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Query: d2g3wa1 c.52.1.33 (A:4-182) Hypothetical protein XAC2396 {Xanthomonas axonopodis pv. citri [TaxId: 92829]}, from SCOP207

Results of FFAS03 search in SCOP207
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst TATVRRAELQISDMDRGYYANHSLTLAQHPSETDERLMVRLLAFALFADDRLEFGRGLSNDDEPDLWRRDYTGDPDLWIDLGQPDESRVRKACNRSREAVVIGYGGQATETWWKKHANAMGRYRNLRVIELDSQATEALGALIQRGMRFDVIIQDGEVQMLADHGSVTLTPMVRQAPAELast
1 -93.200d2g3wa1 c.52.1.33 (A:4-182) Hypothetical protein XAC2396 {Xanthomonas axonopodis pv. citri [TaxId: 92829]}  ali model 3D-neighbors  100  1TATVRRAELQISDMDRGYYANHSLTLAQHPSETDERLMVRLLAFALFADDRLEFGRGLSNDDEPDLWRRDYTGDPDLWIDLGQPDESRVRKACNRSREAVVIGYGGQATETWWKKHANAMGRYRNLRVIELDSQATEALGALIQRGMRFDVIIQDGEVQMLADHGSVTLTPMVRQAPAE 179
2 -89.300d3c0ua1 c.52.1.0 (A:2-180) automated matches {Escherichia coli K-12 [TaxId: 83333]}  ali model 3D-neighbors follow..  39  3KATIYKATVNVADLDRNQFLDASLTLARHPSETQERMMLRLLAWLKYADERLQFTRGLCADDEPEAWLRNDHLGIDLWIELGLPDERRIKKACTQAAEVALFTYNSRAAQIWWQQNQSKCVQFANLSVWYLDDEQLAKVSAFADRTMTLQATIQDGVIWLSDDKNNLEVNLTAWQQP.. 179
3 -86.600d2ot9a1 c.52.1.33 (A:2-180) Hypothetical protein PSPTO1487 {Pseudomonas syringae pv. tomato [TaxId: 323]}  ali model 3D-neighbors follow..  32  3PSTTYKFELNLTDLDRGVYESVKQTIARHPSETEERMTVRLLAYAFWYNEQLAFGRGLSDVDEPALWEKSLDDRVLHWIEVGQPDADRLTWCSRRTERTSLLAY--GSLRVWEGKVIPAIKNLKNVNIAAVPQDVLEVLAKDMPRVIKWDVMISEGTVFVTDDRGQHEVQLQWLTGER. 178
4 -7.120d2qalp1 d.27.1.1 (P:1-82) Ribosomal protein S16 {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  13  2......VTIRLARHGAKKRPFYQVVVADSRNARNGRFIERVGFF------------NPIASEKEEGTRLDLD-RIAHWVGQGATISDRVAALIKEVNKAA............................................................................... 82
5 -6.820d3bn0a1 d.27.1.1 (A:2-102) Ribosomal protein S16 {Aquifex aeolicus [TaxId: 63363]}  ali model 3D-neighbors follow..  8  2......VRIRLAKFGRKHHPIYRIVVMDAKSPREGKYIDILGTYDPKRKVLINVYPE----------------KVKEWVLKGVELSHRAKAILWNH................................................................................... 75
6 -6.740d1m0da_ c.52.1.17 (A:) Endonuclease I (Holliday junction resolvase) {Bacteriophage T7 [TaxId: 10760]}  ali model 3D-neighbors follow..  8  1..........................SGLEDKVSKQLESKGIKFEYEEWKVPYVIPASNHTYTPDFLLPN-----GIFVETESDDRKKHLLIREQHPELDIRIVFSSSRTKLYKGSPTSYGEFCEKHGIKFADKLIAEWIKEPKKEVPFDRLKRK........................ 129
7 -6.370d1fjgp_ d.27.1.1 (P:) Ribosomal protein S16 {Thermus thermophilus [TaxId: 274]}  ali model 3D-neighbors follow..  5  2......VKIRLARFGSKHNPHYRIVVTDARRKRDGKYIEKIGYYDPRKTTPDWLKVD--------------VERARYWLSVGAQPTDTARRLLRQA................................................................................... 77
8 -6.130d3gp9a1 d.58.6.1 (A:2-131) automated matches {Acanthamoeba polyphaga mimivirus [TaxId: 212035]}  ali model 3D-neighbors follow..  9  8..............................................................KPDAFERSLVAEIMGRIEKKNFKIVSMKFWSKAPRNLIEQHYKEHSEQSYFNDNCDFMVSGPIISIVYEGTDAISKIRRLQGNILDLANDIRENLIHASDSEDSAVDEISIWFPET. 130
9 -5.740d2cb8a_ a.11.1.1 (A:) automated matches {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  11  2...............QAEFEKAAEEVRHLKTKPSDEEMLFI--YGHYKQA----TVGDINTERPGMLDFTGKAKWDAWNELKGTSKEDAMK........................................................................................ 71
10 -5.640d2b5ga_ d.108.1.1 (A:) Diamine acetyltransferase 1 {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  12  32.....QVILTEKDLLEDGFGEHHCLVAEVPKEHWTPEGHSIVGFAMYYFTYDPWIGKL---YLEDFFVMSDYRG-----GIGSEILKNLSQVAMRCRHFLVAEWNEPSINFYKRRGASDLSSEEGWRLFKIDKEYLLKMAT...................................... 168
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 1 0 5   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Godzik A. cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences. Bioinformatics. 2006 May 26;