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Query: d1ijba_ c.62.1.1 (A:) von Willebrand factor A1 domain, vWA1 {Human (Homo sapiens) [TaxId: 9606]}, from SCOP207

Results of FFAS03 search in SCOP207
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst SEPPLHDFYCSRLLDLVFLLDGSSRLSEAEFEVLKAFVVDMMERLRVSQKWVRVAVVEYHDGSHAYIGLKDRKRPSELRRIASQVKYAGSQVASTSEVLKYTLFQIFSKIDRPEASRIALLLMASQEPQRMSRNFVRYVQGLKKKKVIVIPVGIGPHANLKQIRLIEKQAPENKAFVLSSVDELEQQRDEIVSYLCDLAPEALast
1 -87.000d1ijba_ c.62.1.1 (A:) von Willebrand factor A1 domain, vWA1 {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors  100  1SEPPLHDFYCSRLLDLVFLLDGSSRLSEAEFEVLKAFVVDMMERLRVSQKWVRVAVVEYHDGSHAYIGLKDRKRPSELRRIASQVKYAGSQVASTSEVLKYTLFQIFSKIDRPEASRIALLLMASQEPQRMSRNFVRYVQGLKKKKVIVIPVGIGPHANLKQIRLIEKQAPENKAFVLSSVDELEQQRDEIVSYLCDLAPEA 202
2 -70.900d1atza_ c.62.1.1 (A:) von Willebrand factor A3 domain, vWA3 {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  18  1...........QPLDVILLLDGSSSFPASYFDEMKSFAKAFISKANIGPRLTQVSVLQYGSITTIDVPWNVVPEKAHLLSLVDVMQREGGP-SQIGDALGFAVRYLTSEGARPGASKAVVILVTDVS----VDSVDAAADAARSNRVTVFPIGIGDRYDAAQLRILAGPAGDSNVVKLQRIEDLPTMV-TLGNSFLHKL... 184
3 -70.100d3zqka_ c.62.1.0 (A:) automated matches {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  21  1..........SMVLDVAFVLEGSDKIGEADFNRSKEFMEEVIQRMDVGQDSIHVTVLQYSYMVTVEYPFSEAQSKGDILQRLREIRYQGGNRTNTGLALRYLSDHSFLQGDREQAPNLVYMVTGNPASDEIKR---------LPGDIQVVPIGVGPNANVQELERIGWPN---APILIQDFETLPREAPDLVLQRCCSGE.. 180
4 -68.700d5hgja_ c.62.1.1 (A:) Integrin alpha1-beta1 {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  17  1............QLDIVIVLDGSNSIY--PWDSVTAFLNDLLERMDIGPKQTQVGIVQYGENVTHEFNLNKYSSTEEVLVAAKKIVQRGGRQTMTALGIDTARKEAFTRGARRGVKKVMVIVTDGESHDNH--RLKKVIQDCEDENIQRFSIAILGSYNVEEIKSIASEPTEKHFFNVSDELALVTIVKTLGERIFAL.... 193
5 -67.200d4igia_ c.62.1.0 (A:) automated matches {Mouse (Mus musculus) [TaxId: 10090]}  ali model 3D-neighbors follow..  23  1............EKDVVFLIDGSEGVRS-GFPLLKDFVQRVVESLDVGPDRVRVALVQYSDRTRPEFYLNSHMDQQGVISAIRRLTLLGGPTPNTGAALEFVLRNILTSSTAEGVPQLLIVLTAEPS----GDDVRGPSVVLKQGGAVPIGIGIG-NADISEMQTISFIP--DFAVAIPTFRELGTIQQVISERVIQLNREE 186
6 -66.700d1mf7a1 c.62.1.1 (A:128-319) Integrin alpha M (CR3, CD11b/CD18, Mac-1 alpha subunit) {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  14  1........CPQEDSDIAFLIDGSGSIIPHDFRRMKEFVSTVME--QLKKSKTLFSLMQYSEEFRIHFTFKEFQNNPNPRSLVKPITQLLGR-THTATGIRKVVRELFNNGARKNAFKILVVITDGEKFGDPL-GYEDVIPEADREGVIRYVIGVGDAFSRQELNTIASKPPRDHVFQVNNFEALKTIQNQLREKIFC..... 191
7 -63.600d1mjna_ c.62.1.1 (A:) Integrin CD11a/CD18 (Leukocyte function associated antigen-1, LFA-1) {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  19  2............NVDLVFLFDGSMSLQPDEFQKILDFMKDVMK--KCSNTSYQFAAVQFSTSYKTEFDFSDYVKRKDPDALLKHVKHMLLL-TNTFGAINYVATEVFREGARPDATKVLIIITDGEATDS--------GNIDAAKDIIRYIIGIGKHFSQETLHKFASKPASEFVKILDTFEKLKDLCTELQKKI....... 179
8 -62.900d1q0pa_ c.62.1.1 (A:) Complement factor B domain {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  14  1............SMNIYLVLDGSDSIGASNFTGAKKSLVNLIEKVASYGVKPRYGLVTYATYPKIWVKVSEASNADWVTKQLNEINYEDKSGTNTKKALQAVYSMMSWPEGWNRTRHVIILMTDGLHNMRDLLYIGKDRKNPREDYLDVYVFGVGPLVNQVNINALASKKNEQHVFKVKDMENLEDVFYQMIDESQSLS... 209
9 -61.500d2odpa1 c.62.1.0 (A:224-442) automated matches {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  16  3......QIQRSGHLNLYLLLDASQSVSENDFLIFKESASLMVDRIFSFEINVSVAIITFASEPKVLMSVLNDNSRDEVISSLENANYKDGTGTNTYAALNSVYLMMNETMAWQEIRHAIILLTDGKSNMGGSPREILNINQKRNDYLDIYAIGVGKDVDWRELNELGSKKDERHAFILQDTKALHQVFEHMLDVSKLTDT.. 218
10 -57.300d1shux_ c.62.1.1 (X:) Capillary morphogenesis protein 2 domain {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  17  1........SCRRAFDLYFVLDKSGSVAN-NWIEIYNFVQQLAERFVSP--EMRLSFIVFSSQATIILPLTGDRGKISKGLEDLKRVSPVGE-TYIHEGLKLANEQIQK-AGGLKTSSIIIALTDGKLDGLVPSYAEKEAKISRSLGASVYCVGVL-DFEQAQLERIADSK--EQVFPVGGFQALKGIINSILAQSC...... 181
11 -24.500d2x5na_ c.62.1.1 (A:) Proteasome regulatory subunit Rpn10 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}  ali model 3D-neighbors follow..  13  4..............ATMILIDNSEWMINGDYEAQKDTVHMIFNQKINDNPENMCGLMTIGDNSPQVL-STLTRDYGKFLSAMHDLP---RGNAKFGDGIQIAQLALKHRENKIQRQRIVAFV--GSPIVEDEKNLIRLAKRMKKNNVAIDIIHIGELQNESALQHFIDAANSSDSCHLVSIPPSPQLLSDLVNQ........ 183
12 -21.900d1txvb6 c.62.1.1 (B:107-354) Integrin beta A domain {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  3..........DYPVDIYYLMDLSYSMK-DDLWSIQNLGTKLATQMRKLTSNLRIGFGAFVDKPVSPYVLTLTDQVTRFNEEVKKQSVSRNRDAPEGDAIMQATVCDEKIGWRNDASHLLVFTTDAASTTMDYPSLGLMTEKLSQKNINLIFANYSELIPGTTVGVLSMDSSNVLQLIVDAYGKIRS................ 247
13 -19.600d1jeyb2 c.62.1.4 (B:6-241) Ku80 subunit N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  13  5...............VVLCMDVGFTMIESPFEQAKKVITMFVQRQVFAENKDEIALVLFGTDQNITVHRHLMLPDFDLLEDIESKIQPGSQQADFLDALIVSMDVIQHETIGKKFEKRHIEIFTDLSSRFSKSQLDIIIHSLKKCDISLQFFLPF............................................... 162
14 -18.600d1jeya2 c.62.1.3 (A:34-253) Ku70 subunit N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  16  5...............LIFLVDASKAMELTPFDMSIQCIQSVYISKIISSDRDLLAVVFYGTEKDQELDNPGAKRILELDQFKGQ-MMGHGSDYSLSEVL-WVCANLFSDVQFKMSHKRIMLFTNEDNPSAKASRARTKAGDLRDTGIFLDLMHLKKPGGFDI-DIISIAEDEDLRVHFEESSKLEDLLRKVRAK........ 216
15 -13.000d1yvra2 c.62.1.5 (A:364-537) 60-kda SS-A/Ro ribonucleoprotein, RoRNP {African clawed frog (Xenopus laevis) [TaxId: 8355]}  ali model 3D-neighbors follow..  7..............RFLLAIDVSASMNQRV-SILNASVVAAAMCMLVARTEKDSHMVAFSDEMLPC----PITVNMLLHEVVEKMSDITMGSTDCALPMLWAQK-------TNTAADIFIVFTDCETNVEDVHTALKQYREKMGIPAKLIVCAMTSNGFS------IADPDDRGMLDICGFDSALDVIRNFTLDL....... 174
16 -9.240d1pd0a3 c.62.1.2 (A:301-552) Sec24 {Baker`s yeast (Saccharomyces cerevisiae) [TaxId: 4932]}  ali model 3D-neighbors follow..  1..........PPPATYCFLIDVSSSIKSGLLATTINTLLQNLDSIPNHDERTRISILCVDNAIHYSMVVSLKACRQNIETLLTKIPQIFQSNLITNFALGPALKSAYHLIGGVG-GKIIVVSGTLPN-SCQDSFYKNFTIDCSKVQITVLFLASEDYMDVASLSNLSRFTAGQTHFSGKNPNDIVKFSTEFAKHI....... 248

FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 3 3 7   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Plewczynski D, Tkacz A, Wyrwicz LS, Godzik A, Kloczkowski A, Rychlewski L. Support-vector-machine classification of linear functional motifs in proteins. J Mol Model 2006 Aug;12(4):453-61. Epub 2005 Dec 10.