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Query: d1ipaa1 c.116.1.1 (A:106-263) RrmA (RrmH), C-terminal domain {Thermus thermophilus [TaxId: 274]}, from SCOP207

Results of FFAS03 search in SCOP207
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst TLEEYRPSPDALILVAVGLEKPGNLGAVLRSADAAGAEAVLVAGGVDLYSPQVIRNSTGVVFSLRTLAASESEVLDWIKQHNLPLVATTPHAEALYWEANLRPPVAIAVGPEHEGLRAAWLEAAQTQVRIPMQGQADSLNVSVSAALLLYEALRQRLLLast
1 -89.700d1ipaa1 c.116.1.1 (A:106-263) RrmA (RrmH), C-terminal domain {Thermus thermophilus [TaxId: 274]}  ali model 3D-neighbors  100  1TLEEYRPSPDALILVAVGLEKPGNLGAVLRSADAAGAEAVLVAGGVDLYSPQVIRNSTGVVFSLRTLAASESEVLDWIKQHNLPLVATTPHAEALYWEANLRPPVAIAVGPEHEGLRAAWLEAAQTQVRIPMQGQADSLNVSVSAALLLYEALRQRLL 158
2 -71.300d1gz0a1 c.116.1.1 (A:78-243) RlmB, C-terminal domain {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  30  12....IASLDQPFLLILDGVTDPHNLGACLRSADAAGVHAVIVPKDRSALNATAKKVACGAAESVPLIRVNLARTMRMLQEENIWIVGTAGEADHTLYQSKMTGRLALVMGAEGEGMRRLTREHCDELISIPMAGSVSSLNVSVATGICLFEAVRQRS. 166
3 -64.500d1v2xa_ c.116.1.1 (A:) tRNA (Gm18) methyltransferase TrmH {Thermus thermophilus [TaxId: 274]}  ali model 3D-neighbors follow..  30  14..EVLRRRQPDLTVLLENVHKPHNLSAILRTCDAVGVLEAHAVNPTGGV-PTFNETSGGSHKWVYLRVHDLHEAFRFLKERGFTVYATALREDADFREVDYTKPTAVLFGAEKWGVSEEALALADGAIKIPMLGMVQSLNVSVAAAVILFEAQRQRL. 169
4 -58.800d4pzka_ c.116.1.0 (A:) automated matches {Bacillus anthracis [TaxId: 261594]}  ali model 3D-neighbors follow..  25  1..........GVHVVLYQPEIPANTGNIARTCAATGTELHLIRPGFSTDDKMLKRAGLDYWQHVKITYDSIEEFYEKNKDGEFFYLTKYGEKATAFDYSKREKDYYFVFGRETNGLPANVIEEFDHCLRIPMTDKVRSLNLSNTAAILIYEAFRQQNY 152
5 -9.210d1v6za2 c.116.1.5 (A:67-228) Hypothetical protein TTHA0657 (TT1575) {Thermus thermophilus [TaxId: 274]}  ali model 3D-neighbors follow..  21  7............VVLYVALLKGDKLAEVVRAATELGATRIQ-GEGKLRRLRAVALEAAKQSGRVVVPEVLPPIPLKAVPQVAQGLVAHVGATARVREVLDPEKPLALAVGPEG-GFAEEEVALLEARGFTPVSLGRRILRAETAALALL......... 153
6 -8.780d2qwva1 c.116.1.7 (A:5-205) Uncharacterized protein VCA1059 {Vibrio cholerae [TaxId: 666]}  ali model 3D-neighbors follow..  10  27HTEILAHCMMNSLFTAQSHREDVVIHLVLESTRDYSRTITVEANEISDVGGFHEAALIALLVKLTVRTISFEALLGELAEHHSLYM----KKGDSIRDIKIGPNPCFILTDHI-PMPKKSGNSMKRLGVEKISLGPKMLFASQCVTLIHNEIDHQE.. 198
7 -7.280d3bbda1 c.116.1.6 (A:2-205) Ribosome biogenesis protein NEP1 {Methanococcus jannaschii [TaxId: 2190]}  ali model 3D-neighbors follow..  11  61...........LLNILDSINHEKKLNIYIHTYD-----DKVLKINPETRLPRNYFRFLGVMEKVHLIKMEEKTLEDLLNEINAKKIAIMTKTGKLTHPKLLKEYDTFIIGGFPYGLKINKEKVFGDIKEISIYNKGLMAWTVCGIICYSLSF...... 204
8 -7.210d1vhka2 c.116.1.5 (A:74-253) Hypothetical protein YqeU {Bacillus subtilis [TaxId: 1423]}  ali model 3D-neighbors follow..  17  8............VYIASGLPKGDKLEWIIQKGTELGAHAFIAKKKRERWTKIAKEAAEQS--EVPRVMHSFQQLLQRMQDFDKCVVAYEESSKQGEISAPKGSSLLIVFGPEG-GLTEAEVERLTEQDGVTCGLGPRILRTETAPLYAL......... 169
9 -7.210d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}  ali model 3D-neighbors follow..  8  2ELIRPPICNVDQAVLVFSAVQPS-LDRFLVLVEANDIQPIICITKMDLIEDQDTEDTI-------------QAYAEDYRNIGYDVYLTSSKDQDSLADIIFQDKTTVFAGQSGVGKSSLLNAISELGLRTNEISEHLGRGKHTTRHVELIHT...... 147
10 -6.930d4guda1 c.23.16.0 (A:3-202) automated matches {Vibrio cholerae [TaxId: 243277]}  ali model 3D-neighbors follow..  10  3............VVIID---GCANISSVKFAIERLGYAVTISRDPQVVLAADKLFLPGVGTASEAMKNLTERDLIELVKRVEKPLLGICLGMQLLGKLSEEKGQKADEIVQCLGLVDGEVRLLQTGDLPLPHMG........................ 122
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Lukasz Jaroszewski, Zhanwen Li, S. Sri Krishna, Constantina Bakolitsa, John Wooley, Ashley M. Deacon, Ian A. Wilson, Adam Godzik, Exploration of Uncharted Regions of the Protein Universe. Plos Biology. 2009 Sep. 7(9):e1000205