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Query: d1xioa_ f.13.1.1 (A:) Sensory rhodopsin {Nostoc sp. PCC 7120 [TaxId: 103690]}, from SCOP207

Results of FFAS03 search in SCOP207
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MNLESLLHWIYVAGMTIGALHFWSLSRNPRGVPQYEYLVAMFIPIWSGLAYMAMAIDQGKVEAAGQIAHYARYIDWMVTTPLLLLSLSWTAMQFIKKDWTLIGFLMSTQIVVITSGLIADLSERDWVRYLWYICGVCAFLIILWGIWNPLRAKTRTQSSELANLYDKLVTYFTVLWIGYPIVWIIGPSGFGWINQTIDTFLFCLLPFFSKVGFSFLDLHGLRNLNDLast
1 -94.500d1xioa_ f.13.1.1 (A:) Sensory rhodopsin {Nostoc sp. PCC 7120 [TaxId: 103690]}  ali model 3D-neighbors  100  1MNLESLLHWIYVAGMTIGALHFWSLSRNPRGVPQYEYLVAMFIPIWSGLAYMAMAIDQGKVEAAGQIAHYARYIDWMVTTPLLLLSLSWTAMQFIKKDWTLIGFLMSTQIVVITSGLIADLSERDWVRYLWYICGVCAFLIILWGIWNPLRAKTRTQSSELANLYDKLVTYFTVLWIGYPIVWIIGPSGFGWINQTIDTFLFCLLPFFSKVGFSFLDLHGLRNLND 226
2 -85.400d4hyja_ f.13.1.0 (A:) automated matches {Exiguobacterium sibiricum [TaxId: 332410]}  ali model 3D-neighbors follow..  19  7.LATQYMFWVGFVGMAAGTLYFLVERNSLAPEYRSTATVAALVTFVAAIHYYFMKDAVGTSGLIDGFPTEIRYIDWLVTTPLLLVKFPLLLGLKGRLGRPLLTKLVIADVIMIVGGYIGESSINTQLGLWSYLIGCFAWIYIIYLLFTNVTKAAENKPAPIRDALLKMRLFILIGWAIYPIGYAVTLFAPGVEIQLVRELIYNFADLTNKVGFGLIAFFAVKTMSS 239
3 -85.300d3qapa_ f.13.1.1 (A:) Sensory rhodopsin II {Natronobacterium pharaonis [TaxId: 2257]}  ali model 3D-neighbors follow..  29  1MVGLTTLFWLGAIGMLVGTLAFAWAGRDAGSGERRYYVTLVGISGIAAVAYVVMALGVGWVPVAERTVFAPRYIDWILTTPLIVYFLGLLAGLDSRE----FGIVITLNTVVMLAGFAGAMVPG-IERYALFGMGAVAFLGLVYYLVGPMTESASQRSSGIKSLYVRLRNLTVILWAIYPFIWLLGPPGVALLTPTVDVALIVYLDLVTKVGFGFIALDAAATL.. 219
4 -83.800d5g28a_ f.13.1.0 (A:) automated matches {Nonlabens marinus [TaxId: 1454201]}  ali model 3D-neighbors follow..  17  15.EFIDHLLTMGVGVHFAALIFFLVVSQFVAPKYRIATALSCIVMVSAGLILNSQAVMWTDAYADLTFSNGYRYVNWMATIPCLLLQLLIVLNLKGKELFSTATWLILAAWGMIITGYVGQLYEVDAQLMIWGAVSTAFFVVMNWIVGTKIFKNRATMLGGTDSTITKVFWLMMFAWTLYPIAYLVPAFMNNADGVVLRQLLFTIADISSKVIYGLMITYIAIQQSA 250
5 -82.300d3ddla_ f.13.1.0 (A:) automated matches {Salinibacter ruber [TaxId: 146919]}  ali model 3D-neighbors follow..  20  11.SLVFNMFSFTVATMTASFVFFVLARNNVAPKYRISMMVSALVVFIAGYHYFRITSSWEAAYAGELFNDAYRYVDWLLTVPLLTVELVLVMGLPKNERGPLAAKLGFLAALMIVLGYPGEVSENAATRGLWGFLSTIPFVWILYILFTQLGDTIQRQSSRVSTLLGNARLLLLATWGFYPIAYMIPMAFNTPGTIVALQVGYTIADVLAKAGYGVLIYNIAKAKSE 253
6 -82.200d4jq6a_ f.13.1.0 (A:) automated matches {Uncultured bacterium [TaxId: 77133]}  ali model 3D-neighbors follow..  18  1.DYVGISFWLAAAIMLASTVFFFVERSDVPVKWKTSLTVAGLVTGVAFWHYLYMRGVWI---YAGETPTVFRYIDWLITVPLQIIEFYLIIAAVTAISSAVFWKLLIASLVMLIGGFIGEAGLG--DVVVWWIVGMIAWLYIIYEIFLGEKANAGSGNAASQQAFNTIKWIVTVGWAIYPIGYAWG-YFGDGLNEDALNIVYNLADLINKAAFGLAIWAAAMKDKE 221
7 -81.000d1m0ka_ f.13.1.1 (A:) Bacteriorhodopsin {Halobacterium salinarum [TaxId: 2242]}  ali model 3D-neighbors follow..  27  3.RPEWIWLALGTALMGLGTLYFLVKGGVSDPDAKKFYAITTLVPAIAFTMYLSMLLGYGLTMVEQNPIYWARYADWLFTTPLLLLDLALLVDADQGT----ILALVGADGIMIGTGLVGALTKVYSYRFVWWAISTAAMLYILYVLFFGFTSKAESMRPEVASTFKVLRNVTVVLWSAYPVVWLIGSEGAGIVPLNIETLLFMVLDVSAKVGFGLILLRSRAIF.. 226
8 -74.800d2jafa_ f.13.1.1 (A:) automated matches {Halobacterium salinarium [TaxId: 2242]}  ali model 3D-neighbors follow..  23  6.ALLSSSLWVNVALAGIAILFVYMGRTIRPGRPRLIWGATLMIPLVSISSYLGLLSGLTVGMIEMVRSQWGRYLTWALSTPMILLALGLLADVDLGS----LFTVIAADIGMCVTGLAAAMTTSALFRWAFYAISCAFFVVVLSALVTDWAASAS--SAGTAEIFDTLRVLVVVLWLGYPIVWAVGVEGLLVQSVGATSWAYSVLDVFAKYVFAFILLRWVANNER 237
9 -74.300d5jsia_ f.13.1.0 (A:) automated matches {Candidatus actinomarina [TaxId: 1389454]}  ali model 3D-neighbors follow..  17  2.ELTYRLFMVATVGMLAGTVFLLASSREVKPEHRRGVYISALVCGIAWYHYQKMGASWE----SGSYDTGLRYVDWVLTVPLMFVEVLAVTRKGAAYN-EAVRNWGIAATVMIGAGYYGETSAGSNEYWTGFVIAMATYVWLMRNLQ----AEGEGLKGDQAVAFENIKNLILVGWIIYPLGYIAPVVG---DFDAIREVLYTIADIINKVGLGVLVLQMARVQS. 214
10 -72.000d6eida_ f.13.1.0 (A:) automated matches {Green alga (Chlamydomonas reinhardtii) [TaxId: 3055]}  ali model 3D-neighbors follow..  16  18.TASNVLQWLAAGFSILLLMFYAYQTWKSTCGWE-EIYVCAIEMVKVILEFFFEFKNPSLYLATGHRVQWLRYAEWLLTCPVILIHLSNLTGLSNDYS-RRTMGLLVSDIGTIVWGATSAMATG-YVKVIFFCLGLCYGANTFFHAAKAYIEGYHTVKGRCRQVVTGMAWLFFVSWGMFPILFILGPEGFGVLSVYGSTVGHTIIDLMSKNCWGLLGHYLRVLIHE 241
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Robinson-Rechavi M, Godzik A. Structural Genomics of Thermotoga maritima Proteins Shows that Contact Order Is a Major Determinant of Protein Thermostability. Structure (Camb). 2005 Jun;13(6):857-60.