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Query: d1th8a1 d.122.1.3 (A:1-136) Anti-sigma factor spoIIab {Bacillus stearothermophilus [TaxId: 1422]}, from SCOP207

Results of FFAS03 search in SCOP207
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MRNEMHLQFSARSENESFARVTVAAFVAQLDPTMDELTEIKTVVSEAVTNAIIHGYNNDPNGIVSISVIIEDGVVHLTVRDEGVGIPDIEEARQPLFTTKPELERSGMGFTIMENFMDEVIVESEVNKGTTVYLKKLast
1 -72.000d1th8a1 d.122.1.3 (A:1-136) Anti-sigma factor spoIIab {Bacillus stearothermophilus [TaxId: 1422]}  ali model 3D-neighbors  100  1MRNEMHLQFSARSENESFARVTVAAFVAQLDPTMDELTEIKTVVSEAVTNAIIHGYNNDPNGIVSISVIIEDGVVHLTVRDEGVGIPDIEEARQPLFTTKPELERSGMGFTIMENFMDEVIVESEVNKGTTVYLKK 136
2 -30.800d1r62a_ d.122.1.3 (A:) Nitrogen regulation protein NtrB, C-terminal domain {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  14  6IHKVAERVVTLVSMELPDNVRLIRDYDPSLPELAHDPDQIEQVLLNIVRNALQA---GPEGGEIILRTRTARLAARIDVEDNGPGIPPQDTLFYPMVSGRE--GGTGLGLSLIDQHSGKIEFTSWPG-HTEFSVY. 151
3 -29.200d2c2aa2 d.122.1.3 (A:321-481) Sensor histidine kinase TM0853 {Thermotoga maritima [TaxId: 2336]}  ali model 3D-neighbors follow..  27  46...................................DPTRIRQVLLNLLNNGVKYSKKDAPDKYVKVILDEKDGGVLIIVEDNGIGIPDKDRIFEQFYSLTYEVPGTGLGLAITKEIVGRIWVESEVGKGSRFFVW. 155
4 -29.100d1bxda_ d.122.1.3 (A:) Histidine kinase domain of the osmosensor EnvZ {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  22  44...................................HPLSIKRAVANMVVNAARYG-----NGWIKVSSGTEPNRAWFQVEDDGPGIAQRKHLFQPFVDSARTISGTGLGLAIVQRIVGMLELGTSERGGLSIRAW. 146
5 -29.100d1ysra_ d.122.1.3 (A:) automated matches {Mycobacterium tuberculosis [TaxId: 1773]}  ali model 3D-neighbors follow..  19  41...................................LPAGLRLAVDNAIANAVKHG----GATLVQLSAVSSRAGVEIAIDDNGSGVPERQVVFERFSRGSTASHGSGLGLALVAQQAGTASLENSPLGGARLVLR. 143
6 -27.900d1id0a_ d.122.1.3 (A:) Histidine kinase PhoQ domain {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  15  6VAPLLDNLTSALNKVYQRKGVNISLDISPEISFVGEQNDFVEVMGNVLDNACKYC-----LEFVEISARQTDEHLYIVVEDDGPGIPKREVIFDRGQRVDTLRPGQGVGLAVAREITGKIVAGESMLGGARMEVI. 141
7 -27.800d2e0aa2 d.122.1.0 (A:188-386) automated matches {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  18  59.....................................SHLHHMLFELFKNAMRATVEHQENTPIEVIVVLGKEDLTIKISDRGGGVPLIDRLFSYTYSTAPTPVGFGYGLPISRLYAGDLNLYSLSGYGTDAIIY. 176
8 -26.600d4e01a2 d.122.1.4 (A:186-375) Branched-chain alpha-ketoacid dehydrogenase kinase (BCK) {Norway rat (Rattus norvegicus) [TaxId: 10116]}  ali model 3D-neighbors follow..  22  52.....................................MPLDYILPELLKNAMRATMESHLDPDVVITIANNDVDLIIRISDRGGGIADLDRVMDYHFTTAEASTGFGFGLPTSRAYAGSLQLQSLQGIGTDVYLR. 184
9 -20.800d2hkja3 d.122.1.2 (A:10-228) Topoisomerase VI-B subunit {Sulfolobus shibatae [TaxId: 2286]}  ali model 3D-neighbors follow..  16  18..................................NPARALYQTVRELIENSLDATDVHGILPNIKITIDLIDDAYKVNVVDNGIGIPEVPNAFGRVLVNRQTRGMYGLGVKAAVLYSKPIEIETSPNSKRIYTFK. 134
10 -20.300d1i58a_ d.122.1.3 (A:) Histidine kinase CheA {Thermotoga maritima [TaxId: 2336]}  ali model 3D-neighbors follow..  27  28...................EVNFIMRGEDTELDRTFVEEIGEPLLHLLRNAIDHGIEPPPIGTLILSARHEGNNVVIEVEDDGRGIDKLNFLFVPGFSTKEEVSGRGVGMDVVKSLNGSISIESEKDKGTKVTIR. 185
11 -14.400d1s14a_ d.122.1.2 (A:) Topoisomerase IV subunit B {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  13  6.......................................PNHLGQEVIDNSVDEALAGHAK-RVDVILHADQS---LEVIDDGRGMP-----VDIHPEEGVPAVELILCISVVNALSKRVEVNVRRDG........ 85
12 -14.400d1q1da1 d.122.1.2 (A:7-245) DNA topoisomerase II {Baker`s yeast (Saccharomyces cerevisiae) [TaxId: 4932]}  ali model 3D-neighbors follow..  17  47................................NVTIVPGLFKIFDEILVNAADNKVRDPSMKRIDVNIHAEEH--TIEVKNDGKGIPIEIHNKENIYIPKVTGGRNGYGAKLCNIFSTEFILETADLN........ 158
13 -11.300d4k4oa1 d.122.1.0 (A:18-224) automated matches {Enterococcus faecalis [TaxId: 226185]}  ali model 3D-neighbors follow..  20  21.......................................LHHLVWEIVDNSIDEALAGFAK-SIQVIIEPDDS---ITVIDDGRGIPVGIQAKTGRPAVKVSGGLHGVGSSVVNALSTSLDVRVYKDG........ 123
14 -10.200d3t0ha_ d.122.1.1 (A:) automated matches {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  21  27........................................EIFLRELISNSLTDPSKLDSGKELHINLIPNKQDRTLTIVDTGIGMTKADLINNLGTIAKSGTKA-GVGFYSAYLVAEKVTVITKMGRGTKVIL.. 173
15 -10.000d3cwva1 d.122.1.0 (A:8-206) automated matches {Myxococcus xanthus [TaxId: 246197]}  ali model 3D-neighbors follow..  23.......................................LHHLVYFLLDVAYEEARRGECR-DVVLEVGGDGS---IALFCTSRTVTAENLVRVAT-RPPGDGWGWDSMLVVSLALSSRYQVDIWAD......... 111
16 -9.300d1y7ra1 d.108.1.1 (A:1-133) Hypothetical protein SA2161 {Staphylococcus aureus [TaxId: 1280]}  ali model 3D-neighbors follow..  16  30..........................................AAEKGLPNALFTVTLYDKDRLIGMGRVIGDGGTVFQIVD---------------IAVLKSYQGQAYGSLIMEHIMKYIKNVSVESVYVSLIADY 108
17 -9.200d1h7sa2 d.122.1.2 (A:29-231) DNA mismatch repair protein PMS2 {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  25  2..................................QVVLSLSTAVKELVENSL-------DAGATNIDLKLKDYGVDIEVSDNGCGVENFEGLTLKHHTSK------------IQEFADLTQVETFGFRGEAL.... 83
18 -9.190d1n12a_ b.2.3.2 (A:) PapE pilus subunit {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  5...................................TVSNTTVDWQDVEIQTLSQNGNHEKEFTVNMRCPYNLGTMKVTITATNTYNNA------ILVQNTSNTSSDGLLVYLYNSNAGNIGTAITLGTPFTP.... 95

FFAS is supported by the NIH grant R01-GM087218-01
1 4 6 1 4 9   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Friedberg I, Nika K, Tautz L, Saito K, Cerignoli F, Friedberg I, Godzik A, Mustelin T. Identification and characterization of DUSP27, a novel dual-specific protein phosphatase. FEBS Lett. 2007 May 29;581(13):2527-33. Epub 2007 Apr 30.