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Query: d1peaa_ c.93.1.1 (A:) Amide receptor/negative regulator of the amidase operon (AmiC) {Pseudomonas aeruginosa [TaxId: 287]}, from SCOP207

Results of FFAS03 search in SCOP207
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst PLIGLLFSETGVTADIERSQRYGALLAVEQLNREGGVGGRPIETLSQDPGGDPDRYRLCAEDFIRNRGVRFLVGCYMSHTRKAVMPVVERADALLCYPTPYEGFEYSPNIVYGGPAPNQNSAPLAAYLIRHYGERVVFIGSDYIYPRESNHVMRHLYRQHGGTVLEEIYIPLYPSDDDLQRAVERIYQARADVVFSTVVGTGTAELYRAIARRYGDGRRPPIASLTTSEAEVAKMESDVAEGQVVVAPYFSSIDTPASRAFVQACHGFFPENATITAWAEAAYWQTLLLGRAAQAAGNWRVEDVQRHLYDIDIDAPQGPVRVERQNNHSRLSSRIAEIDARGVFQVRWQSPEPIRPDPYVVVHNLDDWLast
1 -106.000d1peaa_ c.93.1.1 (A:) Amide receptor/negative regulator of the amidase operon (AmiC) {Pseudomonas aeruginosa [TaxId: 287]}  ali model 3D-neighbors  100  1PLIGLLFSETGVTADIERSQRYGALLAVEQLNREGGVGGRPIETLSQDPGGDPDRYRLCAEDFIRNRGVRFLVGCYMSHTRKAVMPVVERADALLCYPTPYEGFEYSPNIVYGGPAPNQNSAPLAAYLIRHYGERVVFIGSDYIYPRESNHVMRHLYRQHGGTVLEEIYIPLYPSDDDLQRAVERIYQARADVVFSTVVGTGTAELYRAIARRYGDGRRPPIASLTTSEAEVAKMESDVAEGQVVVAPYFSSIDTPASRAFVQACHGFFPENATITAWAEAAYWQTLLLGRAAQAAGNWRVEDVQRHLYDIDIDAPQGPVRVERQNNHSRLSSRIAEIDARGVFQVRWQSPEPIRPDPYVVVHNLDDW 368
2 -70.900d3n0xa_ c.93.1.0 (A:) automated matches {Rhodopseudomonas palustris [TaxId: 1076]}  ali model 3D-neighbors follow..  15  4..IALIYGKTGPLEAYAKQTETGLMMGLEYATKGTMLDGRKIVVITKDDQSKPDLSKAALAEAYQDDGADIAIGTSSSAAALADLPVAEENKKILIVEPAVTGEKWNRYIFRTGRNSSQDAISNAVAIGKQ-GVTIATLAQDYAFGRDGVAAFKEALAKTGATLATEEYVPTT--TTDFTAVGQRLFDALKDIWVIWAGGGDPLTKLQDMDPKRYGIELSTGGNILPALAAYKRLPG----MEGATYYYYDIPKNPINEWLVTEHQKRFNA--PPDFFTAGGFSAAMAVVTAVQKAKSTDTEKLIAAMEGMEFDTPKGKMVFRKEDHQALQSMYHFKVKVDPAVA....................... 348
3 -69.800d3huta1 c.93.1.0 (A:40-384) automated matches {Rhodospirillum rubrum [TaxId: 269796]}  ali model 3D-neighbors follow..  20  4..LGYELPLTGANAAYGRVFQEAARLQLDRFNAAGGVGGRPVDILYADSRDDADQARTIARAFVDDPRVVGVLGDFSSTVSMAAGSIYGKEGMPQLSPTAAHPDKISPWQFRAITTPAFEGPNNAAWMIGDGFTSVAVIGVTTDWGLSSAQAFRKAFELRGGAVVVNE--EVPPGNRRFDDVIDEIEDEAPQAIYLAMAYEDAAPFLRALRARGS--ALPVYGSSALYSPKFIDLGGPAVEGVRLATAFVLGASDPVVVEFVSAYETLYGAI--PTLFAAHGYDAVGIMLAAVGRAGEVTRESLRDALAATDYAGVTGITRFDPETRETTKILTRLVV-REGDFRVI..................... 345
4 -66.500d4nqra_ c.93.1.0 (A:) automated matches {Anabaena variabilis [TaxId: 240292]}  ali model 3D-neighbors follow..  15  5..IGIALAQTSNVALLGQEQVAGAKIAEKYFNDKGGVNGTPIKLIFQDTAGDEAGTINAFQTLINKDKVVGIVGPTLSQQAFSANPIAERAKVPVVGPSNTAKGEIGDYVARVSAPVSVVAPNSVKAALKQNIKKVAVFAQNDAFSKSETEIFQQTVKDQGLELVTVQ--KFQTTDTDFQSQATNAINLKPDLVIISGLAADGGNLVRQLRELGY--QGAIIGGDGLNTSNVFAVCKALCDGVLIAQAYSPEYTGEINKAFRQAYVDQYKKE--PPQFSAQAFAAVQVYVESLKALDTKNKTELNKQLLTGKYNTPLGEISFTPIGEVVQKDFYVAQI-KMEKDGSQGK................... 359
5 -65.800d3ipca1 c.93.1.0 (A:2-348) automated matches {Agrobacterium tumefaciens [TaxId: 176299]}  ali model 3D-neighbors follow..  18  4..IAVGAPLTGPNAAFGAQIQKGAEQAAKDINAAGGINGEQIKIVLGDDVSDPKQGISVANKFV-ADGVKFVVGHANSGVSIPASEVYAENGILEITPAATNPVFTEWNTFRTCGRDDQQGGIAGKYLADHFKAKVAIIHDKTPYGQGLADETKKAANAAGVTEVMYE--GVNVGDKDFSALISKMKEAGVSIIYWGGLHTEAGLIIRQAADQGL--KAKLVSGDGIVSNELASIAGDAVEGTLNTFGPDPT-LRPENKELVEKFKAAGFN---PEAYTLYSYAAMQAIAGAAKAAGSVEPEKVAEALKKGSFPTALGEISFDEKGDPKLPGYVMYEWKPDGKFTYIQQ................... 347
6 -63.000d3td9a_ c.93.1.0 (A:) automated matches {Thermotoga maritima [TaxId: 2336]}  ali model 3D-neighbors follow..  16  4..IAVILPMTGGISAFGRMVWEGIQIAHEEK---PTVLGEEVELVLLDTRSEKTEAANAAARAIDKEKVLAIIGEVASAHSLAIAPIAEENKVPMVTPASTNPTQGRKFVSRVCFIDPFQGAAMAVFAYKNLGAKRVVVFTD-DYSVGLSNFFINKFTELGGQVKRVFF---RSGDQDFSAQLSVAMSFNPDAIYITGYYPEIALISRQARQLGF--TGYILAGDGADAPELIEIGGEAVEGLLFTTHYHPKAANPVAKKFVEVYKEKYGKE--PAALNALGYDAYMVLLDAIERAGSFDREKIAEEIRKTRFNGASGIINID-ENGDAIKSVVVNIV-KNGSVDFE----AVINPDDL......... 350
7 -62.900d4q6ba_ c.93.1.0 (A:) automated matches {Desulfitobacterium hafniense [TaxId: 272564]}  ali model 3D-neighbors follow..  19  5..IGVAWPFAS----LDDLFAEGLELAVQEINEQGGVQGRKLSLVKADDEAELEKGLAIAQAFADNAGIQAVIGHRNSFISIPAASIYDQAGLVMLSPASTSPDLTDIHVFRNIPSDQEIARQLAIYLAEQGHERMVIYYTDDSYGNGLANAFEDYARAQGITIVDRF--NYYGNLKDLERLYDKWQAFGMDGIFIAKTATGGTEFLVDAKSVGI--EVPLIAGNSWDATEDIENIGMTAEGLLVGSFFNPQRPDSRTQDFVEAFRREYGQP--PTSYAAAGYDAVILLAEALEKSDLTHPATLAQGLRDLGWEGVMGMHRFDGRGDDIGDLVVLKKM-KDGRFEYL..................... 346
8 -62.300d1z15a_ c.93.1.1 (A:) automated matches {Escherichia coli K-12 [TaxId: 83333]}  ali model 3D-neighbors follow..  14  5..VAVVGAMSGPVAQYGDQEFTGAEQAVADINAKGGIKGNKLQIVKYDDACDPKQAVAVANKVV-NDGIKYVIGHLCSSSTQPASDIYEDEGILMITPAATAPELTAQLILRTTGLDSDQGPTAAKYILEKVKQRIAIVHDKQQYGEGLARAVQDGLKKGNANVVFFD--GITAGEKDFSTLVARLKKENIDFVYYGGYHPEMGQILRQARAAGL--KTQFMGPEGVANVSLSNIAGESAEGLLVTKPKNYD-QVPANKPIVDAIKAKKQDP--SGAFVWTTYAALQSLQAGLNQSD--DPAEIAKYLKANSVDTVMGPLTWDEKGDLKGFEFGVFDW-HANGTATDAK................... 344
9 -61.600d4gnra_ c.93.1.0 (A:) automated matches {Streptococcus pneumoniae [TaxId: 637987]}  ali model 3D-neighbors follow..  16  5..IGFNFEESGSLAAYGTAEQKGAQLAVDEINAAGGIDGKQIEVVDKDNKSETAEAASVTTNLVTQSKVSAVVGPATSGATAAAVANATKAGVPLISPSATQDGKGQDYLFIGTFQDSFQGKIISNYVSEKLNAKKVVLYTD-DYAKGIAKSFRESY---KGEIVADE--TFVAGDTDFQAALTKMKGKDFDAIVVPGYYNEAGKIVNQARGMGI--DKPIVGGDGFNGEEFVQQATEKASNIYFISGFSTTVESAKAKAFLDAYRAKYNEE--PSTFAALAYDSVHLVANAAKGAK--NSGEIKDNLAKTKFEGVTGQTSFDA-DHNTVKTAYMMTM-NNGKVEAA----EVVKP............ 348
10 -58.700d3snra_ c.93.1.0 (A:) automated matches {Rhodopseudomonas palustris [TaxId: 316057]}  ali model 3D-neighbors follow..  15  7..VGISVTTTGPAAALGIPERNALEFVVKEIS------GHPIKIIVLDDGGDPTAATTNARRFVTESKADVIMGSSVTPPSVAISNVANEAQIPHIALAPLP-PERAKWSVVMPQPIPIMGKVLYEHMKKNNVKTVGYIGYSDSYGDLWFNDLKKQGEAMGLKIVGEE--RFARPDTSVAGQALKLVAANPDAILVGASGTAAALPQTTLRERGY--NGLIYQTHGAASMDFIRIAGKSAEGVLMASGPVTALTKKPGMALVKVYEEKYGPSS-RSQFAGHSYDAFKVLERVVPVALKKFREALREAFLTEKIAASQGVYNFTETDRYDDRSRILLTV-KNGKYVIVK.................... 359
11 -58.200d3sg0a_ c.93.1.0 (A:) automated matches {Rhodopseudomonas palustris [TaxId: 316058]}  ali model 3D-neighbors follow..  16  6..IGITMSASGPGAALGQPQSKTVAALPKEIG------GEKVTYFALDDESDPTKAAQNARKLLSEEKVDVLIGSSLTPVSLPLIDIAAEAKTPLMTMAAAAIDERRKWVYKVVPNDDIMAEAIGKYIAKTGAKKVGYIGFSDAYGEGYYKVLAAAAPKLGFELTTHE--VYARSDASVTGQVLKIIATKPDAVFIASAGTPAVLPQKALRERGF--KGAIYQTHGVATEEFIKLGGKDVEGAIFAGEAFSGAEDKVKARFVDAYKAANGGAA-PTIFGVHLWDSMTLVENAIPAALKAFRAAIRDQIEKSKLALNNGLSNMTPDNHNDERSAFLIEI-RDGAFRL...................... 360
12 -35.600d2h4aa1 c.93.1.1 (A:257-573) YraM C-terminal domain {Haemophilus influenzae [TaxId: 727]}  ali model 3D-neighbors follow..  12  3..IGLLLPLSGDGQILGTTIQSGFNDAKG---------NSTIPVQVFDTSMNS---VQDIIAQAKQAGIKTLVGPLLKQNLDVILDPAQIQGMDVLALNATPNSRAIPQLCYYGLSPEDEAESAANKMWNDGVRNPLVAMPQNDLGQRVGNAFNVRWQQLAGTDANIRY--YNLPADVTYFVQENNS--NTTALYAVASPTELAEMKGYLTNIVPNLAIYASSRASASATNTNTDFIAQMNGVFSDIPFFKDTNSPQYQKLAKSTGGEYQLMR----LYAMGADAWLLINQFNELR----------QVPGYRLSGLTGILSADT-NCNVERDMTWYQYQDGAIVPV...................... 317
13 -28.600d1jdpa_ c.93.1.1 (A:) Hormone binding domain of the atrial natriuretic peptide receptor {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  10  10..VLVLLPQDDSYLFSLTRVRPAIEYALRSVEGNGTPPGTRFQVAYEDSDCGNRALFSLVDRVARGAKPDLILGPVCEYAAAPVARLASHWDLPMLSAGALAAGFQHSHLTRVAPAYAKMGEMMLALFRHHHWSRAALVYSDDKLERNCYFTLEGVHEVFQEEGLHTSIYSFDETKDLDLEDIVRNIQASERVVIMCASSDTIRSIMLVAHRHGMTSGDYAFFNIELFNSSS-FEAKQAYSSLQTVT--LLRTVKPEFEKFSMEVKSSVEKQGYVNMFVEGFHDAILLYVLALHEVSKKDGGKIIQQTWNRTFEGIAGQVSIDANDRYGDFSVIAMTDVEAGTQEVIFGKEGRFEMRP.......... 401
14 -25.300d1dp4a_ c.93.1.1 (A:) Hormone binding domain of the atrial natriuretic peptide receptor {Norway rat (Rattus norvegicus) [TaxId: 10116]}  ali model 3D-neighbors follow..  10  5..VAVVLPLTNTSYPWSARVGPAVELALARVKARPDLLGWTVRMVLGSSENSDTAAPLAAVDLKWEHSPAVFLGPGCVYSAAPVGRFTAHWRVPLLTAGAPALGIGVALTTRTGPSHVKLGDFVTALHRRLGWEHQALVLYADRLGDDRPCFFIVEGLYMRVRERLNITVNHQEFVEGDPDHYPKLVRRKGRVIYICSSPDAFRNLMLLALNAGLTGEDYVFFHLDVFGQSLKSAQGQAFQAAKIIT--YKEPDNPEYLEFLKQLKLLA-EDGLKNIIPASFHDGLLLYVQAVTETTVTDGENITQRMWNRSFQGVTGYLKIDRNGDRDTDFSLWDMDPETGAFRVVLNYNGTSQELMAVSEHKL-YW 411
15 -24.600d5x2mb_ c.93.1.0 (B:) automated matches {Oryzias latipes [TaxId: 8090]}  ali model 3D-neighbors follow..  11  19.KLGGLFPICDSLNKDGLGRALVMKYAVEEINANSQLLGVKLGYKIYNTCRHSAVIVRPALSFLTETDMVAVIGPQSSEMVTVIGKLLGFFLMPQISFGATSDKFSDPSFFRTVPSDIRQVDAMVQLIKKFNWNWVAVVGSEEEYGQQGVQQFSKKAEDMGVCVAYQGLIPIYDDPKPAIQTIINIQTTEVKVVVVFSLVSPAVSFFEEVIKKNLTGVWIASSSWAISDKVYSLPNIDSIGTVIGFIDETETL--ELLSPFTEVLFKKIHEEESVQRTAFSVYAAVYTVAHALHKLTRLYPWKLLEVLKEFSVNISNTSLKFDQNGNPNIGYSVIQRIWENQSLSSV----GSYRSANLSINETLFKW 461
16 -23.300d1ewka_ c.93.1.1 (A:) Metabotropic glutamate receptor subtype 1 {Norway rat (Rattus norvegicus) [TaxId: 10116]}  ali model 3D-neighbors follow..  13  11.IIGALFSVGEIREQYGIQRVEAMFHTLDKINADPVLLNITLGSEIRDSCWHSSVALEQSIEFIRKKPIAGVIGPGSSSVAIQVQNLLQLFDIPQIAYSATSIDLSDKYFLRVVPSDTLQARAMLDIVKRYNWTYVSAVHTEGNYGESGMDAFKELAAQEGLCIAHSDKIYSNAGEKSFDRLLRKLRLPKARVVVCFCEGMTVRGLLSAMRRLGVVGEFSLIGSDGWADRDVIEGYEVEANGGITIKDYFLKLTNTRNPWFPEFWQHRFQENYVQDSKMGFVINAIYAMAHGLQNM-PIDGRKLLDFLIKSSFVGVSGEVWFDEKGDAPGRDIMNLQYTEANRYDYV..................... 460
17 -22.800d3h6ga_ c.93.1.0 (A:) automated matches {Norway rat (Rattus norvegicus) [TaxId: 10116]}  ali model 3D-neighbors follow..  10  6..FGGIFEYVE--SGPMGAEELAFRFAVNTINRNRTLLPNTLTYDTQKINLYDSFEASKKACDQLSLGVAAIFGPSHSSSANAVQSICNALGVPHIQTRWKHSDNKDSFYVSLYPDFSSLSRAILDLVQFFKWKTVTVVYDD----STGLIRLQELIKAPSRYNLRLKIRQLPADTKDAKPLLKEMKRGKEFHVIFDCSHEMAAGILKQALAMGMMTE--IFTTLDLFALDVEPYR-YSGVNMTGFRILNT--ENTQVSSIIEKWSMERLQAGFMTTDAALMYDAVHVVSVAVQQFPQMTVSRFMSLIKEAHWEGLTGRITFNKTNGLRTDDLDVISLKEEGLEKI...................... 370
18 -22.100d5x2ma_ c.93.1.0 (A:) automated matches {Oryzias latipes [TaxId: 8090]}  ali model 3D-neighbors follow..  10  11.LIGGLFNISKLFILPNYRRFQMMRFSVEEINNSSSLLNVSLGYQMFDHCSDIHSFPGIFKLLSVNDLAIGVVGPFTSTHALSIAPIFMTNLFPMVSYGCSGSVFSKPSFLRTVHSNKDVINAIVGIILNFNWRWVAFLYSDDDFGKDGLEQFKNKIEDSEICLAFYKAIN---VNTDYLQVFKQIEEQNIKVIVVFAPKVYAEAVVESAVQLNVTNKVWIADDGWSLNKKLPSMNGQNIGTVLGVA--QPVVTIPGFTDFIYSAISQTDGGDT-PSFSFPVYAAVYAIAHALHNT-TVHPHMILEELKKSNFTLLNQTVQFDENGDPKFGSLSVVFWNSSGNAEEVGSYHFQ-SSIHLSINKTKIKW 441
19 -21.500d3hsya_ c.93.1.1 (A:) Ionotropic glutamate receptor 2 (GluR2) amino-terminal domain (ATD) {Norway rat (Rattus norvegicus) [TaxId: 10116]}  ali model 3D-neighbors follow..  10  5..IGGLFPRG------ADQEYSAFRVGMVQFSTSE-----RLTPHIDNLEVANSFAVTNAFCSQFSRGVYAIFGFYDKKSVNTITSFCGTLHVSFITPSFPTDGTHPFVI----QMRPDLKGALLSLIEYYQWDKFAYLYDS-DRGLSTLQAVLDSAAEKKWQVTAINVGNINKKDETYRSLFQDLELKKERRVILDCERDKVNDIVDQVITIGKHVK--IIANLGFTDGDLLKIQFGGAN---VSGFQIVDYDDSLVSKFIERWSTLEEKEATIKYTSALTYDAVQVMTEAFRNLRKQRIEEIERALKQVQVEGLSGNIKFDQNGKRINYTINIMELKTNGPRKI-------------------GYW 365
20 -20.000d5kc8a_ c.93.1.0 (A:) automated matches {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  6..IGAIFDES------AKKDDEVFRTAVGDLNQNEEILTEKITFSVTFVDGNNPFQAVQEACELMNQGILALVSSIGCTSAGSLQSLADAMHIPHLFIQRSTASNRNDDYTLSVRPPVYLHDVILRVVTEYAWQKFIIFYDS-EYDIRGIQEFLDKVSQQGMDVALQKVENNINKMDTMRIEELNRYRDTLRRAILVMNPATAKSFITEVVETNLVAF--IIINEEINDVDVQELVRRSIGRLTIIRQTFPVPQN---SQRCFRGNHRISSTQNMEISNLYIYDTVLLLANAFHKKLEDRKRSMLETIKKGGVSGLTGELEFGENGGNPNVHFEILGTNYGEELG----------------VRKLGCW 396

FFAS is supported by the NIH grant R01-GM087218-01
1 4 6 8 3 9   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster

Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Godzik A. Fold recognition methods. Methods Biochem Anal. 2003;44:525-46. Review.