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Query: d2cs0a1 d.93.1.1 (A:8-113) Hematopoietic SH2 domain containing protein HSH2D {Human (Homo sapiens) [TaxId: 9606]}, from SCOP207

Results of FFAS03 search in SCOP207
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst GQLAQDGVPEWFHGAISREDAENLLESQPLGSFLIRVSHSHVGYTLSYKAQSSCCHFMVKLLDDGTFMIPGEKVAHTSLDALVTFHQQKPIEPRRELLTQPCRQKDLast
1 -68.900d2cs0a1 d.93.1.1 (A:8-113) Hematopoietic SH2 domain containing protein HSH2D {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors  100  1GQLAQDGVPEWFHGAISREDAENLLESQPLGSFLIRVSHSHVGYTLSYKAQSSCCHFMVKLLDDGTFMIPGEKVAHTSLDALVTFHQQKPIEPRRELLTQPCRQKD 106
2 -52.200d4eiha_ d.93.1.1 (A:) automated matches {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  27  1....SLEKHSWYHGPVSRSAAEYLLSSLINGSFLVRESESSPGLSISLRYEGRVYHYRINTTADGKVYV-TAESRFSTLAELVHHHSTVA-DGLVTTLHYPAPKCN 101
3 -50.900d1qada_ d.93.1.1 (A:) Phosphatidylinositol 3-kinase, p85-alpha subunit {Cow (Bos taurus) [TaxId: 9913]}  ali model 3D-neighbors follow..  24  2.DLPHHDEKTWNVGSSNRNKAENLLRGKRDGTFLVRESSKQGCYACSVVVDGEVKHCVINKTATGYGFA-EPYNLYSSLKELVLHYQHTSLDSLNVTLAYPV.... 105
4 -49.400d3eaza_ d.93.1.0 (A:) automated matches {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  28  3...TKLSLMPWFHGKITREQAERLLYPPETGLFLVRESTNYPGYTLCVSSDGKVEHYRIMYHASKLSI--DEEVYFENLMQLVEHYTSDA-DGLCTRLIKPKVME. 102
5 -49.400d2gsba1 d.93.1.0 (A:8-113) automated matches {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  25  2.EEDPHEGKIWFHGKISKQEAYNLLMTGQVCSFLVRPSDNTPGYSLYFRTNENIQRFKICPTPNNQFMMGGRY--YNSIGDIIDHYRKEQI-VEGYYLKEPVPMQD 105
6 -49.200d5jn0a_ d.93.1.1 (A:) automated matches {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  27  1...DSEERSSWYWGRLSRQEAVALLQGQRHGVFLVRDSSTSPGYVLSVSENSRVSHYIINSSGPRRLRIGDQE--FDSLPALLEFYKIHYLD--TTTLIEPVARS. 99
7 -46.600d2dlza1 d.93.1.0 (A:8-112) automated matches {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  24  1SREIDYTAYPWFAGNMERQQTDNLLKSHASGTYLIRERPAEAEFAISIKFNDEVKHIKVVEKDNWIHI--TEAKKFDSLLELVEYYQCHSLKQLDTTLKYP..... 104
8 -46.200d2oq1a2 d.93.1.1 (A:135-258) Tyrosine-protein kinase zap-70 {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  25  21IATTAHERMPWYHSSLTREEAERKLYSQTDGKFLLRPRKEQGTYALSLIYGKTVYHYLISQDKAGKYCI-PEGTKFDTLWQLVEYLKLKA-DGLIYCLKEACPN.. 124
9 -46.000d1d4ta_ d.93.1.1 (A:) The Xlp protein Sap {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  25  2......DAVAVYHGKISRETGEKLLATGLDGSYLLRDSESVPGYCLCVLYHGYIYTYRVSQTETGSWSAGVHKRYFRKIKNLISAFQKPD-QGIVIPLQYPVEK.. 104
10 -45.900d5w3ra1 d.93.1.1 (A:519-628) automated matches {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  23  2...QPLSGYPWFHGMLSRLKAAQLVLTGSHGVFLVRQSETRRGYVLTFNFQGKAKHLRLSLNAAGQCRV--QHLHFQSIFDMLEHFRVHPIGSSDVVLVSYVPSS. 110
11 -45.400d1i3za_ d.93.1.1 (A:) Ews/fli1 activated transcript 2, Eat2 {Mouse (Mus musculus) [TaxId: 10090]}  ali model 3D-neighbors follow..  21  3........LPYYHGCLTKRECEALLKGGVDGNFLIRDSESVPGLCLCVSFKKLVYSYRIFREKHGYYRIETDRTIFPNLQELVSKYGKPG-QGLVVHLSNPIMR.. 103
12 -45.400d2dx0a_ d.93.1.0 (A:) automated matches {Mouse (Mus musculus) [TaxId: 10090]}  ali model 3D-neighbors follow..  24  3PPTELHFGEKWFHKKVSRTSAEKLLQGAKDGTFLVRESETFPNYTLSFWRSGRVQHCRIRSTMENGKYYLTDNLTFNSIYALIQHYREAHLAEFELRLTDPVP... 117
13 -45.400d3ov1a_ d.93.1.1 (A:) Growth factor receptor-bound protein 2 (GRB2) {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  30  2......KPHPWFFGKIPRAKAEEMLSKRHDGAFLIRESESAPGFSLSVKFGNDVQHFKVLRDGAGKYFLWVVK--FNSLNELVDYHRSTSVQQIFLRDIEQVPQ.. 102
14 -45.300d1nrva_ d.93.1.1 (A:) Growth factor receptor-bound protein 10, GRB10 {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  25  3......RTQHWFHGRISREESHRIIKGLVDGLFLLRDSQSNPKFVLTLCHHQKIKNFQILPCEDDGFSLDDGNTKFSDLIQLVDFYQLNK-GVLPCKLKHHCIR.. 105
15 -45.200d2oq1a1 d.93.1.1 (A:5-134) Tyrosine-protein kinase zap-70 {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  28  1...DPAAHLPFFYGSISRAEAEEHLKGMADGLFLLRQCLRSLGYVLSLVHDVRFHHFPIERQLNGTYAI-AGGKAHCGPAELCEFYSRDP-DGLPCNLRKPCNRPS 104
16 -45.000d1lkka_ d.93.1.1 (A:) p56-lck tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  31  2......EPEPWFFKNLSRKDAERQLLGNTHGSFLIRESESTAGFSLSVRDFDQVKHYKIRNLDNGGFYI-SPRITFPGLHELVRHYTNAS-DGLCTRLSRPCQT.. 105
17 -44.900d2ysxa1 d.93.1.0 (A:8-119) automated matches {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  29  2.......VPCWNHGNITRSKAEELLSRGKDGSFLVRASESISRYALCVLYRNCVYTYRILPNEDDKFTVQASMRFFTKLDQLIEFYKKEN-MGLVTHLQYPVPLEE 105
18 -44.300d2iuga1 d.93.1.1 (A:10-112) automated matches {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  20  2.........EWYWGDISREEVNEKLRDTADGTFLVRDASTKMDYTLTLRKGGNNKLIKIFHRDGKYGF--SDPLTFSSVVELINHYRNESLPKLDVKLLYPVSKYQ 102
19 -43.500d1ayaa_ d.93.1.1 (A:) Tyrosine phosphatase Syp {Mouse (Mus musculus) [TaxId: 10090]}  ali model 3D-neighbors follow..  33  1.......MRRWFHPNITGVEAENLLLTRVDGSFLARPSKSNPGFTLSVRRNGAVTHIKIQNTGDYYDLYGGEK--FATLAELVQYYMEHH................ 83
20 -43.300d2izva2 d.93.1.1 (A:274-385) Suppressor of cytokine signaling 4, SOCS-4 {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  20  4.DLLQINNNPCYWGVMDKYAAEALLEGKPEGTFLLRDSAQEDYFSVSFRRYSRSLHARIEQWNHNFSFDAHDPCHSPDITGLLEHYKDPSACMFFEPLSTPLIRT. 111
21 -42.800d3s9ka1 d.93.1.1 (A:5-110) automated matches {Mouse (Mus musculus) [TaxId: 10090]}  ali model 3D-neighbors follow..  27  1....NLETYEWYNKSISRDKAEKLLLDTKEGAFMVRDSRTPGTYTVSVFTKAIIKHYHIKETNDSKRYYVAEKYVFDSIPLLIQYHQYNG-GGLVTRLRYPV.... 105
22 -42.800d2b3oa2 d.93.1.0 (A:109-215) automated matches {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  29  1.........RWYHGHMSGGQAETLLQAKEPWTFLVRESLSQPGFVLSVLSDQRVTHIKVMCEGGRYTV--GGLETFDSLTDLVEHFKKTGISGAFVYLRQPY.... 105
23 -42.700d2ciaa1 d.93.1.0 (A:284-380) automated matches {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  30  1.........EWYYGNVTRHQAECALNERVEGDFLIRDSESSPSFSVSLKASGKNKHFKVQLVDNVYCI---GQRRFHTMDELVEHYKKAPIHGEKLYLVRAL.... 96
24 -42.300d5tnwa1 d.93.1.1 (A:663-758) Phospholipase C-gamma-1 {Cow (Bos taurus) [TaxId: 9913]}  ali model 3D-neighbors follow..  26  2......ESKEWYHASLTRAQAEHMLMRPRDGAFLVRKRNEPNSYAISFRAEGKIKHCRVQQ--EGQTVMLGNS-EFDSLVDLISYYEKHPL-YRKMKLRYPINE.. 96
25 -41.300d2eo6a1 d.93.1.0 (A:8-135) automated matches {Mouse (Mus musculus) [TaxId: 10090]}  ali model 3D-neighbors follow..  27  8DQEAELLGKPWYAGACDRKSAEEALHRNKDGSFLIRKSSGHDSYTLVAFFNKRVYNIPVRFIEATKQYALGKEEYFGSVVEIVNSHQHNPLTKDSTRLKYAVK... 126
26 -39.500d1mila_ d.93.1.1 (A:) Shc adaptor protein {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  26  2...SQLRGEPWFHGKLSRREAEALLQL--NGDFLVRESTTTPGYVLTGLQSGQPKHLLLVDPEG---VVRTKDHRFESVSHLISYHMDNHLAGSELCLQQPVERK. 103
27 -39.400d2kk6a1 d.93.1.0 (A:12-116) automated matches {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  26  1...KPLAEQDWYHGAIPRIEAQELLKK--QGDFLVRESHGKPGYVLSVYSDGQRRHFIIQYVDNMYRF---EGTGFSNIPQLIDHHYTTKQKKSGVVLLNPIPKDK 102
28 -38.900d2c9wa2 d.93.1.1 (A:32-134) Suppressor of cytokine signaling 2, SOCS-2 {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  22  8.ALRELGQTGWYWGSMTVNEAKEKLKEAPEGTFLIRDSSHSDYLTISVKTSAGPTNLRIEYQDGKFRLVKSKLKQFDSVVHLIDYYVQMC................ 102
29 -38.500d1xa6a2 d.93.1.1 (A:21-161) Beta-chimaerin, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  27  30...RPKYYGREFHGIISREQADELLGG-VEGAYILRESQRQPGYTLALRFGNQTLNYRLFH--DGKHFVGEKR--FESIHDLVTDGLITLY............... 113
30 -35.100d1bg1a3 d.93.1.1 (A:576-716) STAT3b {Mouse (Mus musculus) [TaxId: 10090]}  ali model 3D-neighbors follow..  14  1..ILALWNEGYIMGFISKERERAILSTKPPGTFLLRFSESSKEGGVTFTWVEKDISGSTQIQSVEPYT--KQQLNNMSFAEIIMGYKIMDAT.............. 88
31 -33.200d1uura3 d.93.1.1 (A:577-707) STAT homologue {Slime mold (Dictyostelium discoideum) [TaxId: 44689]}  ali model 3D-neighbors follow..  15  2.HISTLWQEGIIYGYMGRQEVNDALQNQDPGTFIIRFSERNPGFGIAYIGVERIKHYLVQPNDTAAAKKTFPDF-LSEHSQFVNLLQWTK-DTNGAPRFLKLHKDT 108
32 -24.400d1q88a_ e.47.1.1 (A:) 39 kda initiator binding protein, IBP39, C-terminal domains {Trichomonas vaginalis [TaxId: 5722]}  ali model 3D-neighbors follow..  93.KIASLLLISNNKGHLTFDPQAEKNANNQRDSISGWFDQNEPNLILKTPTGIRKIWNKPLIEATGQYLMDENGEKYDSWDKYFEMKP................... 180
33 -10.600d3eh8a2 d.95.2.1 (A:126-254) automated matches {Emericella nidulans [TaxId: 162425]}  ali model 3D-neighbors follow..  16  13........SAWLVGFI---EAE--------GCFSVYKLNKDASFDIAQRDGDILISAIRKYLSFTTKVYLDKTNCSRSVENIIKFLQNAPVK.............. 97

FFAS is supported by the NIH grant R01-GM087218-01
1 4 7 6 0 7   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Pio F, Pawlowski K, Godzik A. Saturated BLAST: an automated multiple intermediate sequence search used to detect distant homology. Bioinformatics. 2000 Dec;16(12):1105-10.