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Query: d1n2xa1 a.60.13.1 (A:115-215) Putative methyltransferase TM0872, insert domain {Thermotoga maritima [TaxId: 2336]}, from SCOP207

Results of FFAS03 search in SCOP207
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst NRGFTFEREEPLDMRMDLESEVTAQKVLNELPEEELARIIFEYGEEKRFARRIARKIVENRPLNTTLDLVKAVREALPSYEIRRRKRHFATKTFQAIRIYVLast
1 -73.400d1n2xa1 a.60.13.1 (A:115-215) Putative methyltransferase TM0872, insert domain {Thermotoga maritima [TaxId: 2336]}  ali model 3D-neighbors  100  1NRGFTFEREEPLDMRMDLESEVTAQKVLNELPEEELARIIFEYGEEKRFARRIARKIVENRPLNTTLDLVKAVREALPSYEIRRRKRHFATKTFQAIRIYV 101
2 -19.200d1n2xa2 c.66.1.23 (A:8-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]}  ali model 3D-neighbors follow..  17  109.NRELENLKEFLKKAEDLLNPGGRIVVISFHSLED--RIVKETFRNSKKLRILTE-----KPVRPSEEEIRENPRA------RSGRLRAAERI........ 187
3 -7.440d3etja1 b.84.2.1 (A:277-355) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), C-domain {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  11  1..................NNPSVMINLIGSDVNYDWLKLLHWYDKEVRPGRKVGHLNLTDSDTSRLTATLEALIPLLPPE..................... 66
4 -6.520d2duya1 a.60.2.7 (A:11-75) Uncharacterized protein TTHA1967 {Thermus thermophilus [TaxId: 274]}  ali model 3D-neighbors follow..  42  11...........................LNEASLEELMAL-------PGIGPVLARRIVEGRPYARVEDLLKV............................. 48
5 -6.310d3wu2u_ a.60.12.2 (U:) Photosystem II 12 kDa extrinsic protein PsbU {Thermosynechococcus vulcanus [TaxId: 32053]}  ali model 3D-neighbors follow..  21  20...........................LNNTNIAAFIQY-------RGLYPTLAKLIVKNAPYESVEDVLNI............................. 57
6 -5.570d1ej5a_ a.68.1.1 (A:) Wiscott-Aldrich syndrome protein, WASP, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  10  14QNGFDVNNLDPDLRSLFSRAGISEAQLTDAETSKLIYDFIEDQGGLEAVRQEMRRQ............................................. 69
7 -5.540d2mqma_ d.58.7.0 (A:) automated matches {Norway rat (Rattus norvegicus) [TaxId: 10116]}  ali model 3D-neighbors follow..  12  1.QKISRPGDSDDSRSVNSVLLFTILNPIYSITTDVLYTICNPCGPVQRFRKNGVQAMVEFDSVQSAQRAKASLNGA......................... 78
8 -5.510d1v5ra1 d.82.4.1 (A:8-91) Growth-arrest-specific protein 2, GAS2 {Mouse (Mus musculus) [TaxId: 10090]}  ali model 3D-neighbors follow..  19  3...........LDDAVKRISEDPPCKCPTKFCVERLSQGRYRVGEKILFIRMLHNKHVMVRVGGGWETFAGYLLKHDPCRMLQISRVDGKTS......... 83
9 -5.460d1oo0b_ d.58.7.1 (B:) RNA-binding protein 8 {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}  ali model 3D-neighbors follow..  16  1..........PGPQRSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNI------HLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQV.. 83
10 -5.380d1dbwa_ c.23.1.1 (A:) Transcriptional regulatory protein FixJ, receiver domain {Rhizobium meliloti [TaxId: 382]}  ali model 3D-neighbors follow..  20  53...........TDLRMPDMSGVELLRNLGDLKINIPSIVITGHGDVPMAVEAMKAGAVDEKPFEDT-VIIEAIERASEH...................... 121

FFAS is supported by the NIH grant R01-GM087218-01
1 4 6 4 7 1   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Wooley JC, Godzik A. Probing metagenomics by rapid cluster analysis of very large datasets. PLoS ONE. 2008;3(10):e3375. Epub 2008 Oct 10.