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Query: d1j4aa2 c.23.12.1 (A:2-103,A:301-332) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]}, from SCOP207

Results of FFAS03 search in SCOP207
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst TKIFAYAIREDEKPFLKEWEDAHKDVEVEYTDKLLTPETVALAKGADGVVVYQQLDYIAETLQALADNGITKMSLRNVGVDNIDMAKAKELGFQITNVPVYSXYTTHAVRNMVVKAFDNNLELVEGKEAETPVKVLast
1 -68.700d1j4aa2 c.23.12.1 (A:2-103,A:301-332) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]}  ali model 3D-neighbors  100  1TKIFAYAIREDEKPFLKEWEDAHKDVEVEYTDKLLTPETVALAKGADGVVVYQQLDYIAETLQALADNGITKMSLRNVGVDNIDMAKAKELGFQITNVPVYSXYTTHAVRNMVVKAFDNNLELVEGKEAETPVKV 135
2 -61.600d1dxya2 c.23.12.1 (A:1-100,A:300-330) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]}  ali model 3D-neighbors follow..  31  2.KIIAYGARVDEIQYFKQWAKDT-GNTLEYHTEFLDENTVEWAKGFDGINSLQTTPYAAGVFEKMHAYGIKFLTIRNVGTDNIDMTAMKQYGIRLSNVPAYXTETAVHNMVYFSLQHLVDFLTKGETSTEVT... 131
3 -45.100d1mx3a2 c.23.12.1 (A:28-125,A:319-352) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]}  ali model 3D-neighbors follow..  14  2.LVALLDGRDCT---VEMPILKDVATVAFCDAQSTQEIHEKVLNEAVGALMYHTITLTREDLEKFKA--LRIIVRIGSGFDNIDIKSAGDLGIAVCNVPAASVXYSEQASIEMREEAAREIRRAITGRIPDSLK. 129
4 -42.700d1ygya2 c.23.12.1 (A:3-98,A:283-316) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}  ali model 3D-neighbors follow..  20  1SLPVVLIADKLAPSTVAALGD---QVEVRWVDGPDRDKLLAAVPEADALLVRSATTVDAEVLAAAPK--LKIVARAGVGLDNVDVDAATARGVLVVNAPTSXASAEAQDRAGTDVAESVRLALAGEFVPDAVNV. 130
5 -42.100d1sc6a2 c.23.12.1 (A:7-107,A:296-326) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  11  3DKIKFLLVEGVHQKALESLRAAGYTNIEFHKGALDDEQLKESIRDAHFIGLRSRTHLTEDVINAAEK--LVAIGAFAIGTNQVDLDAAAKRGIPVFNAPFSXSTQEAQENIGLEVAG-KLIKYSDNGSTLSAVN. 133
6 -39.200d1gdha2 c.23.12.1 (A:2-100,A:292-321) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]}  ali model 3D-neighbors follow..  15  1.KKKILITWPLPEAAMARARESYDVIAHGDDPKITIDEMIETAKSVDALLITLNEKCRKEVIDRIPE-NIKCISTYSIGFDHIDLDACKARGIKVGNAPHGXATQAREQANDLIDALFGGADMSYALA....... 130
7 -33.400d2naca2 c.23.12.1 (A:1-147,A:336-374) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]}  ali model 3D-neighbors follow..  11  48...QLLGSVSGELGLRKYLESNGHTLVVTSDKDGPDSVFERELVDADVVISQPPAYLTPERIAKAKN--LKLALTAGIGSDHVDLQSAIDRNVTVAEVTYCNSXTTLTAQARYAAGT-REILECFFEGRPIRDE. 177
8 -21.200d1qp8a2 c.23.12.1 (A:1-82,A:264-302) Putative formate dehydrogenase {Pyrobaculum aerophilum [TaxId: 13773]}  ali model 3D-neighbors follow..  10  14...........................EEELRKYFKIVRGGDLGNVEAALVS---RITAEELAKMPR--LKFIQVVTAGLDHLPWESIPP-HVTVAGNAGSNXGYGNERVWRQMVMEAVR............... 100
9 -9.530d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]}  ali model 3D-neighbors follow..  1......................................................................................................PNAIAEHAAIQAARILRQDKAMDEKVARHDLR. 32
10 -9.470d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}  ali model 3D-neighbors follow..  1.....................................................................................................NIHSAAEHALALLLAASRQIPAADASLREHTWK. 33
11 -9.380d1p9la1 c.2.1.3 (A:1-105,A:215-245) Dihydrodipicolinate reductase {Mycobacterium tuberculosis [TaxId: 1773]}  ali model 3D-neighbors follow..  11  2.RVGVLGAKGKVGTTMVRAVAAADDLTLSAELDAGDPLSLLTDGNTEVVIDFTHPDVVMGNLEFLIDNGIHAVV--TTGFTAERFQQVESWLVAKPNTSVLIAPNFX-TSFVPGVLLAVRRIAE........... 122
12 -9.190d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  1.....................................................................................................NTRSVAELVIGELLLLLRGVPEANAKAHRGVGN. 33
13 -9.040d3g85a_ c.93.1.0 (A:) automated matches {Clostridium acetobutylicum [TaxId: 272562]}  ali model 3D-neighbors follow..  170....................................KKLMKLKNTPKALFC-NSDSIALGVISVLNKRQISIIEIVAIGMNDREYTEFSTPPVTIVDIPIE---EMAGTCISLVEKLINR............... 252

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Godzik A. Discovering new genes with advanced homology detection. Trends Biotechnol. 2002 Aug;20(8):315-6.