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Query: d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus elongatus PCC 7942 [TaxId: 1140]}, from SCOP207

Results of FFAS03 search in SCOP207
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst QRSSNVRVSSGVVRLDEMCGGGFFKDSIILATGATGTGKTLLVSRFVENACANKERAILFAYEESRAQLLRNAYSWGMDFEEMERQNLLKIVCAYPESAGLEDHLQIIKSEINDFKPARIAIDSLSALARGVSNNAFRQFVIGVTGYAKQEEITGLFTNTSDQFMGAHSITDSHISTITDTIILLQYVEIRGEMSRAINVFKMRGSWHDKAIREFMISDKGPDIKDSFRNFERIISGSPTRILast
1 -90.200d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus elongatus PCC 7942 [TaxId: 1140]}  ali model 3D-neighbors  100  1QRSSNVRVSSGVVRLDEMCGGGFFKDSIILATGATGTGKTLLVSRFVENACANKERAILFAYEESRAQLLRNAYSWGMDFEEMERQNLLKIVCAYPESAGLEDHLQIIKSEINDFKPARIAIDSLSALARGVSNNAFRQFVIGVTGYAKQEEITGLFTNTSDQFMGAHSITDSHISTITDTIILLQYVEIRGEMSRAINVFKMRGSWHDKAIREFMISDKGPDIKDSFRNFERIISGSPTRI 242
2 -73.900d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus elongatus PCC 7942 [TaxId: 1140]}  ali model 3D-neighbors follow..  22  1EHQAIAKMRTMIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIEFDEPGVFVTFEETPQDIIKNARSFGWDLAKLVDEGKLFILDASPDGFDLSALIERINYAIQKYRARRVSIDSVTSVFQQYASSVVRRELFRLVARLKQIGATTVMTTER-IEEYGPIARYGVEEFVSDNVVILRNVLEGERRRRTLEILKLRGTSHMKGEYPFTITDHGINIFPLGAM............ 239
3 -33.100d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  16  1...EIIQITTGSKELDKLLQGGIETGSITEMFGEFRTGKTQICHTLAVTCQGGEGKAMYIDTEGRPERLLAVAERYGLSGSDVLDN---VAYARAFNTDHQTQLLYQASAMMVESRYALLIVDSATALELSARQMHLARFLRMLLRLADEFGVAVVITNQVVAQVDGAAMFAAIIAHASTTRLYLRKGRGE---TRICKIYDSPCLP--EAEAMFAINADGVG................... 238
4 -30.200d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  16  28RSMDVETISTGSLSLDIALAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDP--IYARKLGVDIDNLL-----------SQPDTGEQALEICDALARSGAVDVIVVDSVAALHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKNPETTTGGNALKFYASVRLDIRRIGAVKEGENRVKVVKNKIAAPFKQAEFQILYGEGI.................... 263
5 -25.600d1cr1a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]}  ali model 3D-neighbors follow..  14  11SEESVGLLFSGCTGINDKTL-GARGGEVIMVTSGSGMGKSTFVRQQALQGTAMGKKVGLAMLEESVEETAEDLGKFDQWFDELFGNDTFHLYDSFA-EAETDRLLAKLAYMRSGLGCDVIILDHISIVVSASGESDERKMIDNLMTKLKSTGVVLVVICHLKNPDKGDLRGSGALRQLSDTIIALRNQQGDMPNLVLVRILKCRFTGDTGIAGYMEYNKE...................... 268
6 -21.100d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  12  20................DYVLPNMVAGTVGALVSPGGAGKSMLALQLAAQIAGGPDPVIYLPAEDPPTAIHHRLHALGAHLQAVADGLLIQPLIGSLPNIMAPEWFDGLKRAAE--GRRLMVLDTLRRFHIEEENAPMAQVIGRMEAIAADTGCSIVFLMMGAGDQQQASRGSSVLVDNIRWQSYLSSMTSAERFFVRFGVSKANYGAPFADRW-FRRHDGGV-LKPAVLERQRKSKGVP... 274
7 -15.200d3l0ob2 c.37.1.0 (B:137-420) automated matches {Thermotoga maritima [TaxId: 2336]}  ali model 3D-neighbors follow..  12  16FILETDPKIYSTRLIDLFAPIG--KGQRGMIVAPPKAGKTTILKEIANGIAENHPDRIILLIDERPEEV-----------TDIRESTNAIVIAAPFDMPPDKQVLEMAKRLVEFNYDVVILLDSLTRLARVYNIVVPKRFFGAARNTREGGSLTIIATALVETGSKMDEVIFEEFKGTGNMELVLSRQLANKRIFPAINLLLS....................................... 231
8 -14.100d1vdza1 c.37.1.11 (A:60-113,A:191-439) A1 ATP synthase A subunit, central domain {Pyrococcus horikoshii [TaxId: 53953]}  ali model 3D-neighbors follow..  11  69KLPPEVPLITGQRVIDTFF---QAKGGTAAIPGPFGSGKTVTQHQLAKW--SDAQVVIYIGCGERGNEMTDVLEEFPKLKDPKTGKPLMERTVLIANTSNMPVAAREASIYTGITIAEALMADSTSRWAEALREISGRAGRVVTLGSDYRVGSVSVIGAVSPPGGDFSEPVVQNTLRVVKVFWALDADLARRRHFPAINWLTS....................................... 300
9 -13.300d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Cow (Bos taurus) [TaxId: 9913]}  ali model 3D-neighbors follow..  12  45MSVEQEILVTGIKVVDLLA---YAKGGKIGLFGGAGVGKTVLIMELINNVAAHGGYSVFAGVGERTRELYHEMIESGVINLKDATSKVALVYGQMNEPPGARARVALTGLTVAEYQDVLLFIDNIFRFTQAGSEVSALGTMQERITTTKKGSITSVQAIYVPADDLTDPAPATTFA-HLDATTVLSRAIAELGIYPAVDPLDS....................................... 272
10 -13.300d2jdia3 c.37.1.11 (A:95-379) Central domain of alpha subunit of F1 ATP synthase {Cow (Bos taurus) [TaxId: 9913]}  ali model 3D-neighbors follow..  18  45RISVREPMQTGIKAVDSLV---IGRGQRELIIGDRQTGKTSIAIDTIINQKRKKLYCIYVAIGQKRSTVAQLVKRL---TDADAMKYTIVVSATASDAAPLQYLAPYSGCSMGEYKHALIIYDDLSKQAVAYRQSRLLERAAKMNDAFGGGSLTALPVIETQAGDVSAYIPTNVIS-ITDGQIFLETELFYKGIRPAINVGLS....................................... 276
11 -13.200d2c61a1 c.37.1.0 (A:76-350) automated matches {Methanosarcina mazei [TaxId: 192952]}  ali model 3D-neighbors follow..  45RLPPKDFIQTGISTIDGTN---LVRGQKLPIFSASGLPHNEIALQIARQASVPGSEVVFAAMGITNEEAQYFMSDF---EKTGALERAVVFLNLADDPAVERIVTPRMALTAAEYMHVLVILTDITNYAEALRQTDLATLYERAGIVKGAKGSVTQIPILSMPGDDITHPIPDLSGYITEGQIVVARELHRKGIYPPINVLPS....................................... 271
12 -12.900d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  11  2..........................RHVFLTGPPGVGKTTLIHKASEVLKSSGVPVDGFYTEE----VRQGGRRIGFDVVTLSGTRGPLSRVGLEPPEQLALPVLRNADCSSGPGQRVCVIDEIGKMEL--FSQLFIQAVRQTLSTPGTIILGTIPVPKGKPLALVEEIRNRK-------VFNVTKENRNHLLPDIVTCVQ........................................ 185
13 -12.900d1w4ra1 c.37.1.24 (A:18-150) automated matches {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  12  1........................RGQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAKDTRYSSSFCTHDRNTMEALPACLLRDVAQEAL-------------------GVAVIGID----------EGQFFPDIVEFCEAMANAGKTVIVAALDGTFQRKPFGAILNLVPLAESVVKLT........................................................ 133
14 -12.800d1yksa1 c.37.1.14 (A:187-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]}  ali model 3D-neighbors follow..  10  2......................LKKGMTTVLDFHPGAGKTRFLPQILAECARRRLRTLVLALSEMKEAFHGLDVKFHTQAFSAHGSGREVIDAMC------ATLTYRMLEPTRVVNWEVIIMDEAHF-----LDPASIAARGWAAHRARANESATILMTATP................................................................................ 137
15 -12.700d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}  ali model 3D-neighbors follow..  12  3............................IIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGFRIITTEGKKKIFSSK-YGVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFS-----KKFRDLVRQIMHDPNVNVVATIPIRDVHPLVKEIRRLPGAV---LIELTPENRDVILEDILSLLE........................................ 177
16 -12.500d1nksa_ c.37.1.1 (A:) Adenylate kinase {Sulfolobus acidocaldarius [TaxId: 2285]}  ali model 3D-neighbors follow..  10  2..........................KIGIVTGIPGVGKSTVLAKVKEILDNQGINNKIINYGDFMLATALKLGY-------AKDRDEMRKLSVEKQKKLQIDAAKGIAEEARAGGEGYLFIDT-VIFLLEADPKIILSRQKRDTTRNRNDYSDESVILETINFARYAATASAVLAGSTVKVIVNVEGDPSIAANEIIRSMK........................................ 194
17 -12.500d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Norway rat (Rattus norvegicus) [TaxId: 10116]}  ali model 3D-neighbors follow..  12  4...........................LIVMVGLPARGKTYISKKLTRYLNFIGVPTREFNVGQYRRDMVKTYKSFEFFLPDNEEGLKIR-------KQCALAALNDVRKFLSEEGGHVAVFDATNTT---------RERRAMIFNFGEQNGYKTFFV.................................................................................... 118
18 -12.500d1ihua2 c.37.1.10 (A:308-583) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  13  1QRPDIPSLSALVDDIARN------EHGLIMLMGKGGVGKTTMAAAIAVRLADMGFDVHLTTSDDPHEETERYRQHVLETKGKELDEAGKRLLEEDLRSPCTEEIFQAFSRVIREAGKRFVVMDTLLLLDAIAKKMGEKGHFTTPMMLLQDPERTKVLLVTLPET.............................................................................. 194
19 -12.400d2vhja_ c.37.1.11 (A:) automated matches {Pseudomonas phage [TaxId: 161736]}  ali model 3D-neighbors follow..  15  122........................ASGMVIVTGKGNSGKTPLVHALG-EALGGKDKYATVRFGEPLSGYNTDF------------------------NVFVDDIARAML------QHRVIVIDSLKNVIGAAGGNTISRGAFDLLSMAASRGCVVIASLNPTSNDDK........................................................................... 241
20 -12.100d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker`s yeast (Saccharomyces cerevisiae) [TaxId: 4932]}  ali model 3D-neighbors follow..  11  2........................YQPSIIIAGPQNSGKTSLLTLLTT------------------DSVRPTVVSQEPLSAADYDGSGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSK------IKDALESEIQKVIERRKKSLNEVERKINEEDYAENTLDVLQST..................... 174
21 -12.000d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]}  ali model 3D-neighbors follow..  13  3..........................KIILTIGCPGSGKSTWAREFI----AKNPGFYNINRDDYRQSIMAHEERDEYKYTKKKEGIVTGMQF------------DTAKSILYGDSVKGVIISDTNL----------PERRLAWETFAKEYGWKVEHK.................................................................................... 110
22 -11.700d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}  ali model 3D-neighbors follow..  14  15GDPVTRVLDDGELLVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKI---AEESNFPFIKICSPDKMIGFSETAKC---------------------------QAMKKIFDDAYKSQLSCVVVDDIERLLDYVPSNLVLQALLVLLKKAPPQGRKLLIIGTTSRKD------------------VLQEMEMLNAFSTTIHVPNIATGEQLLEALE-NFKDKERTTIAQQVKGKKVWIGIKKLL 215
23 -11.700d1khta_ c.37.1.1 (A:) Adenylate kinase {Methanococcus voltae [TaxId: 2188]}  ali model 3D-neighbors follow..  10  1.........................NKVVVVTGVPGVGSTTSSQLAMDNLRKEGVNYKMVSFGSVMFEVAKEENL-------VSDRDQMRKMDPETQKRIQKMAGRKIAEMAKE---SPVAVDT...................................................................................................................... 89
24 -11.600d1g5ta_ c.37.1.11 (A:) ATP:corrinoid adenosyltransferase CobA {Salmonella typhimurium [TaxId: 90371]}  ali model 3D-neighbors follow..  16  2........................RGIIIVFTGN-GKGKTTAAFGTAARAVGHGKNVGVVQFIKGTWP-RNLLEPHGVEFQVMATGFTWETQNREADTAACMAVWQHGKRMLADPLLDMVVLDELTYMVAYLPLEEVISALNA-----RPGHQTVIITGRGCHRD---------ILDLADTVSELRPVK..................................................... 155
25 -11.400d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]}  ali model 3D-neighbors follow..  11  6...........................IISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDA-----RFNRADMKAELDRRYAAGDATFSHFSYEANELKELERVFREYGETGQGRTRTYV-----HDDAEAARTGVAPGNFTDWRDFDSDSHLLFYE---LHGAVVNSEVNIAGLADLKIGVVPVINLEWIQKIHRDRATRGYTTEAVTDVILRRMHAYVIVPQFSQTDINFQRVP... 209
26 -11.300d1c9ka_ c.37.1.11 (A:) Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU {Salmonella typhimurium [TaxId: 90371]}  ali model 3D-neighbors follow..  11  1...........................MILVTGGARSGKSRHAEAL----IGDAPQVLYIATDEMAARIQHHKDGRPAHWRTAECWRHLDTLITADLAPDDAILLECITTMVTNLLFALGGENDPEQWDYAAMERAIDDEIQILIAACQRCPAKVVLVTN.................................................................................. 134
27 -11.300d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Nematode (Caenorhabditis elegans) [TaxId: 6239]}  ali model 3D-neighbors follow..  13  25REYHVDRVIKKLDEMCD-------DSFFLFLHGRAGSGKSVIASQALSKSDQ--DSIVWLKDSGTAPKSTFDLFT---DILLMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDV----------------EETIRWAQELRLRCLVTTRDVEISNAASQTCEFIEV------------TSLEIDECYDFLEAYGMPMPVGEKEEDVLNK----------TIELSSGNPATL 225
28 -11.300d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]}  ali model 3D-neighbors follow..  13  36.....................KVFSGKNLLLAMPTAAGKTLLAEMAMVREAIKGGKSLYVALAGEKYESFKKWEKIGLRIGISTGDYESRDEHLGDCDIIVDSLIRNRASWIKAVS--CLVVDEIHLLDSEKRGATLEILVTKMRRMNKALRVIGLSAT................................................................................... 181
29 -11.100d1ihua1 c.37.1.10 (A:1-296) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  12  9..........................PYLFFTGKGGVGKTSISCATAIRLAEQGKRVLLVSTDPASNVGQVFSQTIGNTIQAIASVPGLSALEIDPQAAAFDEFTGLLTDASLLTRFDHIIFDT-HTIRLLQLPGAWSSFIDSNPEGASCLGPMAGLEKQREQYAY-------AVEALSDPLVARLQKSTLQEVARTHLELAAIG..................................... 226
30 -11.000d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]}  ali model 3D-neighbors follow..  14  3..........................KLYIITGPAGVGKSTTCKRL----AAQLDNSAYIEGDESDELLALTWKNITDLTVNFLLAQNDVVLDYIAFPDEAEALAQTVQAKVDDVEIRFIILWT...................................................................................................................... 110
31 -10.600d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker`s yeast (Saccharomyces cerevisiae) [TaxId: 4932]}  ali model 3D-neighbors follow..  19NKGSVMKLKNWLANWENSKKNSFKHARAAMLYGPPGIGKTTAAHLVAQE----GYDILEQNASDV-----RSKTLLNAGVKNALDNMSV-----------VGYFKHNEEAQNLNGKHFVIIMDEVDGM-----SGGDRGGVGQLAQFCRKTSTPLILICNERNLPKMRPFDRVCL------DIQFRRPDANSIKSRLMTIAIREKFKLDPNVIDRLIQTTRGDIRQVINLLSTISTT..... 233
32 -10.500d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]}  ali model 3D-neighbors follow..  10  21RRGEAEALAR----YLNRLLSGAGLSDVYGSIGRVGIGKTTLAKFTVKRVSEAAAK------GLTVKQAYVNAFNAPNLYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVLDEFQSMLSSPRIATLLRVHEEIPSRDGVNRIGFLLVASDVRALSYMREKIPQVESQIGFKLHLP------KSRELYTILEQR----ELGLRDTVWEPRHLELISDVYGEDKGGDGSARR. 255
33 -10.300d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]}  ali model 3D-neighbors follow..  18  1.......................MTTRMIILNGGSSAGKSGIVRCLQ---SVLPEPWLAFGVDS.................................................................................................................................................................................. 38
34 -10.300d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]}  ali model 3D-neighbors follow..  11  2.......................LGGNILLLSGHPGSGKSTIAEALA---NLPGVPKVHFHSDDLWGYIKHGRIDPWLPQSHQQNRMIMQIAADVAGRYAKEGY---------------VILDGV..................................................................................................................... 86
35 -10.200d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Pyrobaculum aerophilum [TaxId: 13773]}  ali model 3D-neighbors follow..  11  21REQQLQQLDI----LGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTRFVYINYRNFTAIIGEIARSLNIPFPR--------------RGLSRDEFLALLVEHLRERDLYMFLLDDAFNL-----APDILSTFIRLGQEADKLGAFRILVIVGHNDAVLNNLDPSTRGIMGKYVIRFS------TKDQIFDILLDR----KAGLAEGSYSEDILQMIADITGAQTPLDT..... 234
36 -9.970d1yrba2 c.37.1.10 (A:1-245) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}  ali model 3D-neighbors follow..  10  2...........................IVVFVGTAGSGKTTL-TGEFGRYLEDNYKVAYVNLDTGVKELVREFVTVEEIMREGYGPNGAIVESYDRLMEKFNEYLNKILR--LEKENDYVLIDTPGQMETFLFHEFGVRLMENLPYPLVVYISDPEILKKPNDYCFVRFFALLIDLRLGATTIPA......................................................... 163
37 -9.950d3iija1 c.37.1.1 (A:1-172) automated matches {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  12  6............................ILLTGTPGVGKTTLG-----------------------KELASKSGLKYINVGDLAREEQLYDGYDEEYDCPILDEDRVVDELDNQMREGGVIVDYHGCDFFPERWFHLRTDTNVLYERLETRGYNEKKLTDNIQCEIFQVLYEEATASYEEIVHQLPSNKPEELENNVDQILK........................................ 161
38 -9.930d3tqfa_ c.91.1.0 (A:) automated matches {Coxiella burnetii [TaxId: 777]}  ali model 3D-neighbors follow..  18  3.................TWHANFLVKMGVLITGEANIGKSELSLALIDRGHQ-CDDVIDLKQENN................................................................................................................................................................................. 53
39 -9.890d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]}  ali model 3D-neighbors follow..  14  5.................SLHGVLVDGVGVLITGDSGIGKSETALELIKRGHR-ADDNVEIREISK................................................................................................................................................................................. 55
40 -9.880d2gk6a1 c.37.1.19 (A:295-324,A:416-702) Upf1 {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  11  98......................VLQRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIDQLTEKIHQTGLKV--------VRLCAKSREAIDSPVSFLALHNQIRNMDSMPELQK---LQQLKDETGELSSADEKRYRALKRTAERELLMNADVICCTCVGAGDPRLAKMQFRSILIDESTQATEPECMVPVVL--------GAKQLILVGDHCQLGPVVMCKKAAKAGLSQSL 300
41 -9.790d4cr2i2 c.37.1.20 (I:165-436) Proteasome regulatory particle base subunit Rpt2, C-terminal domain {Baker`s yeast (Saccharomyces cerevisiae) [TaxId: 4932]}  ali model 3D-neighbors follow..  11  27IQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQT---SATFLRIVGSELIQKYLGDGPR----------------------------LCRQIFKVAGENAPSIVFIDEIDAISNSGGEREIQRTMLELLNQLDGFDDRGDVKVIMATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNLSEDVNLETLVTTKDDLS................... 224
42 -9.750d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]}  ali model 3D-neighbors follow..  26  3.......................PKGINILITGTPGTGKTSMAEMI----AAELDGFQHLEVGKLVKE.............................................................................................................................................................................. 43
43 -9.720d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]}  ali model 3D-neighbors follow..  18  5.................QIHGVLLEGVGVLLTGRSGIGKSECALDLINKNHL-GDDAIEIYRLGN................................................................................................................................................................................. 55
44 -9.670d2x8aa_ c.37.1.0 (A:) automated matches {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  12  1...........IGALEDIRE-GLVTPAGVLLAGPPGCGKTLLAKAVANE----GLNFISVKGPELLNMYVGES----------------------------ERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDREVNQLLTEMDGLEARQQVFIMAATNRPDIIDPAILRPGRLDKTLF.............................................................. 163
45 -9.340d1gkub1 c.37.1.16 (B:6-250) Helicase-like "domain" of reverse gyrase {Archaeoglobus fulgidus [TaxId: 2234]}  ali model 3D-neighbors follow..  14  50......................ILRKESFAATAPTGVGKTSFGLAMSLFLALKGKRCYVIFTSLLVIQAAETIRKYA-RIPKREKENFMQNLRNFKIVITTTQFLSKHYRELGHF--DFIFVDDVDAILKASKNVDFHYDLKTKSWVGEARGCLMVSTATAKKG.............................................................................. 212
46 -9.240d1yj5a2 c.37.1.1 (A:351-522) 5` polynucleotide kinase-3` phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}  ali model 3D-neighbors follow..  10  13........................NPEVVVAVGFPGAGKSTFIQEHLVSAVNRDTLGSWQRCVSSCQAALRQGKRVVIDNTNPDVPSRARYIQC-AKDAGVPCRCFNFCATIEQARHNNRFREMTDPSHAPVSDMVMFSYRKQFEPPTLAEGFLEILEIPFRLQEHLDPALQRLYRQFSEG............................................................. 172
47 -9.140d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]}  ali model 3D-neighbors follow..  13  2......ELRDRIDFLCKTILAIKTAGRLVLIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDDHIVERAKRYHT-QWDVEWLTHQLFRQLKASHQLTLPFYDHETHSKRTVYLSDSDMIMIEGVFLQR................................................................................................................. 137

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Pawlowski K, Jaroszewski L, Rychlewski L, Godzik A. Sensitive sequence comparison as protein function predictor. Pac Symp Biocomput. 2000;:42-53.