current user: public

If you have questions about the server, please let us know.

Query: d1h21a_ a.138.1.3 (A:) Dimeric di-heme split-soret cytochrome c {Desulfovibrio desulfuricans, ATCC 27774 [TaxId: 876]}, from SCOP207

Results of FFAS03 search in SCOP207
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130    .  140    .  150    .  160    .  170    .  180    .  190    .  200    .  210    .  220    .  230    .  240
# Score Template Links and tools%idFirst GRFDQVGGAFGWKPHKLDPKECAQVAYDGYWYKGFGCGFGAFYSIVGLMGEKYGAPYNQFPFAMLEANKGGISDWGTICGALYGAAATFSLFWGRKEVHPMVNELFRWYEVTKLPIFNPGDAAQGVKGDLPMSASDSVLCHISVSKWCYENKIEATSKQRSERCGRLTADAAFKAAEIINTKIDQGKDFKSTFPMQASVSSCGECHMTKGNDANWAKGIMDCTPCHSGTAATQNKFVNHPLast
1 -94.500d1h21a_ a.138.1.3 (A:) Dimeric di-heme split-soret cytochrome c {Desulfovibrio desulfuricans, ATCC 27774 [TaxId: 876]}  ali model 3D-neighbors  100  1GRFDQVGGAFGWKPHKLDPKECAQVAYDGYWYKGFGCGFGAFYSIVGLMGEKYGAPYNQFPFAMLEANKGGISDWGTICGALYGAAATFSLFWGRKEVHPMVNELFRWYEVTKLPIFNPGDAAQGVKGDLPMSASDSVLCHISVSKWCYENKIEATSKQRSERCGRLTADAAFKAAEIINTKIDQGKDFKSTFPMQASVSSCGECHMTKGNDANWAKGIMDCTPCHSGTAATQNKFVNHP 240
2 -13.700d1sp3a_ a.138.1.3 (A:) Putative Cytochrome c {Shewanella oneidensis [TaxId: 70863]}  ali model 3D-neighbors follow..  10  5...................KDVLKGPFTTGSEVTTQCLT---------------------------------------CHEEQATDMMKTSHWTWELEQKLPDRTVVRGKKNSINNFCVAIS---------SNEPRCTSCHAGYGWKDNTFDFKDKTKVDCLICHDTTGTYVKDPAGAGEPMAKLDLAKIAQNVGAPVRDNCGSCHFYGGGGMDSDGNNFQCQNCHTTEK.......... 189
3 -12.600d1m1qa_ a.138.1.3 (A:) Flavocytochrome c3 (respiratory fumarate reductase), N-terminal domain {Shewanella oneidensis [TaxId: 70863]}  ali model 3D-neighbors follow..  20  4...............................................................................................................................................................................................LSDFHAESGGCESCHKDGTPSADGAFEFAQCQSCHGKLSEMDAVHKPH. 51
4 -12.400d2bq4a_ a.138.1.0 (A:) automated matches {Desulfovibrio africanus [TaxId: 873]}  ali model 3D-neighbors follow..  19  28............................................................................................................................KAHASLGTDAAACQKCHH------KWDGKSEIGGCATEGCHADTTSFKATEKDPKFLMTA-----------SKSPMSCQGCHK-EMKTAKKTTGPTACAQCHN............. 114
5 -12.400d1gyoa_ a.138.1.1 (A:) Cytochrome c3 {Desulfovibrio gigas, di-tetraheme cytochrome c3 [TaxId: 879]}  ali model 3D-neighbors follow..  15  29....................................................................................................................................AKHRNVSCVSC--------HHMFDGCGDFQKCADCHIDRDD----------RSYERGFYKAWHSESEISCRGCHKAMKAKNEQTGPIGCLQGCHEA............ 106
6 -12.300d1i77a_ a.138.1.1 (A:) Cytochrome c3 {Desulfovibrio desulfuricans, different strains [TaxId: 876]}  ali model 3D-neighbors follow..  17  42...................................................................................................................................................................................................SFAKCGSSGCHDDLAGKQGKELKHTNCIGCHSKVVEGKPELKKHP 107
7 -12.300d1ofwa_ a.138.1.1 (A:) Nine-heme cytochrome c {Desulfovibrio desulfuricans, ATCC 27774 [TaxId: 876]}  ali model 3D-neighbors follow..  21  220...................................................................................................................................KPEILCATCHH-----------RSPLSLTPPKCGSC------------HTKEIDKANPGRPNLMAAYHLQCMGCHKGMDVA---RPRDTDCTTCHKAAPK......... 293
8 -12.200d1ft5a_ a.138.1.3 (A:) Cytochrome c554 {Nitrosomonas europaea [TaxId: 915]}  ali model 3D-neighbors follow..  11  7.......................................................................................................................................GRKKC---------------------SSCKDTAHAKAMESLKPNVKKEAKQKAKLDPAKDYTQDKDCVGCHVDGFGSPKPMLTGVGCESCHGPGRNFRGDHRK.. 104
9 -12.200d1aqea_ a.138.1.1 (A:) Cytochrome c3 {Desulfovibrio desulfuricans, different strains [TaxId: 876]}  ali model 3D-neighbors follow..  14  27..............................................................................................................................FNHASHMDIACQQCH---------HTVPDTYTIESCMTEGCHDNIK--------ERTEISSVERTFHTTKDSEKSCVGCH-RELKRQGPSDAPLACNSCHVQ............ 110
10 -12.100d1qo8a1 a.138.1.3 (A:2-102) Flavocytochrome c3 (respiratory fumarate reductase), N-terminal domain {Shewanella frigidimarina [TaxId: 56812]}  ali model 3D-neighbors follow..  17  1...........................................................................................................................TPDMGSFHADMGSCQSCHA------KPIKVTDSETHENAQCKSCHGEYAELAND---------KLQFDPHNSHLGDINCTSCHKGHEEPKFY------CNECHSFDIK......... 87
11 -12.100d4n4na_ a.138.1.3 (A:) automated matches {Nitrosomonas europaea [TaxId: 915]}  ali model 3D-neighbors follow..  13  18..............GKATPKETYEALVKRYKDPAHGAGKGTMGDYWEPIAISIYMDPNTFYKPPVSPKEVAERKDCVECHSDETPVWVRAWKRSTHANLDKIRDPLYYKKGKLEEVENNLRSMGKLGEKETLKEVGCIDCHVDVNKKDKADHTKDIRMPTADTCGTCALDYTANIETTVWAAMPQREVAEGCTMCHTNQNKCDNCHTRHEFSAAESRKPEACATCHSGVDH......... 268
12 -12.000d1w7oa_ a.138.1.1 (A:) Cytochrome c3 {Desulfovibrio baculatus (Desulfomicrobium baculatus) [TaxId: 899]}  ali model 3D-neighbors follow..  15  37....................................................................................................................................SKHATVECAQ-----CHHTLEADGGAVKKCTTSGCHDSL---------EFRDKANAKDIKLVENAYHTQCIDCH-KALKKDKKPTGPTACGKCHTTN........... 118
13 -11.900d1y0pa1 a.138.1.3 (A:1-102) Flavocytochrome c3 (respiratory fumarate reductase), N-terminal domain {Shewanella frigidimarina [TaxId: 56812]}  ali model 3D-neighbors follow..  13  1...........................................................................................................................ADNLAEFHVQNQECDSCHT------DGELSNDSLTYENTQCVSCHGTLAEVAET------TKHEHYNAHASHFPGEVACTSCHSAHEKSMVY------CDSCHSFD........... 89
14 -11.300d3caoa_ a.138.1.1 (A:) Cytochrome c3 {Desulfovibrio africanus [TaxId: 873]}  ali model 3D-neighbors follow..  12  1.....................................................................................................XEDMTHVPTDAFGKLERPAAVFNHDEHNEKAGIESCNACHHVW----VNGVLAEDEDSVGTPCSDCHALEQDGDTPGLQDAYH---------------QQCWGCHEKQA------KGPVMCGECHVKN........... 103
15 -11.000d1rwja_ a.138.1.1 (A:) Cytochrome c7 (cytochrome c551.5, PpcA) {Geobacter sulfurreducens, GSU1996 [TaxId: 35554]}  ali model 3D-neighbors follow..  24  31..................................................................................................................................................................KCNECHTKLFAY----------KAGAKRFTMADMDKGKSCGACHNGKDAF----SSASDCGKCH.............. 80
16 -10.800d1ogyb_ a.138.1.3 (B:) Periplasmic nitrate reductase subunit NapB {Rhodobacter sphaeroides [TaxId: 1063]}  ali model 3D-neighbors follow..  23  48................................................................................................................................................................................................YQLSVNANRCLECHRRQYSGLVAAPRRYFCTACHVPQTN......... 106
17 -10.800d2cvca_ a.138.1.1 (A:) 16-heme cytochrome c HmcA {Desulfovibrio vulgaris [TaxId: 881]}  ali model 3D-neighbors follow..  11  40...................................DCAAC------KSKDGKMSLKFMRLDDNSAAELKEIYHANCIGCHTDLAKAGKKTGPQDGECRSCHNPKPSAASSWKEIGFDKSLHYRHVASKAIKPVGDPQKNCGACHHVYDEASKKLVWGKNKEDSCRAC---------------HGEKPVDKRPALDTAAHTACISCHMDVAKT-KAETGPVNCAGCHAPEAQ......... 214
18 -10.400d1oaha_ a.138.1.3 (A:) Cytochrome c nitrite reductase {Desulfovibrio desulfuricans [TaxId: 876]}  ali model 3D-neighbors follow..  10  108...................................TCWNCKTPKMMEWVSQYGDKFWSMDVNEFRAKDKINAHDETIGCANCHDP-----------------TMELRLYSEPLKDWLKRSGKDWQKMSRNEKRTLVCAQCHVFNPEDMYQYYKGHGAKGPDGKPGPFVDWVHAASKVPMIKMQHPEYETFQDGPHGAAGVSCADCHSHWMTSPMKDPEMRACRQCHADKTG......... 321
19 -10.100d3t6ec_ a.138.1.2 (C:) Photosynthetic reaction centre (cytochrome subunit) {Rhodopseudomonas viridis [TaxId: 1079]}  ali model 3D-neighbors follow..  63..............GNLTEAEFLRTAITEWVSPQEGCTYC--LASEAKYPYVVARRMLEMTRAINTNWTQHVAQTGVTCYTC-----------GTPLPPYVRYLEPTLPLNNRETPTHVERVETRS--GYVVRLAKYTAYSALNYDPFTMFLANDKRQVRVVPQTALPLVGVSRGKERRPLSDAYATFALMMSISDSLGTNCTFCHNAQTFERQGEAPQADCRTCHQGV--------TKP 315
20 -10.100d3bnja_ a.138.1.3 (A:) automated matches {Wolinella succinogenes [TaxId: 844]}  ali model 3D-neighbors follow..  13  86...........................................................................................................................................................KTGPLPSACWTCKSPDVPRIIEQDGELEYFTGKWAKYGDEIVNTIGCYNCHDDKSAELKSKVPYLDCAQCHVEF........... 182
21 -9.620d3bxua_ a.138.1.1 (A:) automated matches {Geobacter sulfurreducens}  ali model 3D-neighbors follow..  20  1...............................................................................................................................................................................ADTMTFTAKNGNVTFDHKKHQTIVPDCAVCHGKTPGKIEGFGKEMSCKGCHEEMKKGPTKCGEH. 69
22 -9.230d1j0pa_ a.138.1.1 (A:) Cytochrome c3 {Desulfovibrio vulgaris [TaxId: 881]}  ali model 3D-neighbors follow..  24  30........................................................................................................................................................................................................KCGDCHHPVNGKEDLQK--CATAGCHDNMDK......... 58

FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 3 4 1   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster

Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Robinson-Rechavi M, Godzik A. Structural Genomics of Thermotoga maritima Proteins Shows that Contact Order Is a Major Determinant of Protein Thermostability. Structure (Camb). 2005 Jun;13(6):857-60.