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Query: d2fm8a1 d.198.1.1 (A:1-134) Surface presentation of antigens protein SpaK (Spa15) {Salmonella typhimurium [TaxId: 90371]}, from SCOP207

Results of FFAS03 search in SCOP207
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130
# Score Template Links and tools%idFirst MQHLDIAELVRSALEVSGCDPSLIGGIDSHSTIVLDLFALPSICISVKDDDVWIWAQLGADSMVVLQQRAYEILMTIMEGCHFARGGQLLLGEQNGELTLKALVHPDFLSDGEKFSTALNGFYNYLEVFSRSLMLast
1 -71.700d2fm8a1 d.198.1.1 (A:1-134) Surface presentation of antigens protein SpaK (Spa15) {Salmonella typhimurium [TaxId: 90371]}  ali model 3D-neighbors  100  1MQHLDIAELVRSALEVSGCDPSLIGGIDSHSTIVLDLFALPSICISVKDDDVWIWAQLGADSMVVLQQRAYEILMTIMEGCHFARGGQLLLGEQNGELTLKALVHPDFLSDGEKFSTALNGFYNYLEVFSRSLM 134
2 -70.500d1ry9a_ d.198.1.1 (A:) Surface presentation of antigens protein SpaK (Spa15) {Shigella flexneri [TaxId: 623]}  ali model 3D-neighbors follow..  32  1MSNINLVQLVRDSLFTIGCPPSIITDLDSHSAITISLDSMPAINIALVNEQVMLWANFDAPSDVKLQSSAYNILNLMLMNFSYSINELVELHRSDEYLQLRVVIKDDYVHDGIVFAEILHEFYQRMEILNGVL. 133
3 -15.000d1jyoa_ d.198.1.1 (A:) Virulence effector SptP secretion chaperone SicP {Salmonella typhimurium [TaxId: 90371]}  ali model 3D-neighbors follow..  17  2.......QAHQDIIANIGEKLGLPLTFDDNNQCLLLLDSDIFTSIEAKDDIWLLNGMIIPLSPVCGDSIWRQIMVI---NGELAANNEGTLAYIDAAETLLLIHAITDLTNTYHIISQLESFVNQQEALKNIL. 124
4 -14.800d1s28a1 d.198.1.1 (A:3-130) AvrPphF ORF1, chaperone of AvrPphF ORF2 {Pseudomonas syringae pv. phaseolicola [TaxId: 319]}  ali model 3D-neighbors follow..  1.MKNSFDRLIDGLAKDYGMPGFPEKK-HEHEVYCFEFKEVSIRIYQDKFKWVYFLSDIGVIDN----LDSNACQSLLRLNEFNLRTPFFTVGLNEKKDGVVHTRIPLLNLDNVEMRRVFEALLNLSGEVKKTF. 127
5 -12.900d1xkpc1 d.198.1.1 (C:2-127) Chaperone protein YscB {Yersinia pestis [TaxId: 632]}  ali model 3D-neighbors follow..  12  2.......NLLKNLAASLGRKP----VADKQGVYRLTIDKH-LVMLAPHGSELVLRTPIDAPMLREGNNVNVTLLRSLMQALAWAKRYPQTLVLDDCGQLVLEARLRLQELDTHGLQEVINKQLALLEHLIPQL. 124
6 -12.500d4gf3a_ d.198.1.1 (A:) automated matches {Yersinia pestis [TaxId: 632]}  ali model 3D-neighbors follow..  2....TYSSLLEEFATELGLEEI---ETNELGHGAVTIDKIWVVHLAPINKELVAFMRAGILTGQSQ------LYDILRKNLFSPLSGVIRCALDKDDHWLLWSQLNINDTSGTQLASVLTSLVDKAVTLSCEP. 122
7 -11.800d3epua_ d.198.1.0 (A:) automated matches {Salmonella typhimurium [TaxId: 90371]}  ali model 3D-neighbors follow..  12  1.MYSRADRLLRQFSLKLNTDS----VFDENRLCSFIIDNRYRILLTSTNEYIMIYGFCGKPPDN-----NNLAFEFLNANLWFAENNGPHLCNNSQSLLLALNFSLNES-SVEKLECEIEVVIRSMENLYHIL. 126
8 -10.600d1jyaa_ d.198.1.1 (A:) YopE chaperone SycE {Yersinia pestis [TaxId: 632]}  ali model 3D-neighbors follow..  10  2....SFEQAITQLFQQLSLSIPD----TIEPVIGVKVGEFACHITEHPVGQILMFTLPSLDNNDEKET-----LLSHNIFSQDILKPILSWDEVGGHPVLWNRQPLNSL-DNNSLYTQLEMLVQGAERLQ.... 117
9 -9.480d1xkpb1 d.198.1.1 (B:2-122) Chaperone protein SycN {Yersinia pestis [TaxId: 632]}  ali model 3D-neighbors follow..  1.......SWIEPIISHFCQDLGVPTSSPLSPLIQLEMAQSGTLQLEQHGATLTLW-----LARSLAWHRCEDAMVKALTLTAAQKSGALPLRLGESQLVLFVSLDERSL-TLPLLHQAFEQLLRLQQEVLA... 121
10 -8.930d2plga1 d.198.1.2 (A:4-154) Uncharacterized protein Tll0839 {Synechococcus elongatus [TaxId: 32046]}  ali model 3D-neighbors follow..  20....NAVEIIETVISSLHQGDAPLVQTDSGKIWMFRYGSA-QLSGHTEEDFLTIWSPVLPLPVADELALYRKLLT-----LNWLTTFEAHFAIAEEQVQVVASRTLGGI-TAGEISRLITIVATLADDYDDALR 147

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Godzik A. cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences. Bioinformatics. 2006 May 26;