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Query: d1ii5a1 c.94.1.1 (A:6-226) Glutamate receptor ligand binding core {Synechocystis sp., GluR0 [TaxId: 1143]}, from SCOP207

Results of FFAS03 search in SCOP207
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst LKVGVVGNPPFVFYGEGKNAAFTGISLDVWRAVAESQKWNSEYVRQNSISAGITAVAEGELDILIGPISVTPERAAIEGITFTQPYFSSGIGLLIPGTATPLFRSVGDLKNKEVAVVRDTTAVDWANFYQADVRETNNLTAAITLLQKKQVEAVMFDRPALIYYTRQNPNLNLEVTEIRVSLEPYGFVLKENSPLQKTINVEMLNLLYSRVIAEFTERWLGLast
1 -103.000d1ii5a1 c.94.1.1 (A:6-226) Glutamate receptor ligand binding core {Synechocystis sp., GluR0 [TaxId: 1143]}  ali model 3D-neighbors  100  1LKVGVVGNPPFVFYGEGKNAAFTGISLDVWRAVAESQKWNSEYVRQNSISAGITAVAEGELDILIGPISVTPERAAIEGITFTQPYFSSGIGLLIPGTATPLFRSVGDLKNKEVAVVRDTTAVDWANFYQADVRETNNLTAAITLLQKKQVEAVMFDRPALIYYTRQNPNLNLEVTEIRVSLEPYGFVLKENSPLQKTINVEMLNLLYSRVIAEFTERWLG 221
2 -93.700d2pyya_ c.94.1.0 (A:) automated matches {Nostoc punctiforme [TaxId: 63737]}  ali model 3D-neighbors follow..  29  2LLVATRVIPPFVLSNK---GELSGFSIDLWRSIATQIGIESKLIEYSSVPELISAIKDNKVNLGIAAISITAERE--QNFDFSLPIFASGLQIMVRNLESGDIRSIDDLPGKVVATTAGSTAATYLREHHISVLEVPKIEEAYKALQTKKADAVVFDAPVLLFYAANEGKGKVEIVGSILREESYGIILPNNSPYRKPINQALLNLKENGTYQSLYDKWFD 219
3 -86.300d4f3pa1 c.94.1.0 (A:26-247) automated matches {Burkholderia pseudomallei [TaxId: 320372]}  ali model 3D-neighbors follow..  24  3LVVGTDTFMPFEFKQ---GDKYVGFDLDLWAEIAKGAGWTYKIQP-MDFAGLIPALQTQNIDVALSGMTIKEERR--KAIDFSDPYYDSGLAAMVQANNT-TIKSIDDLNGKVIAAKTGTATIDWIKAHPKEIRQFPNIDQAYLALEAGRVDAAMHDTPNVLFFVNNEGKGRVKVAGAPVSGDKYGIGFPKGSPLVAKVNAELARMKADGRYAKIYKKWFG 219
4 -82.100d3vvfa1 c.94.1.0 (A:1-236) automated matches {Thermus thermophilus [TaxId: 262724]}  ali model 3D-neighbors follow..  22  14IRIGTEGFPPFNYFDE--RNQLTGFEVDLGNAIAERLGLKPRWIA-QSFDTLLIQLNQGRFDFVIASHGITEERA--RAVDFTNPHYCTGGVIVSRKGG---PRTAKDLQGKVVGVQVGTTYMEAAQKIIKEVRTYQRDPDALQDLLAGRIDTWITDRFVAKEAIKERKLENTLQVGELVFQERVAMAVAKNKSLLDALNRALAELMQDGTYARISQKWFG 230
5 -81.800d2pvua_ c.94.1.0 (A:) automated matches {Geobacillus stearothermophilus [TaxId: 1422]}  ali model 3D-neighbors follow..  24  7VVVGTDAFAPFEYMQ---KGKIVGFDVDLLDAVMKAAGLDYELKN-IGWDPLFASLQSKEVDMGISGITITDERK--QSYDFSDPYFEATQVILVKQGSP--VKNALDLKGKTIGVQNATTGQEAAEKKGPHIKKFETTVVAIMELLNGGVDAVITDNAVANEYVKNNPNKKLQVIEDPFASEYYGMIFPKNSELKAKVDEALKNVINSGKYTEIYKKWFG 225
6 -81.300d4dz1a_ c.94.1.0 (A:) automated matches {Salmonella enterica [TaxId: 28901]}  ali model 3D-neighbors follow..  17  7LNVAVSPSPPMLFKSA--DGKLQGIDLELFSSYCQSRHCKLNITE-YAWDGMLGAVASGQADVAFSGISITDKRK--KVIDFSEPYYINSFYLVSMANHKITLNNLNELNKYSIGYPRGMAYSDLIKNDLSKVKLYPTYNETMADLKNGNLDLAFIEEPVYFTFKNKKKM-PIESRYVFKNVDQLGIAFKKGSPVRDDFNLWLKE-QGPQKISGIVDSWM. 228
7 -81.200d3k4ua1 c.94.1.0 (A:2-233) automated matches {Wolinella succinogenes [TaxId: 844]}  ali model 3D-neighbors follow..  20  4LRVGLEPYLPFEMKDK--KGNVIGFDVDLAREMAKAMGVKLKLVP-TSWDGLIPGLVTEKFDIIISGMTISQERN--LRVNFVEPYIVVGQSLLVKKGLEKGVKSYKDLDKPELVTKFGVSAEYAAKRLNAKLKTYDTEAEAVQEVLNGKADMFIFDLPFNVAFMAQKGQGYLVHLDTSLTYEPLGWAIKKGDDFLNWLNHFLAQIKHDGSYDELYERWFV 225
8 -81.000d4prsa_ c.94.1.0 (A:) automated matches {Thermotoga maritima [TaxId: 243274]}  ali model 3D-neighbors follow..  24  11LLVGLSAFPPFEFVDE--NGNIVGFDVDLAKEIARRLGVELKIVD-MTFDGLIPSLLTKKIDVIISGMTITEERK--KVVAFSDPYFDAGQVIVVRKDSDFRPKTYEDLVGKTVAVQIGTTGDIEVSKDGIKVVRFDKFTDAFLELKRGRADAVVLDSATARAFVAKNPD--LVISSGVLSSEQYGIAVRKEDDLLEFINSVLRELK-KSPYDVLIEKWFS 226
9 -80.600d4kqpa_ c.94.1.0 (A:) automated matches {Lactococcus lactis [TaxId: 272623]}  ali model 3D-neighbors follow..  23  8YTIASDNFAPFEFQND--DKQFTGIDVDLLNAIAKNQGFKLKWNF-IGFQAAVDSVQSGHADGMMSGMSITDARK--QVFDYGSPYYSSNLTIATSSTDD-SIKSWKDLKGKTLGAKNGTASFDYLNAYGYTVKTFTDATTMYSSLNNGSINALMDDEPVIKYAIKQGQK--FATPIKPIPDGQYGFAVKKNPELIEMFNNGLANLRANGEYDKIIDKYLE 227
10 -80.500d4i62a_ c.94.1.0 (A:) automated matches {Streptococcus pneumoniae [TaxId: 637987]}  ali model 3D-neighbors follow..  21  10LVVALNPFAPFEYQKVDGKNQIVGSDIELAKAIATELGVELE-LSPMSFDNVLASVQSGKADLAISGVSKTDERS--KVFDFSTPYYTAKNKLIVKKSDLATYQSVNDLAQKKVGAQKGSIQETMAKDLNSSLVSLPKNGNLITDLKSGQVDAVIFEEPVAKGFVENNPDLAADLNFEKEQDDSYAVAMKKDSELKEAVDKTIQKLKESGELDKLIEDAFK 233
11 -80.400d2y7ia_ c.94.1.0 (A:) automated matches {Salmonella typhimurium [TaxId: 90371]}  ali model 3D-neighbors follow..  20  8LHFGTSAYAPYEFVDA--DNKIVGFDIDVANAVCKEMQAECSFTN-QSFDSLIPSLRFKKFDAVIAGMDMTPKRE--QQVSFSQPYYEGLSAVVVTRKGA--YHTFADLKGKKVGLENGTTHQRYLQDKAITPVAYDSYLNAFTDLKNNRLEGVFGDVAAIGKWLKNNPDYAIRASDPDYYGKGLGIAVRKNDALLQEINAALDKVKASPEYAQMQEKWF. 227
12 -80.300d4ohna_ c.94.1.0 (A:) automated matches {Streptococcus pneumoniae [TaxId: 637987]}  ali model 3D-neighbors follow..  17  15ITIGFDSFVPMGFAQK--DGSYAGFDIDLATAVFEKYGITVNWQP-IDWDLKEAELTKGTIDLIWNGYSATDERR--EKVAFSNSYMKNEQVLVTKKSSG--ITTAKDMTGKTLGAQAGSSGYADFEANNKEANQYQTFNEALIDLKNDRIDGLLIDRVYANYYLEAEGVLNYNVFTVGLETEAFAVGSRKDTTLVKKINEAFSSLYKDGKFQEISQKWFG 240
13 -80.200d2ylna_ c.94.1.0 (A:) automated matches {Neisseria gonorrhoeae [TaxId: 485]}  ali model 3D-neighbors follow..  21  16VTVGTEGYAPFTYHDK--DGKLTGYDVEVTRAVAEKLGVKVEFKE-TQWDSMMAGLKAGRFDVVANQVGLTSPERQ-ATFDKSEPYSWSGAVLVAHNDSN--IKSIADIKGVKTAQSLTSNYGEKAKAAGAQLVPVDGLAQSLTLIEQKRADATLNDELAVLDYLKKNPNAGVKIVWSAPADEKVGSGLKGNDEAVAKFSTAINELKADGTLKKLGEQFFG 234
14 -79.800d2ieea_ c.94.1.0 (A:) automated matches {Bacillus subtilis [TaxId: 1423]}  ali model 3D-neighbors follow..  19  12IVVATSGLYPTSYHDDSGSDKLTGYEVEVVREAAKRLGLKVEFKE-MGIDGMLTAVNSGQVDAAANDIDVTKDRE--EKFAFSTPYKYSYGTAIVRKDDLSGIKTLKDLKGKKAAGAATTVYMEVARKYKEVIYDNATNEQYLKDVANGRTDVILNDYYLQTLALAAFPDLNITIHPDKYMPNKQALVMKKNAALQKKMNEALKEMSKDGSLTKLSKQFFN 235
15 -79.700d3i6va_ c.94.1.0 (A:) automated matches {Silicibacter pomeroyi [TaxId: 89184]}  ali model 3D-neighbors follow..  20  2VRMGTEGYPPYNFIND--AGEVDGFERELGDELCKRAGLTCEWVK-NDWDSIIPNLVSGNYDTIIAGMSITDERD--EVIDFTQNYIPPTASSYVATSDG------ADLSGI-VAAQTATIQAGYIAESGATLVEFATPEETIAAVRNGEADAVFADRDYLVPIVAESGGELMFVGDDVPLGGGVGMGLREDGELRGKFDAAITSMKEDGTLNTMIKKWFG 212
16 -79.400d3kzga_ c.94.1.0 (A:) automated matches {Legionella pneumophila [TaxId: 272624]}  ali model 3D-neighbors follow..  18  4LTIGTSKNPPFEVWSG-NNSSLYGFDIDLMQEICRRLHATCTFEA-YIFDDLFPALKNREVDLVIASMIITDERK--KHFIFSLPYMESNSQYITTVDSK--ISTFDDLHGKKIGVRKGTPYARQVLSENNQVIFYELIQDMLLGLSNNQVDASLMDYEAAKYWMASEPYAY-LIGKKISIGEGYSIMANPQFVLIKKINKILLEMEADGTYLRLYSEYF. 228
17 -79.000d3delb1 c.94.1.0 (B:34-257) automated matches {Chlamydia trachomatis [TaxId: 813]}  ali model 3D-neighbors follow..  17  3FIVGTNAYPPFEFVDK--RGEVVGFDIDLAREISNKLGKTLD-VREFSFDALILNLKQHRIDAVITGMSITPSRL--KEILMIPYYGEEIKHLVLVFKGE-NKHPLPLTQYRSVAVQTGTYQEAYLQSSEVHIRSFDSTLEVLMEVMHGKSPVAVLEPSIAQVVLKDFPALSTATIPEDQWVLGYGIGVASDRALALKIEAAVQEIRKEGVLAELEQKWGL 222
18 -78.100d1lsta_ c.94.1.1 (A:) Lysine-,arginine-,ornithine-binding (LAO) protein {Salmonella typhimurium [TaxId: 90371]}  ali model 3D-neighbors follow..  17  6VRIGTDTYAPFSSKDA--KGEFIGFDIDLGNEMCKRMQVKCTWVA-SDFDALIPSLKAKKIDAIISSLSITDKRQ--QEIAFSDKLYAADSRLIAAKGSP-IQPTLESLKGKHVGVLQGSTQEAYANDNGVDVVAYANQDLIYSDLTAGRLDAALQDEVAASEGFLKQPAGK-SVKDKKYFGDGTGVGLRKDTELKAAFDKALTELRQDGTYDKMAKKYFD 232
19 -76.700d4powa_ c.94.1.0 (A:) automated matches {Agrobacterium tumefaciens [TaxId: 176299]}  ali model 3D-neighbors follow..  13  4ITIATEGYAPYNFKDA--GGKLIGFDIDLGNDLCKRMNIECKFVE-QAWDGIIPSLTAGRYDAIMAAMGIQPARE--KVIAFSRPYLLTPMTFLTTADSPELDKFTKIFEGVKFGVQAGTSHEAFMKQMSVQISTYDTIDNVVMDLKAGRIDASLASVSFLKPLTDKPDNKDLKMFGPRMTGKGVGVGIRKDADLKALFDKAIDAAIADGTVQKLSQQWFG 249
20 -76.700d3h7ma_ c.94.1.0 (A:) automated matches {Geobacter sulfurreducens [TaxId: 35554]}  ali model 3D-neighbors follow..  22  7IVVGGDDYPPYEFIDQ--NGKPAGYNVELTRAIAEVMGMTVEF-RLGAWSEMFSALKSGRVD-VLQGISWSEKRA--RQIDFTPPHTIVYHAIFARRDSPP-AAGLEDLRGRKVALHRDGIMHEYLAERGKDLVLTPTPADALRLLAAGGCDYAVVAMVPGMYIIRENRLTNLVPVARSIAAQRYGYAVRQDAELLARFSEGLAILRKTGQYEAIRAKWLG 224
21 -76.500d4io2a1 c.94.1.0 (A:3-248) automated matches {Adineta vaga [TaxId: 104782]}  ali model 3D-neighbors follow..  18  8LRIGVIEVPFTIVANGRNTTKLTGYVLDLIEYLRDKMGFVADV-PNTSYTGLVLALANGDYDIAIGDITVTSARR--EIVAFSNSISDNSMRILMRKGTL--IDGMDDLKYNRIGIRIGTAGEDYYLRESRNFYPLKSRQEMYDSLLAGIIDVSFMDIGTAEYVTNNIYC-NLTLVGEDFDKSTFGIVTPKEWLYAKDLDVNILSLRETGILDNLKKKWFQ 241
22 -76.300d5loma_ c.94.1.0 (A:) automated matches {Agrobacterium fabrum [TaxId: 176299]}  ali model 3D-neighbors follow..  23  12ISVGTMGAKPYAFTTA--DGNFTGFDIELFLNVAGRLGFKKEQVVGQEFSALMPSVANGRFDVAAAAIGTTAKRK--ETVDFSDGYLAGFLSVLTSEAG---ITDAAGLKGKRLGVVQGTLQEIYAEKNGTDLVKFPDNNSAVSALNNGTVDAHFLDFEAAKDYSARYPALKI-AVNIPSFDAPAGFVIRKNDALRNALDKGLKEAMQDGTWKKLHEKWFP 230
23 -74.900d3kbra_ c.94.1.0 (A:) automated matches {Pseudomonas aeruginosa [TaxId: 287]}  ali model 3D-neighbors follow..  17  13LRVATTGYKPFSYRTE--EGGYAGFDVDMAQRLAESLGAKLVVVP-TSWPNLMRDFADDRFDIAMSGISINLERQ--RQAYFSIPYLRDGKTPITLCSEEARFQTLEQIDGVTAIVNPGGTNEKFARANKARILVHPDNVTIFQQIVDGKADLMMTDAIEARLQSRLHPELCAVHPQQPFDFAEKAYLLPRDEAFKRYVDQWLHIAEQSGLLRQRMEHWL. 232
24 -73.900d4gvoa_ c.94.1.0 (A:) automated matches {Listeria monocytogenes [TaxId: 169963]}  ali model 3D-neighbors follow..  15  4ITVGTGTFPNVCFLDE--NGKLTGYDVELVKEIDKRLPGYKFKFKTMDFSNLLVSLGAGKVDIVAHQMEKSKERE--KKFLFNDVAYNNFPLQLTVLDSNNSINSTKDLAGKRVITSATSNGALVLKKINEEAYEGQGSNDTANQLKTGRADATISTPFAVDFQNKTSA-IKEKVVGDVLSNAKVYFMLGKDEKLSKKVDEALQSIIDDGTLKKLSEKWLG 228
25 -72.400d5eyfa_ c.94.1.0 (A:) automated matches {Enterococcus faecium [TaxId: 333849]}  ali model 3D-neighbors follow..  21  13IIWGVKDTRLFGMMDI-ESRTVQGFDVDIAKAITKKILGDNGKTEEVTSKTRIPLLKNGNIDAIIATMTITDERK--KQVDFSDVYFDAGQALLVKKGSQ--IKSVDDLNASTVLAVKGSTSAANIRQHDAKILELENYAEAFTALQSGQGDAMTTDNAILLGIADENPE--YELVGGTFTNEPYGIAINKGQNFLKAVNQALEEMHADGTYDKIYQKWFP 233
26 -72.400d2q88a1 c.94.1.0 (A:1-256) automated matches {Rhizobium meliloti (Sinorhizobium meliloti) [TaxId: 382]}  ali model 3D-neighbors follow..  16  14ARIAIANEPPFTAVGA--DGKVSGAAPDVAREIFKRLGVADVVASISEYGAMIPGLQAGRHDAITAGLFMKPERC--AAVAYSQPILCDAEAFALKKGNPLGLKSYKDIPDAKIGAPGGGTEEKLALEPRDRVIVVPDGQSGLKMLQDGRIDVYSLPVLSINDLVSKANDPNVEVLAPVEGAPVYGAAFRKDEALRDAFDVELAKLKESGEFAKIIEPYGF 239
27 -71.900d4c0ra1 c.94.1.0 (A:3-239) automated matches {Streptococcus mutans [TaxId: 1309]}  ali model 3D-neighbors follow..  18  3VTLATVGTNPFSYEK---KGKLTGYDIEVAKEVFKASDKYDVKYQKTEWTSIFSGLDSDKYQIGANNISYTKERA--NKYLYSNPTASNPLVLVVPKDSD--IKSYNDIAGHSTQVVQGNTTVPMLQKFNKNNFTSEDLAHQIRNVSDGKYDFKIFEKISAETIIKEQGLDNLKVIDLPSDQKPVYFIFAQDQDLQKFVNKRLKKLYENGTLEKLSKKYLG 227
28 -70.300d5wjpa1 c.94.1.0 (A:13-248) automated matches {Pelagibacter ubique [TaxId: 335992]}  ali model 3D-neighbors follow..  16  13LKVGTTGWDPMAMKDP-ATNKYKGFDIDVMQELAKDMGVKITFVP-TEWKTIVSGITAGRYDISTS-VTKTPKRA--EVAGFTDSYYKYGTVPLVLKKNLKKYSTWKSLNNKTIATTLGTSQEEKAKEFLSKLQSVESPARDFQEVLAGRADGNITSSTEANKLVVKYPQLAI-VPDGEKNPAFLAMMVSKNDVWNDYVNEWIKSKKSSGFFNKLLAKYNL 233
29 -69.600d1xt8a1 c.94.1.1 (A:10-257) Putative amino-acid transporter CjaA {Campylobacter jejuni [TaxId: 197]}  ali model 3D-neighbors follow..  19  13VRIGVFDKPPFGYVDE--KGNNQGYDIALAKRIAKELENKVQFVL-VEAANRVEFLKSNKVDIILANFTQTPQRA--EQVDFCSPYMKVALGVAVPKDSN--ITSVEDLKDKTLLLNKGTTADAYFTQNNIKTLKYDQNTETFAALMDKRGDALSHDNTLLFAWVKDHPD-FKMGIKELGNKDVIAPAVKKGDELKEFIDNLIIKLGQEQFFHKAYDETLK 232
30 -67.000d2v25a_ c.94.1.0 (A:) automated matches {Campylobacter jejuni [TaxId: 197]}  ali model 3D-neighbors follow..  20  12LIVGVKDVPHYALLDQ-ATGEIKGFEVDVAKLLAKSILGDDKKIKAVNAKTRGPLLDNGSVDAVIATFTITPERK--RIYNFSEPYYQDAIGLLVLKEKK--YKSLADMKGANIGVAQAATTKKAIGEADVKFSEFPDYPSIKAALDAKRVDAFSVDKSILLGYVDDKS----EILPDSFEPQSYGIVTKKDDAFAKYVDDFVKEH--KNEIDALAKKWG. 230
31 -60.900d4kcda_ c.94.1.0 (A:) automated matches {Norway rat (Rattus norvegicus) [TaxId: 10116]}  ali model 3D-neighbors follow..  17  55.....NDTVPIKFKK-----CCYGYCIDLLEQLAEDMNFDFDLWKNGHWTGLVGDLLSGTANMAVTSFSINTARS--QVIDFTSPFFSTSLGILVRTRGTHDPKLHHPSQGFRFGTVRESSAEDYVRQSYMRRYNVPATPDGVQYLKNDKLDAFIMDKALLDYEVSIDADCKLLTVGKPFAIEGYGIGLPPNSPLTSNISELISQYKSHGFMDVLHDKWYK 286
32 -53.200d4jwxa_ c.94.1.0 (A:) automated matches {Norway rat (Rattus norvegicus) [TaxId: 10116]}  ali model 3D-neighbors follow..  16  3LSIVTLEEAPFVIVEDNVKKCCKGFCIDILKKLSRTVKFTYDLYVNNVWNGMIGEVVYQRAVMAVGSLTINEERSEV--VDFSVPFVETGISVMVSRGTQVT-RPHDYSPPFRFGTVPNGSTERNIRNNYPYMFNQRGVEDALVSLKTGKLDAFIYDAAVLNYKAGRDEGCKLVTIGSGFATTGYGIALQKGSPWKRQIDLALLQFVGDGEMEELETLWLT 275
33 -49.100d3mpka_ c.94.1.0 (A:) automated matches {Bordetella pertussis [TaxId: 257313]}  ali model 3D-neighbors follow..  20  18VKVAVLNFAPFTLFRT--DEQFGGISAAVLQLLQLRTGLDFEIIGVDTVEELIAKLRSGEADM-AGALFVNSARE--SFLSFSRPYVRNGMVIVTRQDPD-APVDADHLDGRTVALVRNSAAIPLLQRRQAKVVTADNPSEAMLMVANGQADAVVQTQISASYYVNRYFAGKLRIASADLPPAEIALATTRGQTLMSILNKALYSISND-ELASIISRW.. 234
34 -43.900d4ykia_ c.94.1.0 (A:) automated matches {Mnemiopsis leidyi [TaxId: 27923]}  ali model 3D-neighbors follow..  19  6LRLGSVEEQPFMFFATEGNDCWSGMVNDMVVKLSEDLGFTYEYITTNEWNGMIRDLLDDKTDMIAIDLSTNSARKSA--IDYSFPFMDAGIKAVVKGEGTTQVLELLDQDKYKWGVIGSRHPETLLKTHRDSRVELKDLNHAIETLRGGL-FVFIDEGPVLAHNLIS--DCDVFSVGEEFQSFEYAFGLPKDSPYKSLIDSHLLKFREEGFIDILWEKWS. 245
35 -42.800d1pb7a_ c.94.1.1 (A:) N-methyl-D-aspartate receptor subunit 1 {Norway rat (Rattus norvegicus) [TaxId: 10116]}  ali model 3D-neighbors follow..  17  3LKIVTIHQEPFVYVKPTVPQCCYGFCIDLLIKLARTMNFTYEVHLVADWNGMMGELLSGQADMIVAPLTINNERAQY--IEFSKPFKYQGLTILVKKGTRITGINDPRLRNPSDKFIYATVKQSSVDIYFRRQVELESAAEAIQAVRDNKLHAFIWDSAVLEFEASQK---DLVTTGELFFRSGFGIGMRKDSPWKQNVSLSILKSHENGFMEDLDKTWVR 283
36 -40.700d2v3ua_ c.94.1.0 (A:) automated matches {Norway rat (Rattus norvegicus) [TaxId: 10116]}  ali model 3D-neighbors follow..  20  5LRVVTVLEEPFVMVSENKPKKYQGFSIDVLDALSNYLGFNYEI-EDGTWNGLVGELVFKRADIGISALTITPDRENV--VDFTTRYMDYSVGVLLRRGTSIQSLQDLSKQTDIPYGTVLDSAVRMINRSNGSENNVLESQAGIQKVKYGN--AFVWDAAVLEYVAINDPDCSFYTVGNTVADRGYGIALQHGSPYRDVFSQRILELQQSGDMDILKHKWW. 257
37 -39.100d4wxja1 c.94.1.0 (A:9-263) automated matches {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}  ali model 3D-neighbors follow..  18  3YTVATRVGKPYFSWREEPEGRFEGYAVDLIYMLAQECKFDFNFEPVRDWDGIIRQLIDNNAQIGICDLTITQARRSV--VDFTVPFMQLGISILSYKGTGSLHDLVDQNKVQFGTIRGGATSVYFSLSFKPDAFTKNNEEGVDRVKLSKGTYAFLMETTNLQYYVQRN---ELTQIGESFGEKHYGIAVPLNADFRSNLSVGILRLSERGELFKLRNKWFN 254
38 -37.900d5ng9a1 c.94.1.1 (A:3-263) automated matches {Norway rat (Rattus norvegicus) [TaxId: 10116]}  ali model 3D-neighbors follow..  15  4VVVTTILESPYVMMKKNGNERYEGYCVDLAAEIAKHCGFKYKLTDTKIWNGMVGELVYGKADIAIAPLTITLVREEV--IDFSKPFMSLGISIMIKKGTPIESAEDLSKQTEAYGTLDSGSTKEFFRRSKIAVFDVRTTAEGVARVRKSKGKYAYLLESTMNEYIEQRKPCDTMKVGGNLDSKGYGIATPKGSSLGNAVNLAVLKLNEQGLLDKLKNKWW. 253
39 -21.300d2ozza1 c.94.1.1 (A:1-228) Hypothetical protein YhfZ {Shigella flexneri [TaxId: 623]}  ali model 3D-neighbors follow..  9  33..............................GLKAQFDGIPFYYAHMRGADIRVECLLNGVYDMAVVSESYLSQNNLCIALELGPHTYVGEHQLICRKG--------ESGNVKRVGLDSRSADQKIMTDVFFGDSDVESYHESLQRIVKGDVDAVIWNVVAENELTMLGLEATPLTDDPRFLQATEAVVLTRVDD--YPMQQLLRAVVDKHALLAHQQR... 218
40 -11.900d4p56a_ c.94.1.0 (A:) automated matches {Bordetella bronchiseptica [TaxId: 257310]}  ali model 3D-neighbors follow..  11  1VELTLSSWLP---THAVVADFLMPWGEEIRKATDGRVTLRLLPKAVTNPAGHFDAVRDGLVDVTFVSHAYYPGRFQLTKF-AVLPFSGDTATSRSIATTSKPVKQIGDFQGLKIRVG-GGMAADVAKAVGASPIAKP-APESYELLSTGVADGVFFPAESLVSFKLDSIIRHATEFPGGLYSDTHAVIINRDARLSKQDQDTLVRLSGRHLAELAGRAW.. 248
41 -11.100d4ddda_ c.94.1.0 (A:) automated matches {Ehrlichia chaffeensis [TaxId: 205920]}  ali model 3D-neighbors follow..  8  10.................GTGSMTGVYYPIGGSICRFIKIICSISSTTGSVYNLNSIRYSNMDISIVQSDLEEKMLPMDNLRMLASLHKEYLTIVVKKSSN--ISVIDDIKGKRVNIGSPGTGVRVAMLKLLGEKGWTKSSEQAQALCDNKIDVMV--------DVIGHPNASIQEASATCDIKFIPLDDRLIDDLHAKYPYYQKDIISGGLYND....... 224
42 -11.100d1us5a_ c.94.1.1 (A:) Putative GluR0 ligand binding core {Thermus thermophilus [TaxId: 274]}  ali model 3D-neighbors follow..  14  8.................GSGSTTGVYFPVATGIAKLVGIRANARSTGGSVANINAINAGEFEMALAQNDIAFEGKPVKTIRALAALYPEVVHVVARKDAG--IRTVADLKGKRVVVGDVGSGTEQNARQILEAYGLTSASQGIQLMQDKRADALF--------YTVGLGASAIQQLALTTPIALVAVDLNRIQAIAKKYPFYVGFNIPGGTYKGVDVT... 224
43 -10.400d2i49a_ c.94.1.1 (A:) Bicarbonate transporter CmpA {Synechocystis sp. [TaxId: 1143]}  ali model 3D-neighbors follow..  11  7IKLGIVEAAPLIIAQEKGFFAKYGMT-------------GVEVSKQANWASARDNVTIGSQGGGIDGGQWQITNGNKVPMYVLAQLITQGNGIAVAPMAADYIKGFNKTNGRKFKAAHNVNQDFWIRDTDIDLLAVPP-AETVQGMRNGTMDAFSTGDPWPYRIVTENIGYMAGLTAQIWPYHPEEYLVDKNPKATKALLKGIMEAQQ............. 245
44 -10.100d5i7ia_ c.94.1.0 (A:) automated matches {Uncultured marine [TaxId: 56765]}  ali model 3D-neighbors follow..  10  16..SNAKFVKPWSEKVLAESNGEIKVEIYPAMQLGGKP------------PQLVDQVRDGVVDIVWTVAGYTPGRFPHLEA-FELPFMPASAEATSQATKEKVIKSAADLNGMKMRGP-TRVITKMLEGLGATPVGMP-VPAVAGALSKGVIDGMVVPWEIMPSFKLHELTKAHTTVSGSRGLYTTPFLFLMNKAKYESLSDEHKKVIDNNAGLALAKL... 246
45 -9.380d4nx1b_ c.94.1.0 (B:) automated matches {Sulfitobacter sp. [TaxId: 314267]}  ali model 3D-neighbors follow..  11  24...........ELVDEKYDGDVLGVESDYVTFLNQGVAIDYTILAPSNMAKFAPSIPLMDMPFLFRDEDELLEKADIKIVG----YTGGGTRNLL---SKQPVVTFDDLKGHKMRVMGAPIQAQIFQALTAAPSAIA-YNEVYNAIQTGVIAGFENEAASIQNLKFYEVAPNLTLTRHSITVRPIVMSGKTFNSLPADLQAVVLEAGEEAG.......... 240
46 -9.210d4n6da1 c.94.1.0 (A:28-339) automated matches {Desulfovibrio salexigens [TaxId: 526222]}  ali model 3D-neighbors follow..  13  25.............................KQEVEKRTAGKVQV-TLLGAKNTLRGVMQGQADIGCVSLAYHPGVFPLSSV-FELPLGFTSSTSASLA-TKVPVRNLDDLKGLEV--RASGILSKILESLGATPVSMP-MSATPEALQKGVVKGLFSSFEVLKDLNFAEICRYETETNTAVYPFAIIMNMNSWNSLPDDVKKVLNDLGRE............ 234
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Bourne PE, Allerston CK, Krebs W, Li W, Shindyalov IN, Godzik A.,Friedberg I, Liu T, Wild D, Hwang S, Ghahramani Z, Chen L, Westbrook J. The status of structural genomics defined through the analysis of current targets and structures. Pac Symp Biocomput. 2004;:375-86.