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Query: d2g0ta1 c.37.1.10 (A:1-338) Hypothetical protein TM0796 {Thermotoga maritima [TaxId: 2336]}, from SCOP207

Results of FFAS03 search in SCOP207
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MDLWKLYQPGTPAAIVAWGQLGTAHAKTTYGLLRHSRLFKPVCVVAEHEGKMASDFVKPVRYDVPVVSSVEKAKEMGAEVLIIGVSNPGGYLEEQIATLVKKALSLGMDVISGLHFKISQQTEFLKIAHENGTRIIDIRIPPLELDVLRGGIYRKKIKVVGVFGTDCVVGKRTTAVQLWERALEKGIKAGFLATGQTGILIGADAGYVIDAVPADFVSGVVEKAVLKLEKTGKEIVFVEGQGALRHPAYGQVTLGLLYGSNPDVVFLVHDPSRDHFESFPEIPKKPDFEEERRLIETLSNAKVIGGVSLNGGFETDLPVYDPFNTDDLDEMLERAMVWLast
1 -88.700d2g0ta1 c.37.1.10 (A:1-338) Hypothetical protein TM0796 {Thermotoga maritima [TaxId: 2336]}  ali model 3D-neighbors  100  1MDLWKLYQPGTPAAIVAWGQLGTAHAKTTYGLLRHSRLFKPVCVVAEHEGKMASDFVKPVRYDVPVVSSVEKAKEMGAEVLIIGVSNPGGYLEEQIATLVKKALSLGMDVISGLHFKISQQTEFLKIAHENGTRIIDIRIPPLELDVLRGGIYRKKIKVVGVFGTDCVVGKRTTAVQLWERALEKGIKAGFLATGQTGILIGADAGYVIDAVPADFVSGVVEKAVLKLEKTGKEIVFVEGQGALRHPAYGQVTLGLLYGSNPDVVFLVHDPSRDHFESFPEIPKKPDFEEERRLIETLSNAKVIGGVSLNGGFETDLPVYDPFNTDDLDEMLERAMVW 338
2 -20.500d1e8ca3 c.72.2.1 (A:104-337) UDP-N-acetylmuramyl tripeptide synthetase MurE {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  19  1........................................................................................................................................................PSDNLRLVGVTGTN---GKTTTTQLLAQWSQLLGEISAVMGTVGNGL------GKVIPTENTTGSAVDVQHELAGLVDQGATFCAMEVSSH-------GLVQHRVAALKFAASVF-TNLSRDHLDYHGD------MEHYEAAKWLLYSEHHCGQAIINADDEVGRRWLAKLPDA............ 152
3 -13.400d2x5oa2 c.72.2.1 (A:94-297) automated matches {Escherichia coli [TaxId: 668369]}  ali model 3D-neighbors follow..  16  10...........................................................................................................................................................QAPIVAITGSN---GKSTVTTLVGEMAKAAGVNVGVGGN--------------------------IGLPALMLLDDECELYVLELSS---------FQLETTSSLQAVAATI-LNVTEDHMDRYPF-----GLQQYRAAKLRIYENAKVCVVNADDA.......................... 122
4 -13.300d1nksa_ c.37.1.1 (A:) Adenylate kinase {Sulfolobus acidocaldarius [TaxId: 2285]}  ali model 3D-neighbors follow..  15  1............................................................................................................................................................MKIGIVTGIP-GVGKSTVLAKVKEILDNQGINNKIINYGDFMLATALKLGYAKDEKQKKLQIDAAKGIAEEARAGGEGYLFIDTHAVIRTPSLPGLPSYVITEINPSVIFLEADPKIILSRQKRDTTRNRNDYSDESVILETINFARYAATASAVLAGSTVKVIV--VEGDPSIAANEIIRS 192
5 -12.400d1khta_ c.37.1.1 (A:) Adenylate kinase {Methanococcus voltae [TaxId: 2188]}  ali model 3D-neighbors follow..  14  2.............................................................................................................................................................KVVVVTGVP-GVGSTTSSQLAMDNLRKEGVNYKMVSFGSVNLVSDRDQMRKMDPETQKRIQKMAGRKIAEMAKE--SPVAVDTHSTVSTPKLPGLPSWVLNELNPDLIIVVETTGDEILMRRMSDETRVRDLDTASTIEQHQFMNRCAAMSYGVLTGATVKIVQ--RNGLLDQAVEELTNV 188
6 -12.000d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  12  2............................................................................................................................................................IPLLAFAAWS-GTGKTTLLKKLIPALCARGIRPGLIKAGAAQTIVASQQRWALMTETPDEEELDLQFLASRMDTSKLDLILVEG---------------FKHEEIAKIVLFRDGAGHRPE--------------------ELVIDRHVIAVASDVPLNLDVALLDI---NDVEGLADFVVEW 164
7 -11.000d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]}  ali model 3D-neighbors follow..  10  3.............................................................................................................................................................KLYIITGP-AGVGKSTTCKRLAAQLDNS---AYIEGDIINHMVVGGYRPPWESDELLALTWKNITDLTVNFLLAQNDVVLDYIAFPDEAEALAQTVQAKVDDVEIRFIILWTNREELLRRDALRKKDEQMGERCLELVEEFESKGIDERYFYNTSHL------------QPTNLNDIVKNL 167
8 -10.600d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]}  ali model 3D-neighbors follow..  16  1............................................................................................................................................................MNVWQVVGYK-HSGKTTLMEKWVAAAVREGWRVGTV--ERAGAVATAVEGDGLLQLHLRRPLWRLDDVLALYAPLRLDLVLVEG---------------YKQERHPKVVLVRSEEDWASLQHLANI--------------------RAVIAWEPLEGPLAHPVFSL---ADDDEYIPWLMNE 161
9 -10.100d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium pasteurianum [TaxId: 1501]}  ali model 3D-neighbors follow..  10  1............................................................................................................................................................MRQVAIYGKG-GIGKSTTTQNLTSGLHAMGKTIMVVGCDPKALLGGLAQKSVLDTLREEGEDVELDSILKEAYTDDLDYVFYDVLGDVVCGGF----AMPIREGKAQEIYIVASGE------MMALYAANNISKGIQKYAKSGGVRLGGIICNSRKVANEYELLDAFAKELGSQLIHFV... 208
10 -10.000d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  14  1............................................................................................................................................................ARHVFLTG-PPGVGKTTLIHKASEVLKSSGVPVDGFYTEEV-----RQGGRRIGFDVVTLSGTRGPLSRVGLEPPPGKRECRVGQYVVDLTSFEQLALPVLRNAGQRVCVI---------------DEIGKMELFSQVRQTLSTPGTIILGTIPVPKGKPLALVEEVTKENRNHLLPDIVTC 183
11 -9.990d1e8ca1 c.98.1.1 (A:3-103) UDP-N-acetylmuramyl tripeptide synthetase MurE {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  4..................................................RDLLAPWVPDAPSRALREMTLDSRVAAAGDLFVAVV----GHQADGRRYIPQAIAQGVAAIIAEAKDEATDGEIREMHGVPVIYLSQLNERLSALAGRFYH........................................................................................................................................................................................... 100
12 -9.920d1wcv1_ c.37.1.0 (1:) automated matches {Thermus thermophilus [TaxId: 262724]}  ali model 3D-neighbors follow..  13  1...........................................................................................................................................................KVRRIALANQKGGVGKTTTAINLAAYLARLGKRVLLVDLDPQGNATSGLGVRAERGVYHLLQGEPLEGLVHPLRDEGYDLVLLDAPPSL-----SPLTLNALAAA--EGVVVPVQAE------YYALEGVAGLLATLEEVRAGLNPRLILVTMYDGRTLLAQQVEAQLRAHFGEKVFWTVIP. 203
13 -9.690d3kb2a1 c.37.1.1 (A:2-165) automated matches {Bacillus subtilis [TaxId: 1423]}  ali model 3D-neighbors follow..  10  1.............................................................................................................................................................TLIILEGPD-CCFKSTVAAKLSKEL---KYPIIKGSSFELAKSGNEKLFEHFNKLADEDNVIIDRFVYSNLVYAK----KFKDYSILTERQLRFIEDKI----AKAKVVYLHADPSVIKK--DEYIEGKDIDSILELYREVMSNAGLHTYSWDTGQW------------SSDEIAKDIIF. 161
14 -9.620d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}  ali model 3D-neighbors follow..  18  12..............................................................................................................................................................LWFLVGLQ-GSGKTTTAAKLALYYKGKGRRPLLVAAEQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKARLEARDLILVDTAGRLIDEPLMGELARLKEVLGPDEVLLVLDAM---QEALSVARAFDEKVGVTGLVLTKLDGDARGGAALSARHVTGKPIPEGLEPFYPERLAGRILGM 206
15 -9.610d2f1ra1 c.37.1.0 (A:4-161) automated matches {Archaeoglobus fulgidus [TaxId: 2234]}  ali model 3D-neighbors follow..  15  1..............................................................................................................................................................ILSIVGTS-DSGKTTLITRMMPILRERGLRVAVVKRHAHG-------DFEIDKEGKDS---------WKIYNSGADVVIASPVKLAFEEGNDLDWIYERYLSDYDLVIT---------EGFSK-AGKDRIVVVKKPEEVEHFRQGRILAVVCDERVDGHKWFRR---DEVERIAEFILSL 156
16 -9.490d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]}  ali model 3D-neighbors follow..  2.........................................................................................................................................................QPKGINILITGT-PGTGKTSMAEMIAAELDGFQHLEVGKLVKENHFYTEYDTELDTHIIEEKDEDRLLDFMEPIMVSRGNHVVDYHSSELFPERWFHMV---VVLHTSTEVLFERLTKRQYSEAKRAENMEAEIQCICEEEARDAYEDDIVLVRENDTLEQM---------AATVEEIRERVEVL 173
17 -9.330d1byia_ c.37.1.10 (A:) Dethiobiotin synthetase {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  15  4...............................................................................................................................................................YFVTGTDTEVGKTVASCALLQAAKAAGYRTAGYKPVASGSEKTPEGLRNSDALTSPHIISAQEGRPIESLEQQADWVLVEGAGGWFTPSDTFTFADWVTQEQLPVILVV--------------VKLGCINHAMLTAQVIQHAGTLAGWVANDTRMIPAPLLGEIPWLAENPENAATGKY 218
18 -9.240d3eaga2 c.72.2.0 (A:93-323) automated matches {Neisseria meningitidis [TaxId: 122586]}  ali model 3D-neighbors follow..  22  16...............................................................................................................................................................LGVAGTH---GKTTTASMLAWVLEYAGLAPGFL-----GVPENFGVSARLPQTPRQDPNSQSPFFV--IEADEYDTAFFDKRSKFVH-------------YRPRTAVL-NNLEFDHADIFADLGAI------QTQFHYLVRTVPSEGLIVCNGRQQSL..................... 145

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Damiano JS, Stehlik C, Pio F, Godzik A., Reed JC. CLAN, a novel human CED-4-like gene. Genomics. 2001 Jul;75(1-3):77-83.