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Query: d1gsoa1 b.84.2.1 (A:328-426) Glycinamide ribonucleotide synthetase (GAR-syn), C-domain {Escherichia coli [TaxId: 562]}, from SCOP207

Results of FFAS03 search in SCOP207
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst ERASLGVVMAAGGYPGDYRTGDVIHGLPLEEVAGGKVFHAGTKLADDEQVVTNGGRVLCVTALGHTVAEAQKRAYALMTDIHWDDCFCRKDIGWRAIERLast
1 -65.900d1gsoa1 b.84.2.1 (A:328-426) Glycinamide ribonucleotide synthetase (GAR-syn), C-domain {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors  100  1ERASLGVVMAAGGYPGDYRTGDVIHGLPLEEVAGGKVFHAGTKLADDEQVVTNGGRVLCVTALGHTVAEAQKRAYALMTDIHWDDCFCRKDIGWRAIER 99
2 -57.000d3lp8a3 b.84.2.0 (A:325-419) automated matches {Ehrlichia chaffeensis [TaxId: 205920]}  ali model 3D-neighbors follow..  33  1KKAALCVVVASRGYPGEYKKNSIINGIENIEKLPNVQLLHAGTRREGNNWVSDSGRVINVVAQGENLASAKHQAYAALDLLDWPDGIYRYDIG...... 93
3 -51.500d1vkza1 b.84.2.1 (A:314-399) Glycinamide ribonucleotide synthetase (GAR-syn), C-domain {Thermotoga maritima [TaxId: 2336]}  ali model 3D-neighbors follow..  38  1.GFAVDVVLAARGYPDAPEKGKEITLPE-----EGLIFFAGVAE-KDGKLVTNGGRVLHCMGTGETKEEARRKAYELAEKVHFEGKTYRRDIA...... 86
4 -7.260d5c2za1 b.47.1.1 (A:32-278) automated matches {Staphylococcus aureus [TaxId: 1280]}  ali model 3D-neighbors follow..  10  142VDVQKGDKISLLGYPYNTSTHSLYKSQIEVFNNQTFQYFAYTE-NSGSGIFNLHGELVGIKGGQYGLPFGILFNRQIGSSYSTDKTVTTLAIDLK.... 240
5 -6.490d1kjqa1 b.84.2.1 (A:319-392) Glycinamide ribonucleotide transformylase PurT, C-domain {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  21  36...............................................GKPEIDGSRRLGALATAESVVDAIERAKHAAGQVKVQG.............. 74
6 -6.450d1agja_ b.47.1.1 (A:) Epidermolytic (exfoliative) toxin A {Staphylococcus aureus [TaxId: 1280]}  ali model 3D-neighbors follow..  148NDLKDGDKLELIGYPFDHKVNQMHRSEIELTTLSRGLRYYGFTVNSGSGIFNSNGELVGIHSSKVSHLDREHQINYGVG.................... 228
7 -6.190d3by8a_ d.110.6.1 (A:) automated matches {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  17  54......VVTDMQSHPEAQRIGQPFKGDDILKALNGEENVAAQALRVFTPIYDENHKQIGVVAIGLELSRVTQQIND....................... 133
8 -5.960d2o8la_ b.47.1.1 (A:) V8 protease {Staphylococcus aureus [TaxId: 1280]}  ali model 3D-neighbors follow..  15  129........ITVTGYPGDKPVATMWESKGKITYLKGEAMQYDLSTNSGSPVFNEKNEVIGIHWGGVP................................. 189
9 -5.630d2vida_ b.47.1.0 (A:) automated matches {Staphylococcus aureus [TaxId: 1280]}  ali model 3D-neighbors follow..  15  108AGAKAGERIKVIGYPHPYKNKYVLSTGPVMSVEGSSIVYSAHTENSGSPVLNSNNELVGIHFASDVKNDDNRN.......................... 184
10 -5.590d1nzia1 b.23.1.1 (A:1-117) Complement C1S component {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  10  1.EPTMYGEILSPNYPQAYPSEVEKS-----------------------DIEVPEGYGIHLYFTHLDIELSENCAYDSVQ.................... 56

FFAS is supported by the NIH grant R01-GM087218-01
1 4 7 6 0 7   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Pio F, Pawlowski K, Godzik A. Saturated BLAST: an automated multiple intermediate sequence search used to detect distant homology. Bioinformatics. 2000 Dec;16(12):1105-10.