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Query: d1ry9a_ d.198.1.1 (A:) Surface presentation of antigens protein SpaK (Spa15) {Shigella flexneri [TaxId: 623]}, from SCOP207

Results of FFAS03 search in SCOP207
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MSNINLVQLVRDSLFTIGCPPSIITDLDSHSAITISLDSMPAINIALVNEQVMLWANFDAPSDVKLQSSAYNILNLMLMNFSYSINELVELHRSDEYLQLRVVIKDDYVHDGIVFAEILHEFYQRMEILNGVLLast
1 -71.300d1ry9a_ d.198.1.1 (A:) Surface presentation of antigens protein SpaK (Spa15) {Shigella flexneri [TaxId: 623]}  ali model 3D-neighbors  100  1MSNINLVQLVRDSLFTIGCPPSIITDLDSHSAITISLDSMPAINIALVNEQVMLWANFDAPSDVKLQSSAYNILNLMLMNFSYSINELVELHRSDEYLQLRVVIKDDYVHDGIVFAEILHEFYQRMEILNGVL 133
2 -70.500d2fm8a1 d.198.1.1 (A:1-134) Surface presentation of antigens protein SpaK (Spa15) {Salmonella typhimurium [TaxId: 90371]}  ali model 3D-neighbors follow..  32  1MQHLDIAELVRSALEVSGCDPSLIGGIDSHSTIVLDLFALPSICISVKDDDVWIWAQLGADSMVVLQQRAYEILMTIMEGCHFARGGQLLLGEQNGELTLKALVHPDFLSDGEKFSTALNGFYNYLEVFSRSL 133
3 -15.200d1jyoa_ d.198.1.1 (A:) Virulence effector SptP secretion chaperone SicP {Salmonella typhimurium [TaxId: 90371]}  ali model 3D-neighbors follow..  19  2.......QAHQDIIANIGEKLGLPLTFDDNNQCLLLLDSDIFTSIEAKDDIWLLNGMIIPLSPVCGDSIWRQIMVI---NGELAANNEGTLAYIDAAETLLLIHAITDLTNTYHIISQLESFVNQQEALKNIL 124
4 -15.000d1s28a1 d.198.1.1 (A:3-130) AvrPphF ORF1, chaperone of AvrPphF ORF2 {Pseudomonas syringae pv. phaseolicola [TaxId: 319]}  ali model 3D-neighbors follow..  6  1.MKNSFDRLIDGLAKDYGMPGFPEKK-HEHEVYCFEFKEVSIRIYQDKFKWVYFLSDIGVIDNLD----SNACQSLLRLNEFNLRTPFFTVGLNEKKDGVVHTRIPLLNLDNVEMRRVFEALLNLSGEVKKTF 127
5 -13.100d1xkpc1 d.198.1.1 (C:2-127) Chaperone protein YscB {Yersinia pestis [TaxId: 632]}  ali model 3D-neighbors follow..  14  2.......NLLKNLAASLGRKP----VADKQGVYRLTIDKH-LVMLAPHGSELVLRTPIDAPMLREGNNVNVTLLRSLMQALAWAKRYPQTLVLDDCGQLVLEARLRLQELDTHGLQEVINKQLALLEHLIPQL 124
6 -12.600d4gf3a_ d.198.1.1 (A:) automated matches {Yersinia pestis [TaxId: 632]}  ali model 3D-neighbors follow..  9  2....TYSSLLEEFATELGLEEI---ETNELGHGAVTIDKIWVVHLAPINKELVAFMRAGILTGQSQ------LYDILRKNLFSPLSGVIRCALDKDDHWLLWSQLNINDTSGTQLASVLTSLVDKAVTLSCEP 122
7 -12.000d3epua_ d.198.1.0 (A:) automated matches {Salmonella typhimurium [TaxId: 90371]}  ali model 3D-neighbors follow..  15  1.MYSRADRLLRQFSLKLNTDS----VFDENRLCSFIIDNRYRILLTSTNEYIMIYGFCGKPPDN------NNLAFEFLNAFAENNGPHLCYDNNSQSLLLALNFSLNES-SVEKLECEIEVVIRSMENLYHIL 126
8 -10.700d1jyaa_ d.198.1.1 (A:) YopE chaperone SycE {Yersinia pestis [TaxId: 632]}  ali model 3D-neighbors follow..  8  2....SFEQAITQLFQQLSLSIPD----TIEPVIGVKVGEFACHITEHPVGQILMFTLPSLDNNDEKET-----LLSHNIFSQDILKPILSWDEVGGHPVLWNRQPLNSL-DNNSLYTQLEMLVQGAERLQ... 117
9 -9.640d1xkpb1 d.198.1.1 (B:2-122) Chaperone protein SycN {Yersinia pestis [TaxId: 632]}  ali model 3D-neighbors follow..  7  1.......SWIEPIISHFCQDLGVPTSSPLSPLIQLEMAQSGTLQLEQHGATLTLW-----LARSLAWHRCEDAMVKALTLTAAQKSGALPLRLGESQLVLFVSLDERSL-TLPLLHQAFEQLLRLQQEVLA.. 121
10 -9.100d2plga1 d.198.1.2 (A:4-154) Uncharacterized protein Tll0839 {Synechococcus elongatus [TaxId: 32046]}  ali model 3D-neighbors follow..  7  20....NAVEIIETVISSLHQGDAPLVQTDSGKIWMFRYGSA-QLSGHTEEDFLTIWSPVLPLPVADELALYRKLLT-----LNWLTTFEAHFAIAEEQVQVVASRTLGGI-TAGEISRLITIVATLADDYDDAL 146
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Godzik A. cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences. Bioinformatics. 2006 May 26;