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Query: d1vjka1 d.15.3.1 (A:2-88) Molybdopterin synthase subunit MoaD {Pyrococcus furiosus [TaxId: 2261]}, from SCOP207

Results of FFAS03 search in SCOP207
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst VKVKVKYFARFRQLAGVDEEEIELPEGARVRDLIEEIKKRHEKFKEEVFGEGYDEDADVNIAVNGRYVSWDEELKDGDVVGVFPPVSLast
1 -61.900d1vjka1 d.15.3.1 (A:2-88) Molybdopterin synthase subunit MoaD {Pyrococcus furiosus [TaxId: 2261]}  ali model 3D-neighbors  100  1VKVKVKYFARFRQLAGVDEEEIELPEGARVRDLIEEIKKRHEKFKEEVFGEGYDEDADVNIAVNGRYVSWDEELKDGDVVGVFPPVS 87
2 -47.800d1fm0d_ d.15.3.1 (D:) Molybdopterin synthase subunit MoaD {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  33  2..IKVLFFAQVRELVGTDATEVAAD-FPTVEALRQHMAAQSDRWALALED------GKLLAAVNQTLVSFDHPLTDGDEVAFFPPVT 79
3 -33.500d2k9xa_ d.15.3.0 (A:) automated matches {Trypanosome (Trypanosoma brucei) [TaxId: 5691]}  ali model 3D-neighbors follow..  18  5NHITVQFAGGCELLFAKQQLDGVVPTGTNLNGLVQLLKTNYVKERPDLLQTGQTLRPGILVLVNSCDAEMDYVLNDGDTVEFISTLH 100
4 -32.800d2qjla_ d.15.3.0 (A:) automated matches {Baker`s yeast (Saccharomyces cerevisiae) [TaxId: 4932]}  ali model 3D-neighbors follow..  20  2VNVKVEFLGGLDAIFGKQKIKMDKEDPVTVGDLIDHIVSTMINNPNSIFIEDDSIRPGIITLINDTDWEKDYILEDGDIISFTSTLH 97
5 -31.400d1v8ca1 d.15.3.1 (A:1-87) MoaD-related protein, N-terminal domain {Thermus thermophilus [TaxId: 274]}  ali model 3D-neighbors follow..  30  2...KVNLYATFRDLTGKSQLELP---GATVGEVLENLVRAYPALKEELFEGEG-LAERVSVFLEGRDVGLSTPLSPGATLDLFPPVA 85
6 -25.400d5ldab_ d.15.3.2 (B:) Hypothetical protein PF1061 {Pyrococcus furiosus [TaxId: 2261]}  ali model 3D-neighbors follow..  38  1.........KVKVIGRNIEKEIEWREGMKVRDILRAVGFN---------------TESAIAKVNGKVVLEDDEVKDGDFVEVIPVVS 63
7 -20.200d1ryja_ d.15.3.2 (A:) Hypothetical protein MTH1743 {Methanobacterium thermoautotrophicum [TaxId: 145262]}  ali model 3D-neighbors follow..  22  1MVIGMKFTVITDD----GKKILESGAPRRIKDVLGEL---------------EIPIETVVVKKNGQIVIDEEEIFDGDIIEVIRVIY 68
8 -15.800d2hj1a1 d.15.3.4 (A:11-87) Hypothetical protein HI0395 {Haemophilus influenzae [TaxId: 727]}  ali model 3D-neighbors follow..  18  3INIEIAYAFPERYYL----KSFQVDEGITVQTAITQILSQFPEID----------LSTNKIGIFSRPIKLTDVLKEGDRIEIYRPL. 76
9 -10.800d1zud2_ d.15.3.2 (2:) Thiamin biosynthesis sulfur carrier protein ThiS {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  22  5.................NDQAMQCAAGQTVHELLEQLDQR---------------QAGAALAINQQIVPREHIVQDGDQILLFQVIA 63
10 -8.750d4x57b_ d.15.1.0 (B:) automated matches {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}  ali model 3D-neighbors follow..  12  6IDIKFRLYD------GSDIGPFRYSAASTVDFLKQRVVSDWPK-----KTVVPKGINEVKLISSGKILENNKTVGQ........... 71

FFAS is supported by the NIH grant R01-GM087218-01
1 3 7 8 0 7   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Sasin JM, Godzik A, Bujnicki JM. SURF'S UP! - protein classification by surface comparisons. J Biosci. 2007 Jan;32(1):97-100.