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Query: d1ysra_ d.122.1.3 (A:) automated matches {Mycobacterium tuberculosis [TaxId: 1773]}, from SCOP207

Results of FFAS03 search in SCOP207
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst DDHVPVDITDLLDRAAHDAARIYPDLDVSLVPSPTCIIVGLPAGLRLAVDNAIANAVKHGGATLVQLSAVSSRAGVEIAIDDNGSGVPEGERQVVFERFSRGSTASHSGSGLGLALVAQQAQLHGGTASLENSPLGGARLVLRLPGPSLast
1 -74.800d1ysra_ d.122.1.3 (A:) automated matches {Mycobacterium tuberculosis [TaxId: 1773]}  ali model 3D-neighbors  100  1DDHVPVDITDLLDRAAHDAARIYPDLDVSLVPSPTCIIVGLPAGLRLAVDNAIANAVKHGGATLVQLSAVSSRAGVEIAIDDNGSGVPEGERQVVFERFSRGSTASHSGSGLGLALVAQQAQLHGGTASLENSPLGGARLVLRLPGPS 148
2 -63.100d1bxda_ d.122.1.3 (A:) Histidine kinase domain of the osmosensor EnvZ {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  25  6.PMEMADLNAVLGEVIAAESGYEREIETALY-PGSIEVKMHPLSIKRAVANMVVNAARYG-NGWIKVSSGTEPNRAWFQVEDDGPGIAPEQRKHLFQPFVRGDSARTSGTGLGLAIVQRIVDNHNGMLELGTSERGGLSIRAWLPVPV 151
3 -56.600d1id0a_ d.122.1.3 (A:) Histidine kinase PhoQ domain {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  27  1..RELHPVAPLLDNLTSALNKVYQRKGVNIDISPEISFVGEQNDFVEVMGNVLDNACKYCLE-FVEISARQTDEHLYIVVEDDGPGIPLSKREVIFDRGQRVDTLRP-GQGVGLAVAREITEQYEGKIVAGESMLGGARMEVIFGR.. 144
4 -55.800d2c2aa2 d.122.1.3 (A:321-481) Sensor histidine kinase TM0853 {Thermotoga maritima [TaxId: 2336]}  ali model 3D-neighbors follow..  26  3.NREKVDLCDLVESAVNAIKEFASSHNVNVNVPCPVEAYIDPTRIRQVLLNLLNNGVKYSKKDYVKVILDEKDGGVLIIVEDNGIGIPDHAKDRIFEQFYRVDSSLTPGTGLGLAITKEIVELHGGRIWVESEVGKGSRFFVWIPKDR 160
5 -42.000d2e0aa2 d.122.1.0 (A:188-386) automated matches {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  21  19......DAFECSRMLCDQYYLSSPELKLTQFPDQPIHIVYVPSHLHHMLFELFKNAMRATVEHPIEVIVVLGKEDLTIKISDRGGGVPLRIIDRLFSYTYSTANAPLAGFGYGLPISRLYAKYFQGDLNLYSLSGYGTDAIIYLKALS 181
6 -39.600d1r62a_ d.122.1.3 (A:) Nitrogen regulation protein NtrB, C-terminal domain {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  19  1..RVTESIHKVAERVVTLVSELPDNVRLIRDYDPSLPLAHDPDQIEQVLLNIVRNALRTRTAFQLTLHGERYRLAARIDVEDNGPGIPPHLQDTLFYPMV---SGREGGTGLGLSIARNLIDQHSGKIEFTSWP-GHTEFSVYLPIRK 156
7 -39.100d4e01a2 d.122.1.4 (A:186-375) Branched-chain alpha-ketoacid dehydrogenase kinase (BCK) {Norway rat (Rattus norvegicus) [TaxId: 10116]}  ali model 3D-neighbors follow..  19  9....RLSPKKIIEKWVDFARRLCEHKRVRINGHVAARFPFIPMPLDYILPELLKNAMRATMESDVVITIANNDVDLIIRISDRGGGIAHKDLDRVMDYHFTTAEASTHGFGFGLPTSRAYAEYLGGSLQLQSLQGIGTDVYLRLRHID 189
8 -30.400d2hkja3 d.122.1.2 (A:10-228) Topoisomerase VI-B subunit {Sulfolobus shibatae [TaxId: 2286]}  ali model 3D-neighbors follow..  21  16.....................................FPNPARALYQTVRELIENSLDATDVHGILPNIKDARQIYKVNVVDNGIGIPPQEVPNAFGRVLYSSKYVNGMYGLGVKAAVLYSQMHQDKIEIETSPNSKRIYTFKLK... 136
9 -29.100d1th8a1 d.122.1.3 (A:1-136) Anti-sigma factor spoIIab {Bacillus stearothermophilus [TaxId: 1422]}  ali model 3D-neighbors follow..  19  36........................................ELTEIKTVVSEAVTNAIIHGPNGIVSISVIIEDGVVHLTVRDEGVGIP--DIEEARQPLFTTKPELE-RSGMGFTIMENFM----DEVIVESEVNKGTTVYLK..... 135
10 -21.100d1i58a_ d.122.1.3 (A:) Histidine kinase CheA {Thermotoga maritima [TaxId: 2336]}  ali model 3D-neighbors follow..  22  7...........ISFVFNRFPRMVRDLAKKMNKEVNFIMRGEDTELDRTLLHLLRNAIDHGPIGTLILSARHEGNNVVIEVEDDGRGIDKEKIIRLFVPGFSTKESEVSGRGVGMDVVKNVVESLNGSISIESEKDKGTKVTIRLPLT. 189
11 -11.800d1s14a_ d.122.1.2 (A:) Topoisomerase IV subunit B {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  14  2........................................DTTRPNHLGQEVIDNSVDEALAGRVDVILHADQS---LEVIDDGRGMPVDIHPE--------EGVPAVELILCISVVNALSK.......................... 75
12 -11.700d4k4oa1 d.122.1.0 (A:18-224) automated matches {Enterococcus faecalis [TaxId: 226185]}  ali model 3D-neighbors follow..  24  17........................................SGEGLHHLVWEIVDNSIDEALAGFAKSIQVIIEPDDSITVIDDGRGIPVGIQAKVFGKFGGGGYKVSGGLGVGSSVVNALST.......................... 113
13 -10.900d1q1da1 d.122.1.2 (A:7-245) DNA topoisomerase II {Baker`s yeast (Saccharomyces cerevisiae) [TaxId: 4932]}  ali model 3D-neighbors follow..  17  51.....................................VPGLFKIFDEILVNAADNKVRDPSMKRIDVNIHAEEH--TIEVKNDGKGIPIEIHNKIFSNYDDDEKKVTGGNGYGAKLCNIFST.......................... 148
14 -10.500d1h7sa2 d.122.1.2 (A:29-231) DNA mismatch repair protein PMS2 {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  19  5..........................................LSLSTAVKELVENSLD-AGATNIDLKL-KDYGVDLIEVSDNGCGVEEENFEGLTLKHHTSKIQEFGFRGEALSSLCALSDVHNGKIIQKTPYPRGTTVSVQ..... 132
15 -10.200d1b63a2 d.122.1.2 (A:1-216) DNA mismatch repair protein MutL {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  22  21..........................................ERPASVVKELVENSLD-AGATRIDIDIE-RGGAKLIRIRDNGCGIKKDELALALARHATSKIASLGFRGEALASISSVAYAEGRDMNVTVKPAAGTTLEVL..... 148
16 -9.870d3cwva1 d.122.1.0 (A:8-206) automated matches {Myxococcus xanthus [TaxId: 246197]}  ali model 3D-neighbors follow..  13  19........................................GEYGLHHLVYFLLDVAYEEARRGECRDVVLEVGGDGSIALFCTSRTVTAENLVRV-AGFLGRPPGDGWGWDSMLVVSLALSS.......................... 102

FFAS is supported by the NIH grant R01-GM087218-01
1 4 7 2 8 5   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Godzik A. Discovering new genes with advanced homology detection. Trends Biotechnol. 2002 Aug;20(8):315-6.