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Query: d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]}, from SCOP207

Results of FFAS03 search in SCOP207
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst EETADSTLCHILNLYRRATWLHQALREGTRVQSVEQIREVASGAARIRGETLGIIGLGRVGQAVALRAKAFGFNVLFYDPYLSDGVERALGLQRVSTLQDLLFHSDCVTLHCGLNEHNHHLINDFTVKQMRQGAFLVNTARGGLVDEKALAQALKEGRIRGAALDVHESEPFSFSQGPLKDAPNLICTPHAAWLast
1 -99.900d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]}  ali model 3D-neighbors  100  1EETADSTLCHILNLYRRATWLHQALREGTRVQSVEQIREVASGAARIRGETLGIIGLGRVGQAVALRAKAFGFNVLFYDPYLSDGVERALGLQRVSTLQDLLFHSDCVTLHCGLNEHNHHLINDFTVKQMRQGAFLVNTARGGLVDEKALAQALKEGRIRGAALDVHESEPFSFSQGPLKDAPNLICTPHAAW 193
2 -88.400d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}  ali model 3D-neighbors follow..  37  3HSAAEHALALLLAASRQIPAADASLREHTWKRSS-------FSGTEIFGKTVGVVGLGRIGQLVAQRIAAFGAYVVAYDPYVSPARAAQLGIELL-SLDDLLARADFISVHLPKTPETAGLIDKEALAKTKPGVIIVNAARGGLVDEAALADAITGGHVRAAGLDVFATEPC--TDSPLFELAQVVVTPHLG. 184
3 -86.800d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]}  ali model 3D-neighbors follow..  33  2.SVAEHVVMMILSLVRNYLPSHEWARKGGWNIA-----DCVSHAYDLEAMHVGTVAAGRIGLAVLRRLAPFDVHLHYTDRHRPESVEKELNLTWHATREDMYPVCDVVTLNCPLHPETEHMINDETLKLFKRGAYIVNTARGKLCDRDAVARALESGRLAGYAGDVWFPQPAP-KDHPWRTMPYNGMTPHIS. 187
4 -85.200d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  32  3RSVAELVIGELLLLLRGVPEANAKAHRGVGNKLA-------AGSFEARGKKLGIIGYGHIGTQLGILAESLGMYVYFYDIENKLPLGNAT---QVQHLSDLLNMSDVVSLHVPENPSTKNMMGAKEISLMKPGSLLINASRGTVVDIPALADALASKHLAGAAIDVFPTEPATNSTSPLAEFDNVLLTPHIG. 187
5 -83.200d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]}  ali model 3D-neighbors follow..  30  3VATAEIAMLLLLGSARRAGEGEKMIRTRSWPG----WEPLELVGEKLDNKTLGIYGFGSIGQALAKRAQGFDMDIDYFDTHASSSDEASYQATFHDSLDSLLSVSQFFSLNAPSTPETRYFFNKATIKSLPQGAIVVNTARGDLVDNELVVAALEAGRLAYAGFDVFAGEPNI--NEGYYDLPNTFLFPHIG. 189
6 -79.500d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]}  ali model 3D-neighbors follow..  26  2NAIAEHAAIQAARILRQDKAMDEKVARHDLRWA-------PTIGREVRDQVVGVVGTGHIGQVFMQIMEGFGAKVITYDIFRNPELEKK---YYVDSLDDLYKQADVISLHVPDVPANVHMINDESIAKMKQDVVIVNVSRGPLVDTDAVIRGLDSGKIFGYAMDVYEGEVPDARLADLIARPNVLVTPKTAF 197
7 -79.400d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Pyrobaculum aerophilum [TaxId: 13773]}  ali model 3D-neighbors follow..  23  2DAVAEFALALLLAPYKRIIQYGEKMKRGDYGRD--------VEIPLIQGEKVAVLGLGEIGTRVGKILAALGAQVRGFSRTPKEGPWRF-----TNSLEEALREARAAVCALPLNKHTRGLVKYQHLALMAEDAVFVNVGRAEVLDRDGVLRILKERPQFIFASDVWWGRNDFAKDAEFFSLPNVVATPWVA. 180
8 -32.500d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  17  18..........................................TDVMIAGKVAVVAGYGDVGKGCAQALRGFGARVIITEIDPINALQAAMEGYEVTTMDEACQEGNIFVT----TTGCIDIILGRHFEQMKDDAIVCNIGHFD-IDVKWLNENAVEKVNIKPQVDRYRLKN--GRRIILLAEGRLV....... 156
9 -26.900d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  18  8.............................................RPAATRVMLLGSGELGKEVAIECQRLGVEVIAVDRYADAPAMHVAHRSHVINMLDGDALRRVVELEKPIVPEIEAIATDMLIQLEEEGLNVVPCARATKLTM.............................................. 111
10 -16.400d4ypoa1 c.2.1.0 (A:1-180) automated matches {Mycobacterium tuberculosis [TaxId: 1773]}  ali model 3D-neighbors follow..  17  12..............................................IQGRKVGVIGYGSQGHAHSLSLRDSGVQVRVGLKQGSRSRPVEEQGLDVDTPAEVAKWADVVMVLAP-DTAQAEIFAGDIEPNLKPGDALFFGHGLNVHFGLIKPPADVA..................................... 121
11 -14.800d5je8a1 c.2.1.0 (A:1-163) automated matches {Bacillus cereus [TaxId: 226900]}  ali model 3D-neighbors follow..  17  2.................................................KKIGFIGLGNMGLPMSKNLVKSGYTVYGVDLNKEAASFEKEGGIIGLSISKLAETCDVVFTSLPSPRAVEAVYFGAEFENGHSNVVFIDTSTVSPQLNKQLEEAAKEKKVDFLAAPV........................... 121
12 -14.800d4dlla1 c.2.1.0 (A:29-190) automated matches {Polaromonas sp. [TaxId: 296591]}  ali model 3D-neighbors follow..  15  4.................................................RKITFLGTGSMGLPMARRLCEAGYALQVWNRTPARASLAALGATIHEQARAAARDADIVVSMLENGAVVQDVLAQGVAAAMKPGSLFLDMASITPREARDHAARLGALGIAHLDTPV........................... 122
13 -14.600d4gwga1 c.2.1.0 (A:1-176) automated matches {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  15  3.................................................ADIALIGLAVMGQNLILNMNDHGFVVCAFNRTFLANEAKGTKVVGAQSLKEMVSKLKKPRRIILLVKAGQAVDDEKLVPLLDTGDIIIDGGNSEYRDTTRRCRDLKAKGILFVGSGVSGGEEGARYGPSLM............. 141
14 -14.400d2gf2a1 c.2.1.0 (A:41-201) automated matches {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  20  2...................................................VGFIGLGNMGNPMAKNLMKHGYPLIIYDVFPDAKEFQDAGEQVVSSPADVAEKADRIITMLPTSINAIEAYSGANLKKVKKGSLLIDSSTIDPAVSKELAKEVEKMGAVFMDAPV........................... 119
15 -14.200d3g0oa1 c.2.1.0 (A:6-169) automated matches {Salmonella typhimurium [TaxId: 602]}  ali model 3D-neighbors follow..  16  4...................................................VGIVGLGSMGMGAARSCLRAGLSTWGADPQACANLLAEGACGAAASAREFAGVVDALVILVVNAAQVRQVLEDGVAHLMKPGSAVMVSSTISSADAQEIAAALTALNLNMLDAPV........................... 122
16 -14.000d2uyya1 c.2.1.0 (A:262-429) automated matches {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  16  7.................................................KKIGFLGLGLMGSGIVSNLLKMGHTVTVWNRTAEKDLFIQEGARLGRTPAEVVSTCDITFACVSDPKAAKDLVPSGVLQGIRPGKCYVDMSTVDADTVTELAQVIVSRGGRFLEAPV........................... 126
17 -14.000d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. PCC 6803 [TaxId: 1148]}  ali model 3D-neighbors follow..  15  3...................................................IGVVGLGLIGASLAGDLRRRGHYLIGVSQSTCEKAVERQLVDEAGQDLSLLQTAKIIFLCTPIQLILPTL--EKLIPHLSPTAIVTDVAKTAIAEP---ASQLWSGFIGGHPMAGTAAQGIDGAEENLFVNAPYVLTP.... 139
18 -13.700d3ws7a1 c.2.1.0 (A:1-161) automated matches {Pyrobaculum calidifontis [TaxId: 410359]}  ali model 3D-neighbors follow..  20  3...................................................VGFIGLGIMGGPMATHLLKAGFLAAVYNRTREKKPFAEAGVYVAESPADLAKRVDVVIVMVSDAPDVEQVLPSGVVEGARPGLIVVDMSTNSPDWARKFAERLAQYGIEFLDAPV........................... 120
19 -13.400d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Methanobacterium thermoautotrophicum [TaxId: 145262]}  ali model 3D-neighbors follow..  18  2..................................................RVGFIGFGEVAQTLASRLRSRGVEVVTSLEGRSPSTERARTVGVTETSEEDVYSCPVVISAVTPGVA----LGAARRAGRHVRGIYVDINNISPETVRMASSLIEKGGFVDAAI............................. 112
20 -13.200d2cvza2 c.2.1.6 (A:2-157) Hydroxyisobutyrate dehydrogenase {Thermus thermophilus [TaxId: 274]}  ali model 3D-neighbors follow..  14  1.................................................EKVAFIGLGAMGYPMAGHLARRFPTLVWNRTFEKALRHQEEFGSEAVPLE-RVAEARVIFTCLPTTREVYEVAEA-LYPYLREGTYWVDATSGEPEASRRLAERLREKGVTYLDAPV........................... 115
21 -12.700d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]}  ali model 3D-neighbors follow..  11  10.................................................HKIVIVGYGKLGGLFARYLRASGYPISILDR------------EDWAVAESILANADVVIVSVPINLTLETI--ERLKPYLTENMLLADLTSVKREPLAKMLEVHTGAVLGL--------HPMFGADIASMAKQVVVRCD.... 128
22 -12.600d1saya1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}  ali model 3D-neighbors follow..  23  30..............................................VKPGKVVILGGGVVGTEAAKMAVGLGAQVQIFDINVERLSYLELLYSNSAEIETAVAEADLLAVLVP-GRRAPILVPASLVEQMRTGSVIVDVAQGGCVE............................................... 140
23 -12.600d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}  ali model 3D-neighbors follow..  16  27..............................................VPPARVLVFGVGVAGLQAIATAKRLGAVVMATDVRAAKEMGEEFRKKQAEAVLKELVKTDIATALIP-GKPAPVLITEEMVTKMKPGSVIIDLAAGGNCPLSEPGKIVVKHGVKIVGHTNVPSR....................... 183
24 -12.500d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}  ali model 3D-neighbors follow..  17  2.................................................QNVLIVGVGFMGGSFAKRRSGFKGKIYGYDI--PESISKAVDLGIIDEGKVEDFSPDFVMLSSPVRTFREIA--KKLSYILSEDATVTDQGSVKGKLVYDLENILGKRFVGGHPIAGTEKSGVEYSLDNLYEGKKVILTP.... 145
25 -12.200d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]}  ali model 3D-neighbors follow..  9  9.............................................QLRDRDCLIVGGGDVAERKARLLLEAGARLTVNALTFIPQFTVWANEGMLTLVEGPFDETLLDSCWLAIAATDDDTVNQRVSDAAESRRIFCNVV..................................................... 103
26 -11.900d2dapa1 c.2.1.3 (A:1-118,A:269-320) Diaminopimelic acid dehydrogenase (DAPDH) {Corynebacterium glutamicum [TaxId: 1718]}  ali model 3D-neighbors follow..  11  1..............................................MTNIRVAIVGYGNLGRSVEKLIAKQPDMDLVGIFSRRATLDTKTPVFDVADVDKHADDVDVLFLCMGFAQFACTVDTYDNHRDIPRHRQVMNEAATAIAFGRAAHRMKQQGQSGAFTV............................. 150
27 -11.800d3fr7a1 c.2.1.0 (A:86-307) automated matches {Oryza sativa [TaxId: 39947]}  ali model 3D-neighbors follow..  13  38..............................................KGIKQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKIGLRKGSKSFDELGDIWETVSGSDLVLLLISDAAQAD--NYEKIFSHMKPNSILGLSH..................................................... 141
28 -11.700d2i76a2 c.2.1.6 (A:2-154) Hypothetical protein TM1727 {Thermotoga maritima [TaxId: 2336]}  ali model 3D-neighbors follow..  10  1..................................................VLNFVGTGTLTRFFLECKDRYEIGYILSRSIDRARNLAEVYGGKAATLEKHPELNGVVFVIVP-----DRYIKTVANHLNLGDAVLVHCS--GFLSSEIFKKSGRAS.................................... 101
29 -11.500d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]}  ali model 3D-neighbors follow..  25  24.............................................SLDGLTVLVQGLGAVGGSLASLAAEAGAQLLVADTDTERAHAVALGHTAVALEDVLSTPCDV----------------------------FAPCAMGGVITTEVA-RTLDCSVVAGAANNVIADE----AASDILHARGILYAPDF.. 137
30 -11.200d1j5pa4 c.2.1.3 (A:1-108,A:220-241) Hypothetical protein TM1643 {Thermotoga maritima [TaxId: 2336]}  ali model 3D-neighbors follow..  13  3...................................................VLIIGMGNIGKKLVELGNFEKIYAYDRISKDIPGVVRLDEFQVPSDVSTVVECA------------SPEAVKEYSLQILKNPVNYIIISTSAFADEVFRERFFSELKNSPARVFFPSGXSMLTVYSILRTLRNLESKIIFG. 131
31 -11.200d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]}  ali model 3D-neighbors follow..  22  3...................................................IGIIGVGKMASAIIKGLKQTPHELIISGSSLEKEIAEQLALPYAMSHQDLIDQVDLVILGI------KPQLFETVLKPLHFKQPIISMAAG--ISLQRLATFV------GQDLPLLRIMP...................... 110
32 -11.000d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  14  2.................................................KQVCVLGNGQLGRMLRQAGEPLGIAVWPVGL---------------AEPAAVPFQQSVITAE.................................................................................. 49
33 -10.900d3k96a1 c.2.1.0 (A:3-180) automated matches {Coxiella burnetii [TaxId: 227377]}  ali model 3D-neighbors follow..  16  4.................................................HPIAILGAGSWGTALALVLARKGQKVRLWNNRYLPNYPFPETLKAYCDLKASLEGVTDILIVVP--SFAFHEVITRMKPLIDAKTRIAWGTKGLAKGSRLLHEVVATAVISGPATEVAANLP...................... 147
34 -10.800d2izza1 c.2.1.0 (A:1-164) automated matches {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  20  2..................................................SVGFIGAGQLAFALAKGFTAAGVKIMASSPDMDLSALRKMGVKLTPHNKETVQHSDVLFL--AVKPHIIPFILDEIGADIEDRHIVVSCAAG--VTISSIEKKLSAFRPAPRVIRCMTNTP...................... 125
35 -10.800d3vpxa2 c.2.1.0 (A:145-363) automated matches {Sporosarcina psychrophila [TaxId: 1476]}  ali model 3D-neighbors follow..  19  26.............................................SLAGKTVAVQGVGNVAYALCEYLHEEGAKLIITDINEEARAVDAFGATAVGINEIYSQEADI----------------------------FAPCALGAIINDETI-PQLKAKVIAGSANNQLKET----RHGDLIHEMGIVYAPDY.. 140
36 -10.700d1ml4a2 c.78.1.1 (A:152-308) Aspartate carbamoyltransferase catalytic subunit {Pyrococcus abyssi [TaxId: 29292]}  ali model 3D-neighbors follow..  16  1.............................................RIDGLKIGLLG-GRTVHSLAEALTFYDVELYLISPIVEELREKGMKVVETTTLEDVIGKLDVLYVTRIQKERGSYQVNLKVLEKAKDELRIMHPLRVDEIHPEIYFRQVFNGVPVRMAL............................. 149
37 -10.700d1qp8a2 c.23.12.1 (A:1-82,A:264-302) Putative formate dehydrogenase {Pyrobaculum aerophilum [TaxId: 13773]}  ali model 3D-neighbors follow..  13  85.YGNERVWRQMVMEA---------------------------------VRNLITYATGGRPRNIAKREDYIG......................................................................................................................... 122
38 -10.500d5bsea1 c.2.1.0 (A:3-169) automated matches {Medicago truncatula [TaxId: 3880]}  ali model 3D-neighbors follow..  18  4............................................IPADSYTLGFIGAGKMAESIAKGAVRSGVRIKTAIHSNPRTAFESIGITVLSSNDDVVRDSNVVVF--SVKPQLLKDVVLKLKPLLTKDKLLVSVAAG--IKMKDLQEWAGHERF.................................. 120
39 -10.300d1evya2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]}  ali model 3D-neighbors follow..  11  8.................................................NKAVVFGSGAFGTALAMVLSKKCREVCVWNVLFLKGVQLASNITFTSDVEKAYNGAEIILFVIPLRGFFEKSGGNLIAYAKEKQVPVLVCTKGIERSTLKFPAEIIGEFLPSPLLSVLA......................... 144
40 -10.300d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]}  ali model 3D-neighbors follow..  14  2..................................................IVSILGAGAMGSALSVPLVDNGNEVRIWGTEFDTEILKSIEIFWPEQLEKCLENAEVVLLGVS--TDGVLPVMSRILPYLKDQYIVLISKGLEAVWRLKHDLRERTVAITGPAIEVAKRMP...................... 149
41 -10.300d1gtma1 c.2.1.7 (A:181-419) Glutamate dehydrogenase {Pyrococcus furiosus [TaxId: 2261]}  ali model 3D-neighbors follow..  17  29.............................................TLKGKTIAIQGYGNAGYYLAKIMSEDFGMKVVAVSDSKGGIYNPDGLNADEVLKWKNEHGSVKDFPGATNITNEELLELE---------VLAPAAIEEVITKKN-ADNIKAKIVAEVA-----NGPVTPEADEILFEKGILQIPDF.. 161
42 -10.300d2x5oa1 c.5.1.0 (A:1-93) automated matches {Escherichia coli [TaxId: 668369]}  ali model 3D-neighbors follow..  23  1............................................ADYQGKNVVIIGLGLTGLSCVDFFLARGVTPRVMDPPGLDKLPEAVERHTGSLNDEWLMAADLIVASPGIALAHPSLSAAAD................................................................... 86
43 -10.200d1edza1 c.2.1.7 (A:149-319) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Baker`s yeast (Saccharomyces cerevisiae) [TaxId: 4932]}  ali model 3D-neighbors follow..  18  24...........................................GNRLYGKKCIVINRSEVGRPLAALLANDGATVYSVDVNLNKHHVEDLGEYSEDLLKKCSLDSDVVITGVP---SENYKFPTE---YIKEGAVCINFACTKNFSDDVKEKASLYVPMTGK............................... 149
44 -10.100d1tlta1 c.2.1.3 (A:5-127,A:268-308) Virulence factor MviM {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  20  4...................................................IGVVGLGGIAQKLAAASDWTLQGAWSPTRAKALPICESWRIPYADSLSSLAASCDAVFVHSSLNAGVHVCVDKPLAENLRDAERLVELAA.................................................... 109
45 -10.100d3d6nb2 c.78.1.0 (B:143-291) automated matches {Aquifex aeolicus [TaxId: 63363]}  ali model 3D-neighbors follow..  14  1.............................................EVKDLRVLYVG-SRVFRSGAPLLNMFGAKIGVCGP-LIPRDVEVFKVDVFDDVDKGIDWADVVIWLRLQKERQKENYIPSTKERFEKVKLYMHVNRNVDIDHELIQEQVKNGIPVRKAI............................. 143
46 -10.000d2rcya1 c.2.1.0 (A:2-156) automated matches {Plasmodium falciparum [TaxId: 36329]}  ali model 3D-neighbors follow..  17  1..............................................MENIKLGFMGLGQMGSALAHGIANANI-IKKENLFYYGPSKKNTTLNYMSSNEELARHCDIIVCAVKPDIAGSVL---NNIKPYLSSKLLISICGGLNIGK.............................................. 97
47 -9.730d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}  ali model 3D-neighbors follow..  16  2.................................................KTYAVLGLGNGGHAFAAYLALKGQSVLAWDIEGPGLAGTAHPDLLTSDIGLAVKDADVILIVVPAIHHASIA---ANIASYISEGQLIILNPGATGGALEFRKILRENGAPEVTIGETSSML...................... 136
48 -9.650d4e12a1 c.2.1.0 (A:1-189) automated matches {Acinetobacter baylyi [TaxId: 202950]}  ali model 3D-neighbors follow..  13  5.................................................TNVTVLGTGVLGSQIAFQTAFHGFAVTAYDI--GAAQKALGGIRYSDDLAQAVKDADLVIEAVPESLDLKRDIYTKLGELAPAKTIFATNSSTLLPSDLVGYTGRGDKFLA................................. 141
49 -9.650d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  18  31................................................GKKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSEAKEAAKALGADEVRNADEMAAHLKSFDFILNTVAAPHNLDDFTTLLKRDGTMTLVGAPATPHKSPEVFNLIMKRRAIAGSMI............................. 150
50 -9.350d4a8ta2 c.78.1.0 (A:149-317) automated matches {Enterococcus faecalis [TaxId: 1351]}  ali model 3D-neighbors follow..  14  2.............................................KLEDCKVVFVG-TQVCFSLGLITTKMGMNFVHFGPKLAKNCEVSGGSFLVTDDASSVEGADFLYTDVWYGLYEAEQVNQEMMDRAGANCKFMHCLRGEEVTDEVI........................................... 135
51 -9.350d1hwxa4 c.2.1.7 (A:209-501) Glutamate dehydrogenase {Cow (Bos taurus) [TaxId: 9913]}  ali model 3D-neighbors follow..  12  33.............................................GFGDKTFAVQGFGNVGLHSMRYLHRFGAKCVAVGES-DGSIWNPDGID-PKELEDFKLQHGTILGFPKAKIYEGSILEVD---------ILIPAASEKQLTKSNAPRVKAKIIAEGA------NGPTTPQADKIFLERNIMVIPDL.. 163
52 -9.070d3keoa2 c.2.1.0 (A:82-212) automated matches {Streptococcus agalactiae [TaxId: 216495]}  ali model 3D-neighbors follow..  17  6...................................................VMLVGCGNIGRALLHFHDRNKMQISMADSNDLVGKTTEDGIPVISTINDHLIDSETAILTVP-QEVADILVKAGIKGILSFSPVHLTLPKDIIVQYVDLTSELQT..................................... 122
53 -9.010d4oh7a2 c.78.1.0 (A:152-307) automated matches {Brucella melitensis [TaxId: 546272]}  ali model 3D-neighbors follow..  19  2..............................................IKGKTFAWMG-NNVLHSLVEAAARFDFNVNIATPYIDWARANGAGIMSTTDPEKAASGADCIVTDTWVSMGQEDQVNANLMAKADPKALFMHAHRGEEVTDEVI........................................... 128
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Godzik A. Discovering new genes with advanced homology detection. Trends Biotechnol. 2002 Aug;20(8):315-6.