16  18..............................LKEEGIEELFPPQAEAVEKVFSGKNLLLAMPTAAGKTLLAEMAMVREAIKGGKSLYVVPLRALAGEKYESFKKWEK-IGLRIGISTG---------DYESRDEHLGDCDIIVTTSEKIRNRASWIKAVSCLVVDEIHLLDSEKRGLEILVTKM----------RRMNKALRVIGLSATAPN..................... 184
17 -25.600d1rifa_ c.37.1.23 (A:) DNA helicase UvsW {Bacteriophage T4 [TaxId: 10665]}  ali model 3D-neighbors follow..  18  113.....................................EPHWYQKDAVFEGLVNRRRILNLPTSAGRSIQALLARYYLENYEGKILIIVPTTALTTQMADDFVDYRLFSHAM----IKKIGGGASKDDKYKNDA-----PVVVGTWQTVVKQPKEFSQFGMMMNDECHLA----------------GKSISSIISGLNNCMFKFGLSGSLRDG.................... 265
18 -23.300d1yksa1 c.37.1.14 (A:187-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]}  ali model 3D-neighbors follow..  16  1................................................MLKKGMTTVLDFHPGAGKTRRFLPQILAEARRRLRTLVLAPTRVVLSEMKEAFHGLDVKFHTQAF-----------------SAHGSGREVIDAMCHATLTYRMLEVVNWEVIIMDEAHFLDPASIAARGWAAHRARANESA-----------TILMTATPP...................... 138
19 -22.200d2fz4a1 c.37.1.19 (A:24-229) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]}  ali model 3D-neighbors follow..  20  70.....................................SLRDYQEKALERWLVDKRGCIVLPTGSGKT---HVAMAAINELSTPTLIVVPTLALAEQWKERLGIFGEEY-------VGEFSGRIKELK-----------PLTVSTYDSAYVNAEKLNRFMLLIFDEVHHL--PAESYVQIAQMS--------------IAPFRLGLTAT........................ 204
20 -20.400d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]}  ali model 3D-neighbors follow..  17  9.....................................QPRIYQEVIYAKCKETNCLIVL-PTGLGKTLIAMMIAEYRLTKGGKVLMLAPTKPLVLQHAESFRRL-------FNLPPEKIVALTGEKSPEERSKAWARAKVIVATPQTIENDLLALEDVSLIVFDEAHRAVGNYAYV-----------FIAREYKRQAKNPLVIGLTAS-PGSTPEKIMEVINNLGIEHIEY. 187
21 -20.100d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]}  ali model 3D-neighbors follow..  16  7...................................................SFQVAHLHAPTGSGKST----VPAAYAAQGYKVLVLNPSVAATLGFGAYMSK------------------GVDPNIRTGVRTITTGSPITYSTYGKLADGGCSGGAYDIIICDECH---STDATSILGIGTV-------LDQAETAGARLVVLATAT........................ 135
22 -19.900d1gm5a3 c.37.1.19 (A:286-549) RecG helicase domain {Thermotoga maritima [TaxId: 2336]}  ali model 3D-neighbors follow..  20  71.........................KLAEEFIKSLPFKLTNAQKRAHQEIRNDMI-LLQGDVGSGKTVVAQLAILDNYEAGFQTAFMVPTSILAIQHYRRTVESFSKFNIHVALLI----GATTPSEKEKIKSGLRNIDVVIGTHALIQEDVH-FKNLGLVIIDEQHR----------------FGVKQREALMNKGKMVDTLVMSATIPRSMALAFYGDL........... 254
23 -19.600d1oywa2 c.37.1.19 (A:1-206) RecQ helicase domain {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  14  22..................................GYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLL---NGLTVVVSPLISLMKDQVDQLQANG--------VAAACLNSTQTREQQLEVMTRTGQIRLLYIAPERLMLEHLAHWNPVLLAVDEAHCISQWGHD---------FRPEYAALGQLRQPTLPFMALTATADDTTRQDIVRLL........... 196
24 -16.900d2gk6a1 c.37.1.19 (A:295-324,A:416-702) Upf1 {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  22  91..........................................QVYAVKTVLQRPLSLIQGPPGTGKTVTSATIVYHLARQGNPVLVCAPSNIAVDQLTEKIHQTGLKV--ETGELSSADEKRYRALKRTAERELLMNADVICCTCVGAGDPRLAKMQFRSILIDESTQATEPECMVPVVLILVGDHCQL----------GPVVMCKKAAKAGLSQSLFERLVVLGIRPIRLQ 315
25 -16.100d5y4za1 c.37.1.14 (A:178-481) automated matches {Zika virus (strain mr 766) [TaxId: 64320]}  ali model 3D-neighbors follow..  12  4...............................................PSMLKKKQLTVLLHPGAGKTRRVLPEIVREIKKRLRTVILAPTRVVAAEMEEALRG------------------PVRYMTTAVNVTHSGTEIVDLMCHATFTSRLLQVPNYNLNIMDEAHFT--------SSIAARGYISTRVE-----MGEAAAIFMTATPP...................... 143
26 -15.900d2eyqa3 c.37.1.19 (A:546-778) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  17  55.....................................ETTPDQAQAINAVLSDMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAE--GKIDILIGT-HKLLQSDVKFKDLGLLIVDEEHR----------------FGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSI...... 230
27 -13.800d3kx2a1 c.37.1.19 (A:1-270) Pre-mRNA splicing factor DEAH RNA helicase Prp43 {Baker`s yeast (Saccharomyces cerevisiae) [TaxId: 559292]}  ali model 3D-neighbors follow..  14  96.......................................HAQRDEFLKLYQNNQIMVFVGETGSGKTT-FVLFDEMPHLENTQVACTQPRRVAAMSVAQRVAE------------MDVKLGEEVGYSIRFENKTSNKTILKYMTDGMLLREAMELSRYSCIILDEAH---ERTLATDILMGLL-------KQVVKRRPDLKIIIMSATLDAEKFQRYFNDAPLLAV...... 267
28 -12.900d1tf5a3 c.37.1.19 (A:1-226,A:349-395) Translocation ATPase SecA, nucleotide-binding domains {Bacillus subtilis [TaxId: 1423]}  ali model 3D-neighbors follow..  21  80.....................................FPFKVQLMGGVALHDGN--IAEMKTGEGKTLTSTLPVYLNALTGKGVHVVTVNEYLASRDAEQMGKIFEFLGLTV--------GLNLNSMSKDEKREAYAADITYSTNNELGFDYLRQRPLHFAVIDEVDSILIDEARTPLIIS................................................... 224
29 -11.900d1z3ix2 c.37.1.19 (X:92-389) Rad54-like, Rad54L {Zebrafish (Danio rerio) [TaxId: 7955]}  ali model 3D-neighbors follow..  11  58........................................PHQREGVKFLWDSYGCIMADEMGLGKTLQCITLIWTLLKQSPKVIVVSPSSLVRNWYNEVGKWLGGRVQPVAIDGGSKDEIDSKLVNFISQQGMRIPTPILIISYETFRLHAEVLHKVGLVICDEGHRLKNSDNQTYLALNSM-------------NAQRRVLISGTPIQNDLLEY................ 238
30 -11.500d1ihua2 c.37.1.10 (A:308-583) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  16  23.......................................................IMLMGKGGVGKTTMAAAIAVRLADMGFDVHLTTPAAHLSMTLNGSLNNLQVSRIDPHEETERYRQHVLETKGKELDEAGKRLLEEDLRSPCAFSRVIRE-AGKRFVVMDTAPLLLDATGAYHREIKKMGEKGHFTTPMMLLQDPERTKVLLVTLPETTPVLEAANLQA......... 205
31 -11.400d4pj3a3 c.37.1.19 (A:416-492,A:662-1133) Pre-mRNA splicing factor Cwf11 / Aquarius {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  14  220.......................................THTQIEAIRAGMQPGLTMVVGPPGTGKTAVQIISNIYHNFPEQRTLIVTHSNQALNQLFEKIMA----LDIDERHLLRLGHGEEELETEKDFSRLVKEAKIIAMTCTHAALKRHDLVKYDNILMEEAAQILEGFSRLKRWI-MIGDHHQLPPVIKNMAFQKYSNMEQSLFTRFVRV................. 543
32 -11.300d1z63a1 c.37.1.19 (A:432-661) Helicase of the SNF2/Rad54 hamily {Sulfolobus solfataricus [TaxId: 2287]}  ali model 3D-neighbors follow..  18  3...................................LLEPYNIKANLRPYQIKGFSWMLADDMGLGKTLQTIAVFSDAKKENELSLVICPL-SVLKNWEEELSKFAPHLR------FAVFHEDRSKIK-------LEDYDIILTTYAVLLRDTRLKEEWKYIVIDEAQNIKNPQTKIFKAVKEL................................................. 150
33 -11.200d3jb9x3 c.37.1.19 (X:385-460,X:619-1044) Pre-mRNA splicing factor Cwf11 / Aquarius {Schizosaccharomyces pombe 972h- [TaxId: 284812]}  ali model 3D-neighbors follow..  17  187.......................................NDKQLESILRGSQPGLTMVNGPTRCGKHVCKLLEVLQDTSPNDRTVVLSDSNFSMNTLFTLLEKYGELEYMFQQLEEIRPFGLLRYYEDQELYALCQQSRIIGCTWTSLSTRLGTLKCFNNLIVMNSQNISEEPTGFDRLV-LLGNQYLTSGNQDINNTSNGSLF............................ 488
34 -11.100d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  17  153..........................................QKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQERCRIRLAAPTGKAAARLTESLGKALRQLPL-------------TDEQKKRIPEDASTLHRLLGASQRLRHHAGNPLHLDVLVVDEASRLIDALPDHARVI-FLGDRDQLASV........................................ 303
35 -10.100d1ihua1 c.37.1.10 (A:1-296) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  15  11.......................................................LFFTGKGGVGKTSISCATAIRLAEQGKRVLLVSPASNVGQVFSQTIGNTIQAIASVPGLSALEIDPQAAAQQNEQLSGACTTEIAAFDEFTGLLTDASLLTRFDHIIFDTADSNPEGASCLGPMAGLEKQREQYAYAVEALSDPKRTRLVLVARLQKSTLQEVARTHL......... 220
36 -9.730d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus elongatus PCC 7942 [TaxId: 1140]}  ali model 3D-neighbors follow..  11  23.................................................LPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEETPQDIIKNARSFGWDLAKLVDEGKLFILDASPDPEGQEVVGGFDLSALIERINYAIQKY-----RARRVSIDSVTSVFQQYDASSVVRREL------FRLVARLKQIGATTVMTT......................... 169
37 -9.690d1g5ta_ c.37.1.11 (A:) ATP:corrinoid adenosyltransferase CobA {Salmonella typhimurium [TaxId: 90371]}  ali model 3D-neighbors follow..  12  5.......................................................IIVFTGNGKGKTTAAFGTAARAVGHGKNVGVV--------QFIKGTWPNGERNLLEPHGVEFQVMATGFTWETQNREADTAACMAVWQHGKRMLAD----PLLDMVVLDELTYMVAYD-PLEEVISALNARPGHQTVIITGRGCHRDILDLADTVSELRPV................ 154
38 -9.370d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}  ali model 3D-neighbors follow..  18  13.......................................................WFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAR-EQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKARLEARDLILVDTAGRLQIDEPLMGELALLVLDAMQEALSVARAFDEKVGVTGL............................................... 154
39 -9.340d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus elongatus PCC 7942 [TaxId: 1140]}  ali model 3D-neighbors follow..  14  23.................................................FFKDSIILATGATGTGKTLLVSRFVENACANKERAILFA-YEESRAQLLRNAYSWG----------------DFEEMERQNLLKIVCAYPESAGLEDHLQIIKSEINDFARIAIDSLSALARGVSNNA-------FRQFVIGVTGYAKQEEITGLFTNTSDQF.................... 164
40 -9.330d1c4oa2 c.37.1.19 (A:410-583) Nucleotide excision repair enzyme UvrB {Thermus thermophilus [TaxId: 274]}  ali model 3D-neighbors follow..  11  15................................................................NQILDLMEGIRERAARGERTLVTVLTVRMAEELTSFLVEHG--------IRARYLHHELDAFKRQALIRRLGHYDCLVGIN--LLREGLDIPEVSLVAILDADKE----RSERSLIQTIG................................................ 125
41 -9.250d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  12  12...................................FAAAPPPLDYVLPNMVAGTVGALVSPGGAGKSMLALQLAAQIAGLPTGPVIYLPAEDPPTAIHHRLHALGAHLSAEERQAV----------ADGLLIQPLIGSLPNIMAPEWFDGLKRAAEGRRLMVLDTLRRFHIEEENASGPMAQV-----IGRMEAIAADTGCSIVFLHHASKGAAMMGAGDQQQASRGSSVLV 202
42 -9.230d2vhja_ c.37.1.11 (A:) automated matches {Pseudomonas phage [TaxId: 161736]}  ali model 3D-neighbors follow..  15  122...................................................ASGMVIVTGKGNSGKT------------------------PLVHALGEALGGKDKYATVRFGEPLSGYNTDFNVFVD---------------------DIARAMLQHRVIVIDSLKNVITTSGGISRGAFDL-----LSDIGAMAASRGCVVIASLNPTSNDDKI................ 242
FFAS is supported by the NIH grant R01-GM087218-01
1 4 7 2 8 5   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Godzik A. Discovering new genes with advanced homology detection. Trends Biotechnol. 2002 Aug;20(8):315-6.