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Query: d1xv2a_ d.290.1.1 (A:) Hypothetical protein SA2394 {Staphylococcus aureus [TaxId: 1280]}, from SCOP207

Results of FFAS03 search in SCOP207
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst NVLYQHGTLGTLMAGLLEGTATINELLEHGNLGIATLTGSDGEVIFLDGKAYHANEHKEFIELKGDEKVPYASITNFKASKTFPLQQLSQDDVFAQIKNEMLSENLFSAVKIYGTFKHMHVRMMPAQQPPYTRLIDSARRQPEEKRQDIRGAIVGFFTPELFHGVGSAGFHIHFADDERAYGGHVLDFEVDDVVVEIQNFETFQQHFPVNNETFVKAKIDYKDVAEEIREAELast
1 -107.000d1xv2a_ d.290.1.1 (A:) Hypothetical protein SA2394 {Staphylococcus aureus [TaxId: 1280]}  ali model 3D-neighbors  100  1NVLYQHGTLGTLMAGLLEGTATINELLEHGNLGIATLTGSDGEVIFLDGKAYHANEHKEFIELKGDEKVPYASITNFKASKTFPLQQLSQDDVFAQIKNEMLSENLFSAVKIYGTFKHMHVRMMPAQQPPYTRLIDSARRQPEEKRQDIRGAIVGFFTPELFHGVGSAGFHIHFADDERAYGGHVLDFEVDDVVVEIQNFETFQQHFPVNNETFVKAKIDYKDVAEEIREAE 232
2 -9.530d2dt4a_ d.290.1.0 (A:) automated matches {Pyrococcus horikoshii [TaxId: 53953]}  ali model 3D-neighbors follow..  15  1.......................................................................MVTGMFSLGRTYLFRVPEGEELLTYIKNFCKKEGIETAINGIGTLKNPKIGYFLEEKKEYKVIP-----KGSYELISLIGNVS-----------GEPFVHAHVSLGNEEFGGHLVEGEVFVAEIFLQELKGEKIERKPTKYGLALWE.............. 139
3 -7.880d3hwua_ d.290.1.0 (A:) automated matches {Ralstonia eutropha [TaxId: 264198]}  ali model 3D-neighbors follow..  16  3.......................................................................LKGKYMKTPTGYLMVLRHGDNVLQNLEQLARDEHIPSAFVGIGFMSEATFGFYDFGRKQFD-----PKTYRNVEMANMTGSIA-----------GKPSIHAHGTVTDGTAGGHLLGLTVGTGSCEI................................... 119
4 -7.090d3htna_ d.290.1.0 (A:) automated matches {Bacteroides thetaiotaomicron [TaxId: 226186]}  ali model 3D-neighbors follow..  2........................................................................MYSYKKIGNKYIVSINNHTEIVKALNAFCKEKGILSGINGIGAIGELTLRFFNPKTKAYDDKT-----REQMEISNLTGNIS-----------EQVYLHLHITVGRSDLAGHLLSAIQNAGEFVVEDYSERISRTYNPDLGLNIYDFE............ 142
5 -7.030d2nmua1 d.290.1.3 (A:6-141) Hypothetical protein STM3071 {Salmonella typhimurium [TaxId: 90371]}  ali model 3D-neighbors follow..  16  7................................................................................RFYALRLLPGQEVFSQLHAFVQQNQLRAAWIAGGSLTDVALRYAGQEAT--------TSLTGTFEVISLNGTL------------ELTGEHLHLAVSDPYLGGHMMPGCTVRTTLELVIGELPALTFSRQPCAISGYDE............. 130
6 -6.720d2p6ya1 d.290.1.0 (A:1-130) automated matches {Vibrio cholerae [TaxId: 666]}  ali model 3D-neighbors follow..  15  3................................................................................HLIALRLTRGMDLKQQIVQLVQQHRIHAGSIASGCLSTLHIRLADSVST--------LQVSAPFEILSLSGTL------------TYQHCHLHIAVADAQWGGHLLEGNLINTTAELMIHHYPQHHFTREFDPNTGYSE............. 126
7 -6.420d1vlra1 d.13.1.3 (A:146-337) mRNA decapping enzyme DcpS C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}  ali model 3D-neighbors follow..  10  1..........................................DLRLITGDDYRTITLPYLESQSLSIQWVYNILDKKAEADRIVFENPDPSDGFVLIPDLKWNQQQLDDLYLIAICHRRGIRSLRDLTPEHLPLLRNILREGQEAILKRYQV-VYLHYLP-----SYYHLHVHFTALGFEAPGHLLAQVIENLECDPKHYQQRTLTFALRTDDPLLQLLQKAQQER...... 192
8 -6.280d1qmea3 d.175.1.1 (A:71-263) Penicillin-binding protein 2x (pbp-2x), N-terminal domain {Pneumococcus (Streptococcus pneumoniae) [TaxId: 1313]}  ali model 3D-neighbors follow..  13  7..................................GTIYDRNGVPIAEDATSYNVYAVIDENYKSATGKILYVEKTQFNKVAEVKYLDMEESYVREQLSQPNLKQVSFGAKGNGITYANMMSIKKELEAAEVKGIDFTTSPNRSYPNGQFASSFIGL-EDGSKSLLGTSGMESSL---NSILAG................................................. 159
9 -6.190d1r8ga_ d.128.1.3 (A:) Carboxylate-amine ligase YbdK {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  1......................LPDFHVSEPFTLG----IELEMQVVNPPGYDLSQDSSMLIDAVKNKITAGEVKHDITESMLELATDVCRDINQAAGQFSAMQK-----VVLQAATDHHLEICGGGTHPFQKWQRVCDNERYQRTLENFGYLI--------QQATVFGQHVHVGCASGDDAIYLLH--------GLSRFVPHFIALSAASPYMQGTDTRFASSRPNI.... 183
10 -5.960d3etja1 b.84.2.1 (A:277-355) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), C-domain {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  17  8.......................................................................................................................................................NLIG--SDVNYDWLKLPLVHLHWYDKEVRPGGHL-NLTDSDTSRLTATLEALIPLLPPEYAS................... 69

FFAS is supported by the NIH grant R01-GM087218-01
1 4 6 4 7 1   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Wooley JC, Godzik A. Probing metagenomics by rapid cluster analysis of very large datasets. PLoS ONE. 2008;3(10):e3375. Epub 2008 Oct 10.