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Query: d1noga_ a.25.2.2 (A:) Hypothetical protein Ta0546 {Thermoplasma acidophilum [TaxId: 2303]}, from SCOP207

Results of FFAS03 search in SCOP207
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst SPVVEVQGTIDELNSFIGYALVLSRWDDIRNDLFRIQNDLFVLGEDVSTGGKGRTVTREMIDYLEARVKEMKAEIGKIELFVVPGGSVESASLHMARAVSRRLERRIVAASKLTEINKNVLIYANRLSSILFMHALISNKRLNIPEKIWLast
1 -85.500d1noga_ a.25.2.2 (A:) Hypothetical protein Ta0546 {Thermoplasma acidophilum [TaxId: 2303]}  ali model 3D-neighbors  100  1SPVVEVQGTIDELNSFIGYALVLSRWDDIRNDLFRIQNDLFVLGEDVSTGGKGRTVTREMIDYLEARVKEMKAEIGKIELFVVPGGSVESASLHMARAVSRRLERRIVAASKLTEINKNVLIYANRLSSILFMHALISNKRLNIPEKIW 149
2 -79.600d2idxa_ a.25.2.0 (A:) automated matches {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  34  2DQVFEAVGTTDELSSAIGFALELVTEHTFAEELQKIQCTLQDVGSALATPCSSATFKAGPILELEQWIDKYTSQLPPLTAFILPSGGKISSALHFCRAVCRRAERRVVPLVQMGETDANVAKFLNRLSDYLFTLARYAAMKEGNQEKIY 160
3 -78.200d1wvta_ a.25.2.0 (A:) automated matches {Sulfolobus tokodaii [TaxId: 273063]}  ali model 3D-neighbors follow..  35  3SEIVKALGDLDELNSVLGVVSSLY--PELSEVIQKLQNDIFSISSEIAGF--DMNFSDEKVKGIEELITNYSKELEPLRNFVLPGGHIASSFLHLARAVCRRAERSVVTLLKESKAKEVHAKYLNRLSSLLFVLALVVNKRTNNPNVIW 147
4 -75.500d3ci3a1 a.25.2.0 (A:2-188) automated matches {Lactobacillus reuteri [TaxId: 1598]}  ali model 3D-neighbors follow..  32  24DPRVAAYGEVDELNSWVGYTKSLINTQVLSNELEEIQQLLFDCGHDLATPADDERKQEQPTVWLEEKIDNYTQVVPAVKKFILPGGTQLASALHVARTITRRAERQIVQLMREEQINQDVLIFINRLSDYFFAAARYANYLEQQPDMLY 179
5 -74.700d2g2da_ a.25.2.0 (A:) automated matches {Mycobacterium tuberculosis [TaxId: 1773]}  ali model 3D-neighbors follow..  34  2DARLVAYADCDEANAAIGAALALGPDTQITDVLRQIQNDLFDAGADLSTPIVELRIAQSYIDRLEGWCDAYNAGLPALKSFVLPGGSPLSALLHVARTVVRRAERSAWAAVDAEGVSVLPAKYLNRLSDLLFILSRVANPDGDVLWRPG 159
6 -7.840d1niga_ a.25.2.1 (A:) Hypothetical protein Ta1238 {Thermoplasma acidophilum [TaxId: 2303]}  ali model 3D-neighbors follow..  11  25.......SEIEAAEAYLGLAISE-ETREILDIIDTVYNSLSDPESKLNDFQEKRLNFTE-----EDWYDIKEK---------ANNGNRWSLYMFLARSAVDSAVYWSYRMKETEEVKEEMISKLLKAGYVIL................. 143
7 -7.450d1z0pa1 a.2.18.1 (A:1-77) Hypothetical protein SPy1572 {Streptococcus pyogenes [TaxId: 1314]}  ali model 3D-neighbors follow..  5..............................................................................KEFLKDFEDWVKTQIQVNQLAMATSQE-VAQEDGDERAKDAFIRYESKLDAYEFLLGKFDNYKNGKA.... 70
8 -6.560d3zxfa_ b.29.1.3 (A:) automated matches {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  17  9..................................................................................LPEGIRPGTVLRIRGLVPPNASRFHVNLLCGEEQGSDAALHFNRLDTSEVVFNSKEQGSWGREE... 73
9 -6.150d1j2ha_ a.7.8.1 (A:) ADP-ribosylation factor binding protein Gga1 {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  14  6..............................................IKEMVQEDQKRMEKISKRVNAIEEVNNNVKLLTEMV-QGGAAAGSSEDLMKELCERMRPTLFRLASDTEDNDEALAEILQANDNL-VINLYKQLVRGEE.... 111
10 -6.010d1t3ta3 d.284.1.2 (A:1-152) FGAM synthase PurL, PurS-like domain {Salmonella typhimurium [TaxId: 90371]}  ali model 3D-neighbors follow..  12  10...................ALSAFRINKLLARFQAANLQVHNIYAEYV--DLNAPLNDSEQAQLTRLLQYGPALVTPRPGTISPWSSKATDIAHNC-QQVDRLERGVAYYIEASTLTAEQWRQVDRMMETVF................. 140

FFAS is supported by the NIH grant R01-GM087218-01
1 4 5 9 0 4   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Friedberg I, Godzik A. Functional differentiation of proteins: implications for structural genomics. Structure. 2007 Apr;15(4):405-15.