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Query: d1jiha2 e.8.1.7 (A:1-389) DNA polymerase eta {Baker`s yeast (Saccharomyces cerevisiae) [TaxId: 4932]}, from SCOP207

Results of FFAS03 search in SCOP207
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MSKFTWKELIQLGSPSKAYESSLACIAHIDMNAFFAQVEQMRCGLSKEDPVVCVQWNSIIAVSYAARKYGISRMDTIQEALKKCSNLIPIHTAVFKKGEDFWQYHDGCGSWVQDPAKQISVEDHKVSLEPYRRESRKALKIFKSACDLVERASIDEVFLDLGRICFNMLMFDNEYELTGDLKLKDALSNIREAFIGGNYDINSHLPLIPEKIKSLKFEGDVFNPEGRDLITDWDDVILALGSQVCKGIRDSIKDILGYTTSCGLSSTKNVCKLASNYKKPDAQTIVKNDCLLDFLDCGKFEITSFWTLGGVLGKELIDVLDLPHENSIKHIRETWPDNAGQLKEFLDAKVKQSDYDRSTSNIDPLKTADLAEKLFKLSRGRYGLPLSSRLast
1 -138.000d1jiha2 e.8.1.7 (A:1-389) DNA polymerase eta {Baker`s yeast (Saccharomyces cerevisiae) [TaxId: 4932]}  ali model 3D-neighbors  100  1MSKFTWKELIQLGSPSKAYESSLACIAHIDMNAFFAQVEQMRCGLSKEDPVVCVQWNSIIAVSYAARKYGISRMDTIQEALKKCSNLIPIHTAVFKKGEDFWQYHDGCGSWVQDPAKQISVEDHKVSLEPYRRESRKALKIFKSACDLVERASIDEVFLDLGRICFNMLMFDNEYELTGDLKLKDALSNIREAFIGGNYDINSHLPLIPEKIKSLKFEGDVFNPEGRDLITDWDDVILALGSQVCKGIRDSIKDILGYTTSCGLSSTKNVCKLASNYKKPDAQTIVKNDCLLDFLDCGKFEITSFWTLGGVLGKELIDVLDLPHENSIKHIRETWPDNAGQLKEFLDAKVKQSDYDRSTSNIDPLKTADLAEKLFKLSRGRYGLPLSSR 389
2 -100.000d3gv7b1 e.8.1.7 (B:26-299) DNA polymerase iota {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  25  1.....................SSRVIVHVDLDCFYAQVEMISNPELKDKPLGVQQKYLVVTCNYEARKLGVKKLMNVRDAKEKCPQLVLVN---------------------------------GEDLTRYREMSYKVTELLEEFSPVVERLGFDENFVDLTEMVEKRLQQLQSDELSAVTVS------------------------------------GHVYNNQSINLLDVLHIRLLVGSQIAAEMREAMYNQLGLTGCAGVASNKLLAKLVSGVFKPNQQTVLLPESCQHLIHSL-NHIKEIPGIGYKTAKCL-EALGINSVRDLQTFS------PKILEKELGISV--------------------AQRIQKLSFGEDNSPVILS 271
3 -99.900d1t94a2 e.8.1.7 (A:75-407) DNA polymerase kappa {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  15  6..RKAQLQVDRFAMELEQSRNLSNTIVHIDMDAFYAAVEMRDNPELKDKPIAVGSMSMLSTSNYHARRFGVRAAMPGFIAKRLCPQLIIV----------------------------------PPNFDKYRAVSKEVKEILADYDPNFMAMSLDEAYLNITKHLEERQNWPEDKRRYFIKMGSSVENDNPGKEVNKLSEHERSISPLLFEESPSDVQPPGDPFQVNFEEQNNPQVFGTSAQEVVKEIRFRIEQKTTLTASAGIAPNTMLAKVCSDKNKPNGQYQILPNRQAVMDFIKDLPIRKVSGIGKVTEKML-KALGIITCTELYQ-------QRALLSLLFSETS--------------------WHYFLHISLGLGSTHL... 333
4 -72.900d1jx4a2 e.8.1.7 (A:1-240) DinB homolog (DBH) {Sulfolobus solfataricus, DNA polymerase IV [TaxId: 2287]}  ali model 3D-neighbors follow..  22  1.......................MIVLFVDFDYFYAQVEEVLNPSLKGKPVVVCDSGAVATANYEARKFGVKAGIPIVEAKKILPNAVYL----------------------------------PMRKEVYQQVSSRIMNLLREYSEKIEIASIDEAYLDISDKVR----------------------------------------------------------------------DYREAYNLGLEIKNKILEKEKITVTVGISKNKVFAKIAADMAKPNGIKVIDDEEVKRLIR--ELDIADVPGIGNITAEKL-KKLGINKLVDTLSIE------FDKLKGMIGE--------------------AKAKYLISLARDEYNEPIRTR 240
5 -7.260d2i5ha1 e.71.1.1 (A:16-195) Hypothetical protein AF1531 {Archaeoglobus fulgidus [TaxId: 2234]}  ali model 3D-neighbors follow..  11  57...................................................................................................................................................................................................................................................IGKGERDVVYKIKRRLRYEDLTPAAKLPYVIEHIIKQDEKKYVDFFNKADSITTRMHQLELLPGVGKKMMWAIIEE-PFESFEDIAQRVKGIQRPEKLIVSRIIYEIKNPQTKYKLFTA........................... 180
6 -6.620d2v1ma_ c.47.1.0 (A:) automated matches {Blood fluke (Schistosoma mansoni) [TaxId: 6183]}  ali model 3D-neighbors follow..  9  5IYEFTVKDINGVDVSLEKYRGHVCLIVNVACKCGATDKNYRQLQEMHTR-----VGKGLRILAFPCNQFGGQEPWAEAEIKKFVTEKYGVQFDMFSKIKVNGSDADDLYKFLKSRQHGTLTNNIKWNFSKFLVDRQ---QPVKRYSPTTAPYDIEG---DIMELLEKK............................................................................................................................................................................................................................. 163
7 -6.410d3wu2u_ a.60.12.2 (U:) Photosystem II 12 kDa extrinsic protein PsbU {Thermosynechococcus vulcanus [TaxId: 32053]}  ali model 3D-neighbors follow..  11  27............................................................................................................................................................................................................................................................................................................AFIQYRGLYPTLAKLIVKNAPYESVEDVLNIPGLTERQKQILRENLEHFTVTEVETALVEGGDRYNN...................... 93
8 -5.850d2i5ia1 c.6.2.8 (A:2-262) Uncharacterized protein EF3048 {Enterococcus faecalis [TaxId: 1351]}  ali model 3D-neighbors follow..  8  1....................SNKKLIINAD-D--FGYTPAVTQGIIE-----AHKRGVVTSTTALPTSPYFLEA--MESARISAPTLAIVHLTLTLNQAKPILPREMVPSLVDEAGYFWHQSIFEEKVNL-----EEVYNEWDAQIISFMKSGRRPDHIDSHHNVHGKNKKLLGVALALARKYQLPLRNASRSIETKDYLELYQDVRTPDEMLYQFYDKAISTETI---------------LQLLDMVVCSEGEVFEINCHPAFIDTILQNQSGYCMPRIREVEILTSQEVKEAIEERGILLANYESLA................................................................................ 260
9 -5.750d2duya1 a.60.2.7 (A:11-75) Uncharacterized protein TTHA1967 {Thermus thermophilus [TaxId: 274]}  ali model 3D-neighbors follow..  15  18............................................................................................................................................................................................................................................................................................................ELMALPGIGPVLARRIVEGRPYARVEDLLKVKGIGPATLERLRPYL........................................... 63
10 -5.740d2e1fa_ a.60.8.1 (A:) automated matches {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  11  19....................................................................................................................................................................................................................................................LVEARQKHANKMDVPPAI-LATNKILVDMAK--MRPTTVE----------------NVKRIDGVSEGKAAMLAPLLEV................................................................... 77
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 0 4 6   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Godzik A. cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences. Bioinformatics. 2006 May 26;