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Query: d1yg6a_ c.14.1.1 (A:) automated matches {Escherichia coli [TaxId: 562]}, from SCOP207

Results of FFAS03 search in SCOP207
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst ALVPMVIEQTSRGERSFDIYSRLLKERVIFLTGQVEDHMANLIVAQMLFLEAENPEKDIYLYINSPGGVITAGMSIYDTMQFIKPDVSTICMGQAASMGAFLLTAGAKGKRFCLPNSRVMIHQPLGGYQGQATDIEIHAREILKVKGRMNELMALHTGQSLEQIERDTERDRFLSAPEAVEYGLVDSILTHRNLast
1 -101.000d1yg6a_ c.14.1.1 (A:) automated matches {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors  100  1ALVPMVIEQTSRGERSFDIYSRLLKERVIFLTGQVEDHMANLIVAQMLFLEAENPEKDIYLYINSPGGVITAGMSIYDTMQFIKPDVSTICMGQAASMGAFLLTAGAKGKRFCLPNSRVMIHQPLGGYQGQATDIEIHAREILKVKGRMNELMALHTGQSLEQIERDTERDRFLSAPEAVEYGLVDSILTHRN 193
2 -89.100d2f6ia1 c.14.1.1 (A:179-366) Clp protease, ClpP subunit {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}  ali model 3D-neighbors follow..  40  1..........DIKDMKKDVKLFFFKKRIIYLTDEINKKTADELISQLLYLDNINH-NDIKIYINSPGGSINEGLAILDIFNYIKSDIQTISFGLVASMASVILASGKKGKRKSLPNCRIMIHQPLGNAFGHPQDIEIQTKEILYLKKLLYHYLSSFTNQTVETIEKDSDRDYYMNALEAKQYGIIDEVIETKL 182
3 -86.100d4gm2a_ c.14.1.0 (A:) automated matches {Plasmodium falciparum [TaxId: 36329]}  ali model 3D-neighbors follow..  39  2....................SLLLSKRIIFLSSPIYPHISEQIISQLLYLEYESKRKPIHLYINSTGNGITDVISIVDVINYISSDVYTYCLGKAYGIACILASSGKKGYRFSLKNSSFCLNQSYSIPFNQATNIEIQNKEIMNTKKKVIEIISKNTEKDTNVISNVLERDKYFNADEAVDFKLIDHILEK.. 183
4 -10.500d1sg4a1 c.14.1.3 (A:2-250) Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase) {Human (Homo sapiens), mitochondrial [TaxId: 9606]}  ali model 3D-neighbors follow..  13  25................................NSLSLEFLTELVISLEKLENDKSFRGVIL-VFSAGLDLTEVQELWLRLYQSNLVLVSAINGACPAGGCLVALT---DYRILADNPRYCIGLN---------ETQLGIIAPFWLKDTLENTIGHR------AAERALQLGLLFPPAEALQVGIVDQVVPEEQ 188
5 -10.000d2f6qa1 c.14.1.3 (A:108-352) Peroxisomal 3,2-trans-enoyl-CoA isomerase {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  12  39.................................................LKAASKDDSIITVLTGNGDYYSSGNDLVGCFIDFPKPLIAVVNGPAVGISVTLLGL---DAVYASDRATFHTPFSHLGQSPEGCSSYTFPKIMSPAKATEMLIFGKK-----------------LTAGEACAQGLVTEVFPDST 188
6 -9.640d3gf3a2 c.14.1.4 (A:292-587) Glutaconyl-CoA decarboxylase A subunit {Clostridium symbiosum [TaxId: 1512]}  ali model 3D-neighbors follow..  10  88........................KQNSVGIGGKLYRQGLIKMNEFVTLCARDR---PLIWLQDTTGELLGLGQSLIYSIENSKLPSLEITIRKASAAAHYVLGGPQGNNSIGTGACEYYVMPGETAAN-KAKKAGEDLQPIIGKMNDMIQMYTDKS-----------------RPKYCTEKGMVDEIVDMTE 258
7 -9.530d1dcia_ c.14.1.3 (A:) Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase) {Norway rat (Rattus norvegicus) [TaxId: 10116]}  ali model 3D-neighbors follow..  11  26................................NAMNRAFWRELVECFQKISKDSDCRAV--VVSGAGKMFTSGIDLFTVIEKCPKPVIAAIHGGCIGGGVDLISA---DIRYCTQDAFFQVKEVDVGLAADVGTLQRLPKVIGNRSLVNELTFTARK----------------MMADEALDSGLVSRVFPDKD 198
8 -9.360d4neka_ c.14.1.0 (A:) automated matches {Magnetospirillum magneticum [TaxId: 342108]}  ali model 3D-neighbors follow..  11  24................................NALIGEMYAALAEAFAKGEADDDVNVFLI---SAGNDLPDADRFIRAVAGARKPVVAAVRGAAIGIGSTLLPH---DLVYAAPGTRFHMPFINLGIVPEAGSSQTMPALAGHRRAAEMLMLGEP-----------------FGVDTAEAVGLINGVVPGED 180
9 -9.300d4lk5a_ c.14.1.0 (A:) automated matches {Mycobacterium avium [TaxId: 262316]}  ali model 3D-neighbors follow..  15  27................................NSLTVPVITGIADAMEYAATDPEVKVVRI---SSGAGISA--RLVRAIAALPHPVVAVVQGPAAGVGVSIALA---DVVLASENAFFMLAFTKIGLMPDGGASALVAAAVGRIRAMQMALLPER-----------------LPAAEALAWGLVTAVYPADE 189
10 -9.110d4og1a_ c.14.1.0 (A:) automated matches {Novosphingobium aromaticivorans [TaxId: 279238]}  ali model 3D-neighbors follow..  15  30................................NALDDAMFEGIVAAGHHLHSVKGVRCV--VLSGAGRSFCAGLDLAMVWRKLPMPVIAAVHGVCFGGGLQVASG---DIRFITPDARLAVMEVKWGLVPDMAGYALWRGNV-----------------RDDVLRELTYTHREFSGEEAVRFGFATHVADD.. 195
11 -9.070d4jfca_ c.14.1.0 (A:) automated matches {Polaromonas sp. [TaxId: 296591]}  ali model 3D-neighbors follow..  12  23................................NALGPEIYAAGIEALNAAENNPEIRSVVI---CAGGNLQR--NWIDSIRTYPKPVIAAVEGAAAGAGFSLALA---DFVVAASNAVFVMSYSTVGLSPDGGGSWSLARSLPRALASELLMGGER-----------------ISAQRLHDLGLVNKVASAGD 186
12 -9.070d5dufa1 c.14.1.0 (A:1-243) automated matches {Mycobacterium tuberculosis [TaxId: 1773]}  ali model 3D-neighbors follow..  13  22....................................NALNSQLVEELTQAIRKAGDGSARAIVLTGQGTAFCAIELHKAMDASPMPVVGAINGPAIGAGLQLAMQ---DLRVVAPDAFFQFPTSKYGLALDNWSIRRLSSLVGHGRARAMLLSAEK-----------------LTAEIALHTGMANRIGTLAD 176
13 -9.050d3fdua1 c.14.1.0 (A:10-255) automated matches {Acinetobacter baumannii [TaxId: 400667]}  ali model 3D-neighbors follow..  11  24................................NALYGELYLWIAKALDEADQNKDVRVVVL---TAGNDMKDPFVLLKSAARLSKPLIIAVKGVAIGIGVTILLQ---DLVFADNTALFQIPFVSLGLSPEGGASQLLVKQAGYHKAAELLFTAKK-----------------FNAETALQAGLVNEIVED.. 184

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Jaroszewski L, Godzik A. Clustering of highly homologous sequences to reduce the size of large protein databases. Bioinformatics. 2001 Mar;17(3):282-3.