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Query: d1id0a_ d.122.1.3 (A:) Histidine kinase PhoQ domain {Escherichia coli [TaxId: 562]}, from SCOP207

Results of FFAS03 search in SCOP207
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst RELHPVAPLLDNLTSALNKVYQRKGVNISLDISPEISFVGEQNDFVEVMGNVLDNACKYCLEFVEISARQTDEHLYIVVEDDGPGIPLSKREVIFDRGQRVDTLRPGQGVGLAVAREITEQYEGKIVAGESMLGGARMEVIFGRQHLast
1 -72.700d1id0a_ d.122.1.3 (A:) Histidine kinase PhoQ domain {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors  100  1RELHPVAPLLDNLTSALNKVYQRKGVNISLDISPEISFVGEQNDFVEVMGNVLDNACKYCLEFVEISARQTDEHLYIVVEDDGPGIPLSKREVIFDRGQRVDTLRPGQGVGLAVAREITEQYEGKIVAGESMLGGARMEVIFGRQH 146
2 -57.100d1bxda_ d.122.1.3 (A:) Histidine kinase domain of the osmosensor EnvZ {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  23  7MEMADLNAVLGEVIAAESGYEREIETALY---PGSIEVKMHPLSIKRAVANMVVNAARYGNGWIKVSSGTEPNRAWFQVEDDGPGIAPEQRKHLFQPFVRGDSARTGTGLGLAIVQRIVDNHNGMLELGTSERGGLSIRAWLPV.. 149
3 -56.600d1ysra_ d.122.1.3 (A:) automated matches {Mycobacterium tuberculosis [TaxId: 1773]}  ali model 3D-neighbors follow..  27  3HVPVDITDLLDRAAHDAARIYPDLDVSL--VPSPTCIIVGLPAGLRLAVDNAIANAVKHGGALVQLSAVSSRAGVEIAIDDNGSGVPEGERQVVFERFSRGSTASHGSGLGLALVAQQAQLHGGTASLENSPLGGARLVLRLPG.. 146
4 -52.800d2c2aa2 d.122.1.3 (A:321-481) Sensor histidine kinase TM0853 {Thermotoga maritima [TaxId: 2336]}  ali model 3D-neighbors follow..  27  4REKVDLCDLVESAVNAIKEFASSHNVNVLFESNVPVEAYIDPTRIRQVLLNLLNNGVKYSKKYVKVILDEKDGGVLIIVEDNGIGIPDHAKDRIFEQFYRVDSSLTGTGLGLAITKEIVELHGGRIWVESEVGKGSRFFVWIPKDR 160
5 -39.400d2e0aa2 d.122.1.0 (A:188-386) automated matches {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  17  19....DAFECSRMLCDQYYLSSPELKLTQVNGKFPDIHIVYVPSHLHHMLFELFKNAMRATVEHIEVIVVLGKEDLTIKISDRGGGVPLRIIDRLFSYTYSTAPTPAGFGYGLPISRLYAKYFQGDLNLYSLSGYGTDAIIYLKA.. 179
6 -37.900d1r62a_ d.122.1.3 (A:) Nitrogen regulation protein NtrB, C-terminal domain {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  20  1RVTESIHKVAERVVTLVSMELPDN-VRLIRDYDPSLPLAHDPDQIEQVLLNIVRNALQALGPELTLHGERYRLAARIDVEDNGPGIPPHLQDTLFYPMV--SGREGGTGLGLSIARNLIDQHSGKIEFTSWP-GHTEFSVYLPIRK 156
7 -37.000d4e01a2 d.122.1.4 (A:186-375) Branched-chain alpha-ketoacid dehydrogenase kinase (BCK) {Norway rat (Rattus norvegicus) [TaxId: 10116]}  ali model 3D-neighbors follow..  16  9..RLSPKKIIEKWVDFARRLCEHKAPRVRINGHVAARFPFIPMPLDYILPELLKNAMRATMESVVITIANNDVDLIIRISDRGGGIAHKDLDRVMDYHFTTAEASHGFGFGLPTSRAYAEYLGGSLQLQSLQGIGTDVYLRLRH.. 187
8 -27.900d1th8a1 d.122.1.3 (A:1-136) Anti-sigma factor spoIIab {Bacillus stearothermophilus [TaxId: 1422]}  ali model 3D-neighbors follow..  15  1.....MRNEMHLQFSARSENESFARVTVAAFVAQLDPTMDELTEIKTVVSEAVTNAIIHGNGIVSISVIIEDGVVHLTVRDEGVGIP--DIEEARQPLFTTKPELERSGMGFTIMENFM----DEVIVESEVNKGTTVYLK..... 135
9 -27.400d2hkja3 d.122.1.2 (A:10-228) Topoisomerase VI-B subunit {Sulfolobus shibatae [TaxId: 2286]}  ali model 3D-neighbors follow..  16  16.....................................FPNPARALYQTVRELIENSLDATDVNIKITIDDARQIYKVNVVDNGIGIPPQEVPNAFGRVLYSSQTRGMYGLGVKAAVLYSQMHQDKIEIETSPVNKRIYTFKLK... 136
10 -22.100d1i58a_ d.122.1.3 (A:) Histidine kinase CheA {Thermotoga maritima [TaxId: 2336]}  ali model 3D-neighbors follow..  18  3.HMVPISFVFNRFPRMVRDLAKKMNKEVNFIMRDRTFVEEIGEPLLHLLRNAIDHGIKPPIGTLILSARHEGNNVVIEVEDDGRGIDKEKIIRLFVPGFSTKEK-SGRGVGMDVVKNVVESLNGSISIESEKDKGTKVTIRLPL.. 188
11 -13.400d1s14a_ d.122.1.2 (A:) Topoisomerase IV subunit B {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  18  10............................................GQEVIDNSVDEALAGHAKRVDVILHADQS---LEVIDDGRGMPVDIHP-------EEGVPAVELILCISVVNALSKRVEVNVRRDGQ............... 86
12 -11.300d3cwva1 d.122.1.0 (A:8-206) automated matches {Myxococcus xanthus [TaxId: 246197]}  ali model 3D-neighbors follow..  27............................................VYFLLDVAYEEARRGECRDVVLEVGGDGS---IALFCTSRTVTAENLVRVATGAGFLGRPPGDGWGMLVVSLALSS.......................... 102
13 -10.900d4k4oa1 d.122.1.0 (A:18-224) automated matches {Enterococcus faecalis [TaxId: 226185]}  ali model 3D-neighbors follow..  25  25............................................VWEIVDNSIDEALAGFAKSIQVIIEPDDS---ITVIDDGRGIPVGIQAKVLHAGGKFGGGGSGHGVGSSVVNALST.......................... 113
14 -10.400d1h7sa2 d.122.1.2 (A:29-231) DNA mismatch repair protein PMS2 {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  15  5..........................................LSLSTAVKELVENSLDAGATNIDLKLKDYGVDL-IEVSDNGCGVEEENFEGLTLKHHTSKETFGFRGEALSSLCALSDVHNGKIIQKTPYPRGTTVSVQLPVRH 142
15 -10.100d1b63a2 d.122.1.2 (A:1-216) DNA mismatch repair protein MutL {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  15  21..........................................ERPASVVKELVENSLDAGATRIDIDIERGGAKL-IRIRDNGCGIKKDELALALARHATSKISLGFRGEALASISSVAYAEGRDMNVTVKPAAGTTLEVLTPARR 158
16 -9.920d1ixma_ d.123.1.1 (A:) Sporulation response regulatory protein Spo0B {Bacillus subtilis [TaxId: 1423]}  ali model 3D-neighbors follow..  10  68...............FLTFNWKTHYMTLEYEVLGEIKLSAYDQKLAKLMRKLFHLFDQAVSRTVSLQTDHPDRQLILYLDFHGAFADPSAFDDIRQNGYEDVDRFEITSHECLIEIGL............................ 179
17 -9.340d1q1da1 d.122.1.2 (A:7-245) DNA topoisomerase II {Baker`s yeast (Saccharomyces cerevisiae) [TaxId: 4932]}  ali model 3D-neighbors follow..  19  58............................................FDEILVNAADNKVRDPSMKRIDVNIHAEEH-TIEVKNDGKGIPIEIHNK--SNYDDDEKKVTGNGYGAKLCNIFSTEFILETADLNV............... 159

FFAS is supported by the NIH grant R01-GM087218-01
1 4 7 2 8 0   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Zmasek CM, Zhang Q, Ye Y, Godzik A. Surprising complexity of the ancestral apoptosis network. Genome Biol. 2007 Oct 24;8(10):R226 [Epub ahead of print]