Scheduled maintenance will begin on May 30th, 2025. Server will be temporarily unavailable — learn more.
current user: public

If you have questions about the server, please let us know.

Query: d1tz9a1 c.1.15.6 (A:2-353) Mannonate dehydratase UxuA {Enterococcus faecalis (Streptococcus faecalis) [TaxId: 1351]}, from SCOP207

Results of FFAS03 search in SCOP207
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130    .  140    .  150    .  160    .  170    .  180    .  190    .  200    .  210    .  220    .  230    .  240    .  250    .  260    .  270    .  280    .  290    .  300    .  310    .  320    .  330    .  340    .  350
# Score Template Links and tools%idFirst KWGFRWYGAAGDAIPLKHIRQIPGITGVVGTLLNKLPGDVWTVAEIQALKQSVEQEGLALLGIESVAIHDAIKAGTDQRDHYIDNYRQTLRNLGKCGISLVCYSFKPIFGWAKTDLAYENEDGSLSLLFDQAVVENMQPEDMYQLIHSQSKGFRLPGWEEERLQQFQELKAMYAGVTEEDLVENLRYFLERVIPVCEEENIKMGIHPDDPPWEIFGLPRITKNLADLKRILSLVDSPANGITFCTGSLGADPTNDLPTMIREIGHRINFVHFRNVKYLGEHRFEETAHPSVAGSLDMAELMQALVDVGYEGVIRPDHGRAIWDEKAMPGYGLYDRAMGLTYIQGLYEATKAKLast
1 -103.000d1tz9a1 c.1.15.6 (A:2-353) Mannonate dehydratase UxuA {Enterococcus faecalis (Streptococcus faecalis) [TaxId: 1351]}  ali model 3D-neighbors  100  1KWGFRWYGAAGDAIPLKHIRQIPGITGVVGTLLNKLPGDVWTVAEIQALKQSVEQEGLALLGIESVAIHDAIKAGTDQRDHYIDNYRQTLRNLGKCGISLVCYSFKPIFGWAKTDLAYENEDGSLSLLFDQAVVENMQPEDMYQLIHSQSKGFRLPGWEEERLQQFQELKAMYAGVTEEDLVENLRYFLERVIPVCEEENIKMGIHPDDPPWEIFGLPRITKNLADLKRILSLVDSPANGITFCTGSLGADPTNDLPTMIREIGHRINFVHFRNVKYLGEHRFEETAHPSVAGSLDMAELMQALVDVGYEGVIRPDHGRAIWDEKAMPGYGLYDRAMGLTYIQGLYEATKAK 352
2 -38.400d1k77a1 c.1.15.5 (A:1-258) Hypothetical protein YgbM (EC1530) {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  11  13..............................................................................TEVPFIERFAAARKAGFDAVEFLFPYNYSTLQIQKQLEQNHLTLALFNTAINAGEWGLSALPGREHEAHADIDLALEYALALNCEQVHVMAGVVPAGEDAERYRAVFIDNIRYAADRFAPHGKRILVEALSPGVK----HYLFSSQYQALAIVEEVARDNVFIQLDTFHAQKVDG-NLTHLIRDYAGKYAHVQIAGLPDRHE---------PDDGEINYPWLFRLFDEVGYQGWIGCEYKPRGLTEE------------GLGWFDAW....... 257
3 -37.000d1i60a_ c.1.15.4 (A:) Hypothetical protein IolI {Bacillus subtilis [TaxId: 1423]}  ali model 3D-neighbors follow..  4......................................................................CFNEATTLENSNLKLDLELCEKHGYDYIEIRTMDYLKDHSLDDLAEYFQTHHIKPLALNALVFFNNRDEKGHNEIITEFKGMMETCKTLGVKYVVAV-PLVTEQKIVKEEIKKSSVDVLTELSDIAEPYGVKIALEFVGHP------QCTVNTFEQAYEIVNTVNRDNVGLVLDSFHFHA-MGSNIESLKQADGKKIFIYHIDDTEDFPIGFLTDE-VWPGQGAIDLDAHLSALKEIGFSDVVSVE----LFRPEYYKLTAEEAIQTAKKTTVDVVSKYFS. 277
4 -35.000d1yx1a1 c.1.15.7 (A:3-252) Hypothetical protein PA2260 {Pseudomonas aeruginosa [TaxId: 287]}  ali model 3D-neighbors follow..  10  17..............................................................................RSRGQASFLPLLAMAGAQRVELREELFAGPPDTEALTAAIQLQGLECVFSSPLELWREDG-----QLNPELEPTLRRAEACGAGWLKVSLGLLPEQ------------PDLAALGRRLARHGLQLLVENDQ--------TPQGGRIEVLERFFRLAERQQLAMTFDIGNWR-WQEQAADEAALRLGRYVGYVHCKAVIRNRDGK----LVAVPPSAADLQYWQRLLQHFPEGVARAIEY-------PLQGDDLLSLSRRHIAALARLGQ..... 250
5 -33.100d4hgxa_ c.1.15.4 (A:) Putative cytoplasmic protein STM4435 {Salmonella typhimurium [TaxId: 90371]}  ali model 3D-neighbors follow..  17...............................................................................GLSIEAFFRLVKRLEFNKVELRNDMPSGSVTDDLNYNQVRNLAEKYGLEIVTINAVYPFNQLTEEVVKKTEGLLRDAQGVGARALVLCP-----LNDGTIVPPEVTVEAIKRLSDLFARYDIQGLVEPLGFR------VSSLRSAVWAQQLIREAGSPFKVLLDTFHHHLY-EEAEKEFASRIDISAIGLVHLSGVEDTRPTE-EQRIMLSEKDVMQNYQQVQRLENMGYRGIYAFEPFSSQLASWSEA-----------EIEEQINRSVS.. 267
6 -31.900d1muwa_ c.1.15.3 (A:) D-xylose isomerase {Streptomyces olivochromogenes [TaxId: 1963]}  ali model 3D-neighbors follow..  11  36............VETVQRLAEL-GAHGVTFHDDDLIPFGS-RESHIKRFRQALDATGMTVPMATTNLFTHPTANDRDVRRYALRKTIRNIDLAVELGAKTYVA---------------------------------------------------------------REGAESGAAKDVRVALDRMKEAFDLLGEYVTSQGYDIRFAIEPKPNEPRG-DILLPTVGHALAFIERLERPEYGVNPEVGHEQ-MAGLNFPHGIAQAAGKLFHIDLNG----QSGIKYDQDLRFGAGDLRAFWLVDLLESAGYEGPRHFDFKPPRTEDIDGVWASAAGCMRNYLILKERAAAFRAD 322
7 -27.400d2g0wa1 c.1.15.4 (A:10-284) Hypothetical protein Lmo2234 {Listeria monocytogenes [TaxId: 1639]}  ali model 3D-neighbors follow..  10  18............PKRVKVAAE-NGFDGIGLRAENYVD----AGLTDEDMLRILDEHNMKVTEVEYITQWGTAEDRTAEQQKKEQTTFHMARLFGVKHINCGL--------------------------------------------------------------------------LEKIPEEQIIVALGELCDRAE--ELIIGLEFMP---------SGVADLQAAWRVAEACGRDNAQLICDTWHWA-RANQTAESIKNVPADRIVSIQLCDVHETPYKELREE-LAPGEGYGDTVGFAKILKEHGVNPVMGVE----VISDSMVATGLEYAALKVYNATKKVLDEAWPE 271
8 -22.000d5nhma_ c.1.15.0 (A:) automated matches {Piromyces sp. [TaxId: 73868]}  ali model 3D-neighbors follow..  84............DAGFEIMQKL-GIPYYCFHDVDLVSEGN-LKAVVAYLKEKQKETGIKLLWSTANVFGHKTNPDFDVVARAIVQIKNAIDAGIELGAENYVF---------------------------------------------------------------REGYMSLLNTDQKREKEHMATMLTMARDYARSKGGTFLIEPKPME----TKHQYDVDTETAIGFLKAHNDKDFKVNIEVNHAT-LAGHTFEHELACAVDAGMLGSIDANRGDYQNGW-----DTDQFPIDQYELVQAWGGGFVTGGTNFDAKTR--RNSTDLEDIIIAHVSGMDAMARALENAAK. 372
9 -13.600d1d8wa_ c.1.15.2 (A:) L-rhamnose isomerase {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  5...........................................QAWELAKQRFAAVGIDVEEALRQLDRLPVSMNYPGKARNASELRADLEQASDTPVSRDQIKPEHFKNWVEWAKANQLGLDFNPSCFSHPTLSHADDSIRQFWIDHCKASRRVSAYFGEQLGTPIPDGMKDITVDRLAPRQRLLAALDEVISEKLNPAHIDAVES-----KLFGIGAESYTVGSNEFYMGYATSRQTALCLDAGHFHPTEVISDKISAAMLYVPQLLLHVSRPVRWDSDHVVLL-------DDETQAIASEIVRHDLFDRVHIGLDFFDASINRIAAWVIGTRNMKKALLRALLEPTAE. 357
10 -12.500d4hnoa1 c.1.15.0 (A:2-285) automated matches {Thermotoga maritima [TaxId: 243274]}  ali model 3D-neighbors follow..  12  19.....................................................DTVNIGGNSFQIFPHNARSWSAKLPSDEAATKFKREMKKHGIDWENAFCHSG------------------------YLINLASPKDDIWQKSVELLKKEVEICRKLGIRYLNIHP--GSHLGTGEEEGIDRIVRGLNEVLN--NTEGVVILLENVSQKGGNIG-----YKLEQLKKIRDLVQRDRVAITYDTCHGFDSGKEGVEALLNEIEERLKMIHLNDSKYP--GAAKDRHERIGSGFIGEEGFAVFFSFKEIQEVPWILETPGGNEEH----------AEDIKKVFEIIEKFGIE 284
11 -12.200d3aala_ c.1.15.1 (A:) automated matches {Geobacillus kaustophilus [TaxId: 1462]}  ali model 3D-neighbors follow..  8...........................................................................SMSGKKMLLAASEEAASYGANTFMIYTGAPQNIEAGRQHMQAHGIEEIVVHAPYIINIGNTTNLDTFSLGVDFLRAEIERTEAIGAKQLVLHP--GAHVGAGVEAGLRQIIRGLNEVLT--REQNVQIALETMAGKGSECG-----RTFEELAYIIDGVAYNKLSVCFDTCHTHDAGVNDFDGVLEEFDGRLKVLHINDSKNP--GSRKDRHENIGFGHIGFAALNYIVHHPQLEDIKILE----TPYVGEDKNNKKPPYKHEIAMLRAQSFD.... 286
12 -10.800d2nqha_ c.1.15.1 (A:) Endonuclease IV {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  14..................................................................................LANAAIRAAEIDATAFALFTKNQRTIDEFKAACEKYHYTSAQILPHDSYLINLGHPVTEALEKSRDAFIDEMQRCEQLGLSLLNFHPGSHLMQISEEDCLARIAESINIALD--KTQGVTAVIENTAGQGSNLG-----FKFEHLAAIIDGVDKSRVGVCIDTCHAFAAGPAECEKTFADFAKYLRGMHLNDAKST--GSRVDRHHSLGEGNIGHDAFRWIMQDDRFDGIPLILQTINPDIW-----------AEEIAWLKAQ....... 278
13 -9.820d3aama_ c.1.15.0 (A:) automated matches {Thermus thermophilus HB8 [TaxId: 300852]}  ali model 3D-neighbors follow..  11  8....................SIAGKKGVAGAVEEAKSPRSWSPAEVEAFRALREASGGL-PAVIHASYLVNLGAEGELWEKSVASLADDLEKAALLGVEYVVVH-----------------------------------------------------------------PGSGRPERVKEGALKALRLAG------VRSRPVLLVEN------TAGGGEKVGA--RFEELAWLVADTPLQVCLDTCHAYAAGAEDPLGVLDALDERVPVVHLNDSVGG--GSRVDHHAHLLQGKIG-EGLKRVFLDPRLKDRVFILETPRGPEED----------AWNLRVFRAWLEE.... 268

FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 1 0 7   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster

Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Friedberg I, Godzik A. Fragnostic: walking through protein structure space. Nucleic Acids Res. 2005 Jul 1;33(Web Server issue):W249-51.