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Query: d1jx4a1 d.240.1.1 (A:241-341) DinB homolog (DBH) {Sulfolobus solfataricus, DNA polymerase IV [TaxId: 2287]}, from SCOP207

Results of FFAS03 search in SCOP207
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst VRKSIGRIVTMKRNSRNLEEIKPYLFRAIEESYYKLDKRIPKAIHVVAVTEDLDIVSRGRTFPHGISKETAYSESVKLLQKILEEDERKIRRIGVRFSKFILast
1 -65.700d1jx4a1 d.240.1.1 (A:241-341) DinB homolog (DBH) {Sulfolobus solfataricus, DNA polymerase IV [TaxId: 2287]}  ali model 3D-neighbors  100  1VRKSIGRIVTMKRNSRNLEEIKPYLFRAIEESYYKLDKRIPKAIHVVAVTEDLDIVSRGRTFPHGISKETAYSESVKLLQKILEEDERKIRRIGVRFSKFI 101
2 -51.700d1t94a1 d.240.1.1 (A:411-515) DNA polymerase kappa {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  20  3.RKSMSVERTF-SEINKAEEQYSLCQELCSELAQDLQKERGRTVTIKLKNVNFEVKTRASTVSSVVSTAEEIFAIAKELLKTEIDAPLRLRLMGVRISS.. 105
3 -45.000d1unnc1 d.240.1.1 (C:243-351) DNA polymerase IV {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  13  1....VGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKIARQGVKLKFDDFQQTTQEHVW--PRLNKADLIATARKTWDERRG-GRGVRLVGLHVTLL. 97
4 -37.800d3gv7b2 d.240.1.1 (B:300-414) DNA polymerase iota {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  11  1..QSFSEEDSF-KKCSSEVEAKNKIEELLASLLNRVCQDGPHTVRLIIRRYSYGRESRQCPIPSHVDVMTPMVDILMKLFRNMVNVKMPLTLLSVCFCNL. 114
5 -33.200d1jiha1 d.240.1.1 (A:390-509) DNA polymerase eta {Baker`s yeast (Saccharomyces cerevisiae) [TaxId: 4932]}  ali model 3D-neighbors follow..  2VVKSMMSNKNLGKSCNSIVDCISWLEVFCAELTSRIQDLEPRTVSISLKTKSYEVYRKSGPVAYKGINSHELLKVGIKFVTDLDIKGKPLTKLSMTITNF. 117
6 -7.230d2ap1a2 c.55.1.10 (A:1-117) Putative regulator protein YcfX {Salmonella typhimurium [TaxId: 90371]}  ali model 3D-neighbors follow..  11  8.......................................GGTKIALGVFDSTRRLQWEKR-VPTPHTSYSAFLDAVCELVEEADQRFGVKGSVGIGIPGMP 68
7 -5.950d3bp8a2 c.55.1.10 (A:82-210) Mlc protein {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  7...............................LSLRISRGEIFLALRDLSSKLVVEESQELALKDDSPLLDRIISHIDQFFIRHQKKLERLTSIAITLPGII 76
8 -5.810d3dy8a2 a.211.1.2 (A:182-505) High-affinity cGMP-specific 3`,5`-cyclic phosphodiesterase 9A, PDE9A {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  12  171IRQGM--TLILATDMARHAEIMDSFKEKMENFDYSNEEHMTLLKMILIKCCDISNEVRPMEVAE---------PWVDCLLEEYFMQSDREKSEGLPVAPFM 261
9 -5.320d1f1ma_ a.24.12.1 (A:) Outer surface protein C (OspC) {Lyme disease spirochete (Borrelia burgdorferi), different strains [TaxId: 139]}  ali model 3D-neighbors follow..  10  6ISKKITESNAVVLAVKEVETLLTSIDELAKAIGKKIKSDV............................................................. 45
10 -5.180d2aa4a1 c.55.1.10 (A:1-119) N-acetylmannosamine kinase NanK {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  13  9.......................................GGTKLAAALIGADGQIRDRRELPTPASQTPEALRDALSALVSPLQAH---AQRVAIASTGII 67

FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 0 4 6   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Godzik A. cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences. Bioinformatics. 2006 May 26;