Scheduled maintenance will begin on May 30th, 2025. Server will be temporarily unavailable — learn more.
current user: public
If you have questions about the server, please let us know.

Query: d1z4da1 a.60.4.1 (A:5-64) DNA repair protein Rad51, N-terminal domain {Methanococcus voltae [TaxId: 2188]}, from SCOP207

Results of FFAS03 search in SCOP207
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60
# Score Template Links and tools%idFirst LTDLPGVGPSTAEKLVEAGYIDFMKIATATVGELTDIEGISEKAAAKMIMGARDLCDLGFLast
1 -32.200d1z4da1 a.60.4.1 (A:5-64) DNA repair protein Rad51, N-terminal domain {Methanococcus voltae [TaxId: 2188]}  ali model 3D-neighbors  100  1LTDLPGVGPSTAEKLVEAGYIDFMKIATATVGELTDIEGISEKAAAKMIMGARDLCDLGF 60
2 -28.600d3ldaa1 a.60.4.1 (A:78-144) DNA repair protein Rad51, N-terminal domain {Baker`s yeast (Saccharomyces cerevisiae) [TaxId: 4932]}  ali model 3D-neighbors follow..  31  8KLQVNGITMADVKKLRESGLHTAEAVAYAPRKDLLEIKGISEAKADKLLNEAARLVPMGF 67
3 -28.500d2z43b1 a.60.4.1 (B:12-72) DNA repair protein Rad51, N-terminal domain {Sulfolobus solfataricus [TaxId: 273057]}  ali model 3D-neighbors follow..  37  3INDLPGISQTVINKLIEAGYSSLETLAVASPQDLSVAAGIPLSTAQKIIKEARDALDI.. 60
4 -26.400d1u9la_ a.60.4.2 (A:) Transcription elongation protein NusA {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  24  8FTKYLDIDEDFATVLVEEGFSTLEELAYVPMKELLEIEGLDEPTVEALRERAKNALA... 64
5 -19.100d1x2ia1 a.60.2.5 (A:2-69) ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]}  ali model 3D-neighbors follow..  30  12VEGLPHVSATLARRLLKH-FGSVERVFTASVAELMKVEGIGEKIAKEIRRVITA...... 64
6 -19.000d1kfta_ a.60.2.3 (A:) Excinuclease UvrC C-terminal domain {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  26  4LETIEGVGPKRRQMLLKY-MGGLQGLRNASVEEIAKVPGISQGLAEKIFWSLKH...... 56
7 -18.400d2a1jb1 a.60.2.5 (B:220-296) DNA excision repair protein ERCC-1 {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  15  20LTTVKSVNKTDSQTLLTT-FGSLEQLIAASREDLALCPGLGPQKARRLFDVLHE...... 72
8 -15.200d2p6ra2 a.289.1.2 (A:489-686) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]}  ali model 3D-neighbors follow..  21  146LVRIRHIGRVRARKLYNAGIRNAEDIVRHREKVASL---IGRGIAERVVEGISV...... 196
9 -14.000d4i2aa2 a.60.12.0 (A:243-302) automated matches {Mouse (Mus musculus) [TaxId: 10090]}  ali model 3D-neighbors follow..  24  10FTSVFGVGLKTAEKWFRMGFRTLSKIQSDKSLRFTQMQKAGFLYYEDLVS.......... 59
10 -13.300d3wu2u_ a.60.12.2 (U:) Photosystem II 12 kDa extrinsic protein PsbU {Thermosynechococcus vulcanus [TaxId: 32053]}  ali model 3D-neighbors follow..  17  28FIQYRGLYPTLAKLIVKNA---------ESVEDVLNIPGLTERQKQILRENLE....... 73
11 -13.000d2duya1 a.60.2.7 (A:11-75) Uncharacterized protein TTHA1967 {Thermus thermophilus [TaxId: 274]}  ali model 3D-neighbors follow..  28  19LMALPGIGPVLARRI-------VEGRPYARVEDLLKVKGIGPATLERLRPYLR....... 64
12 -12.900d2a1ja1 a.60.2.5 (A:837-898) DNA repair endonuclease XPF {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  23  5LLKMPGVNAKNCRSLMHH-VKNIAELAALSQDELTSILG-NAANAKQLYDFIHT...... 56
13 -12.800d1cuka2 a.60.2.1 (A:65-142) DNA helicase RuvA subunit, middle domain {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  26  11LIKTNGVGPKLALAILSG--QFVNAVEREEVGALVKLPGIGKKTAERLIVEMKDRFK... 69
14 -12.700d1ixra1 a.60.2.1 (A:63-135) DNA helicase RuvA subunit, middle domain {Thermus thermophilus [TaxId: 274]}  ali model 3D-neighbors follow..  21  12LLSVSGVGPKVALALLSA--LLARALLEGDARLLTSASGVGRRLAERIALELKGKVP... 70
15 -12.500d2q0zx1 a.289.1.1 (X:33-208) Protein pro2281 {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  12  121LKQLPHFTSEHIKRCTDKGVESVFDIMEMEDEERNALLQLTDSQIADVARFCNRY..... 175
16 -11.500d2edua1 a.60.2.7 (A:8-98) KIF22, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  24  35LRSLQRIGPKKAQLIVGWRELH------SQVEDLERVEGITGKQMESFLKAN........ 83
17 -11.500d1doqa_ a.60.3.1 (A:) C-terminal domain of RNA polymerase alpha subunit {Thermus thermophilus [TaxId: 274]}  ali model 3D-neighbors follow..  18  14.....GLSTRVLHSLKEEGIESVRALLALNLKDLKNIPGIGERSLEEIKEALEKK..... 63
18 -11.100d1z3eb1 a.60.3.1 (B:245-311) C-terminal domain of RNA polymerase alpha subunit {Bacillus subtilis [TaxId: 1423]}  ali model 3D-neighbors follow..  14  13.....DLSVRSYNCLKRAGINTVQELANKTEEDMMKVRNLGRKSLEEVKAKLEEL..... 62
19 -11.100d2fmpa2 a.60.12.1 (A:92-148) DNA polymerase beta {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  26  9LTRVSGIGPSAARKFVDEGIKTLEDLRK-NEDKLNHHQRIGLKYFGDFEK.......... 57
20 -11.000d2bcqa2 a.60.12.1 (A:329-385) DNA polymerase lambda {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  17  10FSNIWGAGTKTAQMWYQQGFRSLEDIRSQASLTTQQAIGL.................... 49
21 -10.800d3k4ga_ a.60.3.1 (A:) automated matches {Escherichia coli K-12 [TaxId: 83333]}  ali model 3D-neighbors follow..  12  16.....ELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKSLTEIKDVLASR..... 65
22 -10.300d3bzca1 a.60.2.6 (A:474-563) Transcriptional accessory factor Tex {Pseudomonas aeruginosa [TaxId: 287]}  ali model 3D-neighbors follow..  22  37LARISGLNSTLAQNIVAHRDAN----AFRTRDELKKVSRLGEKTFEQAAGFLR....... 86
23 -9.720d1gm5a2 b.40.4.9 (A:106-285) RecG "wedge" domain {Thermotoga maritima [TaxId: 2336]}  ali model 3D-neighbors follow..  13  12IQYAKGVGPNRKKKLKKLGIETLRDLLERDYEDRRKIFKLNDLLPGEKVTTQGKIVSV.. 72
24 -9.430d3gv7b1 e.8.1.7 (B:26-299) DNA polymerase iota {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  18  211IKEIPGIGYKTAKCLEALGINSVRDLQTFSPKILEKE--LGISVAQRIQKLSFGE..... 263
25 -9.200d1ci4a_ a.60.5.1 (A:) Barrier-to-autointegration factor, BAF {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  24  20VGSLAGIGEVLGKKLEERGFDKAYVVEDLFREWLKDTCGANAKQSRDCFGCLREWCD... 86
26 -9.150d1jx4a2 e.8.1.7 (A:1-240) DinB homolog (DBH) {Sulfolobus solfataricus, DNA polymerase IV [TaxId: 2287]}  ali model 3D-neighbors follow..  33  180IADVPGIGNITAEKLKKLGINKLVDTLSIEFDKLKGM--IGEAKAKYLISLAR....... 230
27 -9.140d2i5ha1 e.71.1.1 (A:16-195) Hypothetical protein AF1531 {Archaeoglobus fulgidus [TaxId: 2234]}  ali model 3D-neighbors follow..  15  117LELLPGVGKKMMWAIIEE-----KKRPFESFEDIAQRVKGIQRPEKLIVSRIIYEIK... 169
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 1 0 7   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster
Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Godzik A. cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences. Bioinformatics. 2006 May 26;