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Query: d1kfta_ a.60.2.3 (A:) Excinuclease UvrC C-terminal domain {Escherichia coli [TaxId: 562]}, from SCOP207

Results of FFAS03 search in SCOP207
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .
# Score Template Links and tools%idFirst TSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPGISQGLAEKIFWSLKHLast
1 -36.500d1kfta_ a.60.2.3 (A:) Excinuclease UvrC C-terminal domain {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors  100  1TSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPGISQGLAEKIFWSLKH 56
2 -28.900d1x2ia1 a.60.2.5 (A:2-69) ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]}  ali model 3D-neighbors follow..  29  10.LIVEGLPHVSATLARRLLKHFGSVERVFTASVAELMKVEGIGEKIAKEIRRVITA 64
3 -26.900d2a1jb1 a.60.2.5 (B:220-296) DNA excision repair protein ERCC-1 {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  33  17TECLTTVKSVNKTDSQTLLTTFGSLEQLIAASREDLALCPGLGPQKARRLFDVLHE 72
4 -22.100d2a1ja1 a.60.2.5 (A:837-898) DNA repair endonuclease XPF {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  18  3.DFLLKMPGVNAKNCRSLMHHVKNIAELAALSQDELTSILG-NAANAKQLYDFIHT 56
5 -19.000d1z4da1 a.60.4.1 (A:5-64) DNA repair protein Rad51, N-terminal domain {Methanococcus voltae [TaxId: 2188]}  ali model 3D-neighbors follow..  26  1...LTDLPGVGPSTAEKLVEAYIDFMKIATATVGELTDIEGISEKAAAKMIMGARD 54
6 -18.800d2z43b1 a.60.4.1 (B:12-72) DNA repair protein Rad51, N-terminal domain {Sulfolobus solfataricus [TaxId: 273057]}  ali model 3D-neighbors follow..  20  1.KTINDLPGISQTVINKLIEAYSSLETLAVASPQDLSVAAGIPLSTAQKIIKEARD 56
7 -16.500d1u9la_ a.60.4.2 (A:) Transcription elongation protein NusA {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  12  5IDTFTKYLDIDEDFATVLVEEFSTLEELAYVPMKELLEIEGLDEPTVEALRERAKN 61
8 -13.800d2duya1 a.60.2.7 (A:11-75) Uncharacterized protein TTHA1967 {Thermus thermophilus [TaxId: 274]}  ali model 3D-neighbors follow..  26  16LEELMALPGIGPVLARRIVEG---------ARVEDLLKVKGIGPATLERLRPYLR. 64
9 -13.000d2edua1 a.60.2.7 (A:8-98) KIF22, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  21  32ARDLRSLQRIGPKKAQLIVGWRELHGPFS--QVEDLERVEGITGKQMESFLKAN.. 83
10 -12.900d1ixra1 a.60.2.1 (A:63-135) DNA helicase RuvA subunit, middle domain {Thermus thermophilus [TaxId: 274]}  ali model 3D-neighbors follow..  29  10.ELLLSVSGVGPKVALALLSALPPARALLEGDARLLTSASGVGRRLAERIALELKG 67
11 -12.700d1cuka2 a.60.2.1 (A:65-142) DNA helicase RuvA subunit, middle domain {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  30  11...LIKTNGVGPKLALAILSGMSAVNAVEREEVGALVKLPGIGKKTAERLIVEMKD 66
12 -12.700d3wu2u_ a.60.12.2 (U:) Photosystem II 12 kDa extrinsic protein PsbU {Thermosynechococcus vulcanus [TaxId: 32053]}  ali model 3D-neighbors follow..  18  25IAAFIQYRGLYPTLAKLIVKN---------ESVEDVLNIPGLTERQKQILRENL.. 72
13 -12.400d3ldaa1 a.60.4.1 (A:78-144) DNA repair protein Rad51, N-terminal domain {Baker`s yeast (Saccharomyces cerevisiae) [TaxId: 4932]}  ali model 3D-neighbors follow..  15  8...KLQVNGITMADVKKLRESLHTAEAVAYAPRKDLLEIKGISEAKADKLLNEAAR 61
14 -12.300d1dgsa1 a.60.2.2 (A:401-581) NAD+-dependent DNA ligase, domain 3 {Thermus filiformis [TaxId: 276]}  ali model 3D-neighbors follow..  30  112......LPGVGEVLARNLARRFGTMDRLLEASLEELIEVEEVGELTARAILETLKD 161
15 -11.800d2csba3 a.60.2.4 (A:410-464) Topoisomerase V {Methanopyrus kandleri [TaxId: 2320]}  ali model 3D-neighbors follow..  26  2.AELTKKEGVGRKTAERLLRAFGNPERVKQLAIEKLASVEGVGERVLRSL...... 54
16 -11.600d3bzca1 a.60.2.6 (A:474-563) Transcriptional accessory factor Tex {Pseudomonas aeruginosa [TaxId: 287]}  ali model 3D-neighbors follow..  18  34AALLARISGLNSTLAQNIVAHRDANGAFR--TRDELKKVSRLGEKTFEQAAGFLR. 86
17 -11.400d2csba4 a.60.2.4 (A:465-519) Topoisomerase V {Methanopyrus kandleri [TaxId: 2320]}  ali model 3D-neighbors follow..  33  4.ASLISIRGIDRERAERLLKKYGGYSKVREAGVEELRED-GLTDAQIREL...... 51
18 -9.960d2i5ha1 e.71.1.1 (A:16-195) Hypothetical protein AF1531 {Archaeoglobus fulgidus [TaxId: 2234]}  ali model 3D-neighbors follow..  23  114MHQLELLPGVGKKMMWAIIEE----KKRPFESFEDIAQRVKGIQRPEKLIVSRI.. 164
19 -9.930d3orya2 a.60.7.0 (A:225-339) automated matches {Desulfurococcus amylolyticus [TaxId: 94694]}  ali model 3D-neighbors follow..  34  20....DGFEGIGPKKALQLVKAYGGIEKIPK.......................... 45
20 -9.390d1bgxt1 a.60.7.1 (T:174-289) 5` to 3` exonuclease domain of DNA polymerase Taq {Thermus aquaticus [TaxId: 271]}  ali model 3D-neighbors follow..  24  17SDNLPGVKGIGEKTARKLLEEWGSLEAL-------LKNLDRLKPAIREKILAHMDD 65
21 -9.390d5hmla2 a.60.7.1 (A:186-290) T5 5`-exonuclease {Bacteriophage T5 [TaxId: 10726]}  ali model 3D-neighbors follow..  21  18GDNIRGVEGIGAKRGYNIIREFGNVLDI............................ 45
22 -9.310d1ul1x1 a.60.7.1 (X:218-357) Flap endonuclease-1 (Fen-1 nuclease) {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  26  15SDYCESIRGIGPKRAVDLIQKHKSIEEIVR.......................... 44
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Godzik A. cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences. Bioinformatics. 2006 May 26;