current user: public

If you have questions about the server, please let us know.

Query: d1st6a4 a.24.9.1 (A:372-488) Vinculin {Chicken (Gallus gallus) [TaxId: 9031]}, from SCOP207

Results of FFAS03 search in SCOP207
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .
# Score Template Links and tools%idFirst RKLEAMTNSKQAIAKKIDAAQNWLADPNGGSEGEEHIRGIMSEARKVAELCEEPKERDDILRSLGEISALTAKLSDLRRHGKGDSPEARALAKQIATSLQNLQSKTNRAVANTRPVKLast
1 -66.500d1st6a4 a.24.9.1 (A:372-488) Vinculin {Chicken (Gallus gallus) [TaxId: 9031]}  ali model 3D-neighbors  100  1RKLEAMTNSKQAIAKKIDAAQNWLADPNGGSEGEEHIRGIMSEARKVAELCEEPKERDDILRSLGEISALTAKLSDLRRHGKGDSPEARALAKQIATSLQNLQSKTNRAVANTRPVK 117
2 -49.700d1st6a3 a.24.9.1 (A:253-371) Vinculin {Chicken (Gallus gallus) [TaxId: 9031]}  ali model 3D-neighbors follow..  39  9KDTEAMKRALALIDSKMNQAKGWLRDPNAGDAGEQAIRQILDEAGKAGELCA-GKERREILGTCKTLGQMTDQLADLRARGQGATPMAMQKAQQVSQGLDLLTAKVENAA....... 119
3 -28.400d1st6a5 a.24.9.1 (A:489-646) Vinculin {Chicken (Gallus gallus) [TaxId: 9031]}  ali model 3D-neighbors follow..  31  1........AAVHLEGKIEQAQRWIDNPTVRGVGQAAIRGLVAEGRRLANVMM-GPYRQDLLAKCDRVDQLAAQLADLAARGEGESPQARAIAAQLQDSLKDLKARMQEAMTQEVS.. 108
4 -8.420d1qkra_ a.24.9.1 (A:) Vinculin {Chicken (Gallus gallus) [TaxId: 9031]}  ali model 3D-neighbors follow..  15  76..................................KASDEVTRLAKEVAKQCTDKRIRTNLLQVCERIPTISTQLATMLGRTNISDEESEQATEMLVHNAQNLMQSVKETVREAEAA. 164
5 -7.520d1quua1 a.7.1.1 (A:4-124) alpha-actinin {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  14  4RRLERLEHLAEKFRQKASTHETWAYGKEQILLQKDYESASLTEVRALLRKHEA---ESDLAAHQDRVEQIAAIAQELNELDYHDAVNVNDRCQKICDQWDRLGTLTQK......... 109
6 -7.290d1sj8a2 a.216.1.1 (A:658-782) Talin 1 {Mouse (Mus musculus) [TaxId: 10090]}  ali model 3D-neighbors follow..  10  20..................................SAAAALVLKAKSVAQRTEDSGLQTQVIAAATQCALSTSQLVACTKSSPVCQEQLVEAGRLVAKAVEGCVSASQAATEDGQLLR 108
7 -7.090d3rf3a1 a.24.9.1 (A:2-128) automated matches {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  47.................................QAAVSNLVRVGKETVQTTEDQILKRDMPPAFIKVENACTKLVQAAQM--QSDPYSVPARDYLIDGSRGILSGTSDLLL...... 123
8 -6.930d1l7ca1 a.24.9.1 (A:388-507) alpha-catenin {Mouse (Mus musculus) [TaxId: 10090]}  ali model 3D-neighbors follow..  11  37.................................REHANKLIEVANLACSISNNEEGVKLVRMSASQLEALCPQVINAALQSKLAQENMDLFKEQWEKQVRVLTDAVDDITS...... 120
9 -6.730d2q9qc_ a.278.1.1 (C:) automated matches {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  13  3................................CEKAME-LIRELHRAPEGQLPAFNEDGLRQVLEEMKALYEQNQSDVNEAKSGGRSDLIPTIKFRHCSLLRNRRCTVAYLYDRLLR 86
10 -6.600d3vrna3 d.93.1.0 (A:234-320) automated matches {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  14  13.......EVQERLQACRDKPGSYIFRPSCTRLGQWAIGYVSSDGS--------------ILQTIPANKPLSQVLLEGQKDGFYLYPDGKTHNPDLT..................... 87

FFAS is supported by the NIH grant R01-GM087218-01
1 4 5 9 0 4   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster

Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Friedberg I, Godzik A. Functional differentiation of proteins: implications for structural genomics. Structure. 2007 Apr;15(4):405-15.