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current user: public |
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Query: d2c2aa1 a.30.2.1 (A:232-320) Sensor histidine kinase TM0853 {Thermotoga maritima [TaxId: 2336]}, from SCOP207 |
. 10 . 20 . 30 . 40 . 50 . 60 . 70 . 80 . | |||||||
# | Score | Template | Links and tools | %id | First | MENVTESKELERLKRIDRMKTEFIANISHELRTPLTAIKAYAETIYNSLGELDLSTLKEFLEVIIDQSNHLENLLNELLDFSRLERKSL | Last |
1 | -63.600 | d2c2aa1 a.30.2.1 (A:232-320) Sensor histidine kinase TM0853 {Thermotoga maritima [TaxId: 2336]} | ali model 3D-neighbors | 100 | 1 | MENVTESKELERLKRIDRMKTEFIANISHELRTPLTAIKAYAETIYNSLGELDLSTLKEFLEVIIDQSNHLENLLNELLDFSRLERKSL | 89 |
2 | -17.200 | d5b1na_ a.30.2.1 (A:) automated matches {Escherichia coli [TaxId: 562]} | ali model 3D-neighbors follow.. | 28 | 4 | ...................RTLLMAGVSHDLRTPLTRIRLATEMM--------SEQDGYLAESINKDIEECNAIIEQFIDYLR...... | 59 |
3 | -8.250 | d2h8ga_ c.56.2.0 (A:) automated matches {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | ali model 3D-neighbors follow.. | 22 | 179 | .................DMEGAAVAYVADLLKIPVVFLKAVTDLV-----DGDKPTAEEFLQNLTVVTAALEGTATKVIN......... | 236 |
4 | -6.790 | d4oy3a1 c.56.2.0 (A:2-230) automated matches {Helicobacter pylori [TaxId: 85963]} | ali model 3D-neighbors follow.. | 14 | 172 | .................EMEGASVAFVCQKFGVPCCVLRSISNNA-------DEKAGMSFDEFLEKSAHTSAKFLKSMVD......... | 227 |
5 | -6.600 | d4f1wa_ c.56.2.1 (A:) automated matches {Salmonella enterica [TaxId: 904139]} | ali model 3D-neighbors follow.. | 17 | 172 | .................EMEATAIAHVCHNFNVPFVVVRAISDVA-------DQQSHLSFDEFLAVAAKQSTLMVETLVQ......... | 227 |
6 | -6.380 | d1d8ia_ d.63.1.1 (A:) mRNA triphosphatase CET1 {Baker`s yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | ali model 3D-neighbors follow.. | 14 | 233 | ........DITKVENHNQNSKSRQSETTHEVELEINT-----------------PALLNAFDNITNDSKEYASLIRTFLNNGTIIRRKL | 296 |
7 | -6.310 | d1t94a1 d.240.1.1 (A:411-515) DNA polymerase kappa {Human (Homo sapiens) [TaxId: 9606]} | ali model 3D-neighbors follow.. | 14 | 6 | MSVERTFSEINKAEEQYSLCQELCSELAQDLQK--ERLKGRTVTIKLKNVNFEVKTRASTVSSVVSTAEEIFAIAKELLK......... | 83 |
8 | -6.000 | d2c0ga1 a.71.1.0 (A:1146-1251) automated matches {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | ali model 3D-neighbors follow.. | 9 | 5 | ............IKEFNEVLKNYANIPDAEQLKLIEKLQAKQEQLTDPEQQQNARAYLIYMRFLEEETKRLLRLKAGKVTEAKKEE... | 86 |
9 | -5.930 | d1f44a1 a.60.9.1 (A:20-129) Cre recombinase {Bacteriophage P1 [TaxId: 10678]} | ali model 3D-neighbors follow.. | 11 | 5 | .........RKNLMDMFRDRQAFSEHTWKMLLSVCRSWAAWCKLNNRKWFPAEPEDVRDYLLYLQARGLAVKTIQQHLGQLNMLHR... | 81 |
10 | -5.790 | d2qklb_ a.242.1.1 (B:) mRNA decapping enzyme Dcp2p, N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | ali model 3D-neighbors follow.. | 16 | 11 | ...............LDDLSARFILNLPAEEQSSVERL--YEDFIRAQNDQLPSLGLRVFSAKLFAHCPLLWKWSKVHEEA........ | 84 |
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9. Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018. Alonso A, Rahmouni S, Williams S, van Stipdonk M, Jaroszewski L, Godzik A, Abraham RT, Schoenberger SP, Mustelin T. Tyrosine phosphorylation of VHR phosphatase by ZAP-70. Nat Immunol. 2003 Jan;4(1):44-8. Epub 2002 Nov 25. |