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Query: d1hwxa3 c.58.1.1 (A:1-208) Glutamate dehydrogenase {Cow (Bos taurus) [TaxId: 9913]}, from SCOP207

Results of FFAS03 search in SCOP207
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst ADREDDPNFFKMVEGFFDRGASIVEDKLVEDLKTRQTQEQKRNRVRGILRIIKPCNHVLSLSFPIRRDDGSWEVIEGYRAQHSHQRTPCKGGIRYSTDVSVDEVKALASLMTYKCAVVDVPFGGAKAGVKINPKNYTDEDLEKITRRFTMELAKKGFIGPGVDVPAPNMSTGEREMSWIADTYASTIGHYDINAHACVTGKPISQGGILast
1 -110.000d1hwxa3 c.58.1.1 (A:1-208) Glutamate dehydrogenase {Cow (Bos taurus) [TaxId: 9913]}  ali model 3D-neighbors  100  1ADREDDPNFFKMVEGFFDRGASIVEDKLVEDLKTRQTQEQKRNRVRGILRIIKPCNHVLSLSFPIRRDDGSWEVIEGYRAQHSHQRTPCKGGIRYSTDVSVDEVKALASLMTYKCAVVDVPFGGAKAGVKINPKNYTDEDLEKITRRFTMELAKKGFIGPGVDVPAPNMSTGEREMSWIADTYASTIGHYDINAHACVTGKPISQGGI 208
2 -92.900d1gtma2 c.58.1.1 (A:3-180) Glutamate dehydrogenase {Pyrococcus furiosus [TaxId: 2261]}  ali model 3D-neighbors follow..  33  1........................ADPYEIVIKQLERAAQYMEISEEALEFLKRPQRIVEVTIPVEMDDGSVKVFTGFRVQHNWARGPTKGGIRWHPEETLSTVKALAAWMTWKTAVMDLPYGGGKGGIIVDPKKLSDREKERLARGYIRAIYD--VISPYEDIPAPDVYTNPQIMAWMMDEYETISRR-KTPAFGIITGKPLSI... 178
3 -87.100d1bgva2 c.58.1.1 (A:1-194) Glutamate dehydrogenase {Clostridium symbiosum [TaxId: 1512]}  ali model 3D-neighbors follow..  27  13KKYADEPEFVQTVEEVLSSLGPVVD-------------AHPEYEEVALLERMVIPERVIEFRVPWEDDNGKVHVNTGYRVQFNGAIGPYKGGLRFAPSVNLSIMKFLGFEQAFKDSLTTLPMGGAKGGSDFDPNGKSDREVMRFCQAFMTELYR--HIGPDIDVPAGDLGVGAREIGYMYGQYRKIVGG---FYNGVLTG........ 194
4 -50.900d3vpxa1 c.58.1.0 (A:1-133) automated matches {Sporosarcina psychrophila [TaxId: 1476]}  ali model 3D-neighbors follow..  24  1................................................MEIFKYMEH--QDYEQLVICQDKASGLKAIIAIHDTTLGPALGGTRMWTYASIEDALRLARGMTYKNAAAGLNLGGGKTVIIGNPKTDKNDEMFRAFGRYIEGL-------NGRYITAEDVGTTEADMDLINLETDYV...................... 133
5 -49.600d1c1da2 c.58.1.1 (A:1-148) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]}  ali model 3D-neighbors follow..  21  13................................................................TVTRFDAMTGAHFVIRLDSTQLGPAAGGTRAAQYSNLADAGKLAGAMTLKMAVSNLPMGGGKSVIALPAPRHSIDPSTW--ARILRIHAENIDKLSGNYWTGPDVNTNSADMDTLNDTT------------EFVFGRSLERGG. 145
6 -6.540d1tvia_ d.92.1.15 (A:) Hypothetical protein TM1509 {Thermotoga maritima [TaxId: 2336]}  ali model 3D-neighbors follow..  11  1...........................MIRILGEGKGSKLLENLKEKLEEIVKKEIGDVHVNVILVSEDEIKELNQQFRLTFPLMEEDVYGEIYVCPLIVEENAREFN--NTFEKELLEVVIHG---GYDHEFEDKNSKEMFEKQKKYVEEVWGEWRSNPSEDSDPGK........................................ 149
7 -6.330d3v8da1 a.104.1.0 (A:25-503) automated matches {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  14  279....RNPEAMKAATEEVKRTLENAGQKVSLEGNPICLSQAELNDLPVLDSIIKESLRLAKEDFTLHLEDGSYNIRKDDIIALYPQLMHLDPEIRYLDENGKTKTTFYCNGLKLKYYY--MPFGS--GATICPGRLFAIHEIKLMLSYFELELIEGQAKCPPLDQSRAGLGI..................................... 464
8 -6.260d1qy9a1 d.21.1.2 (A:3-129) Hypothetical protein YddE {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  17  8...................................................................................................................AFTSQPFRGNSAGVVFPADNLSEAQMQLIAREL--GHSETAFLLHSDDTPTVEVPCGHATVAAHYVRAKVLGLGNCTIWQTSLAG........ 99
9 -6.100d2ebfx3 d.3.1.17 (X:1094-1285) Dermonecrotic toxin, ToxA {Pasteurella multocida [TaxId: 747]}  ali model 3D-neighbors follow..  12  13.................................................KILGLKQFKLTAGFPTEQSR-ENSVSEDLREELMQKIDAIKNDVKMNSLVCMEAGSCDSVSPKVAARLKDMGLEAGMGGMEFSHQMHTTASFKFAGKEFAVDASHLQFVHDQLDLPVDD---------WALEIAQRNRAINPFVEYVSKTGNMLAL... 177
10 -6.030d3edna1 d.21.1.0 (A:1-131) automated matches {Anthrax bacillus (Bacillus anthracis) [TaxId: 1392]}  ali model 3D-neighbors follow..  20  11...................................................................................................................AFTNKPNMGNPAGIVLDADGLTEEEMQRIAEKV--GFNETSFVLSSEVTPGYEM....................................... 70

FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 3 4 1   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Robinson-Rechavi M, Godzik A. Structural Genomics of Thermotoga maritima Proteins Shows that Contact Order Is a Major Determinant of Protein Thermostability. Structure (Camb). 2005 Jun;13(6):857-60.