Scheduled maintenance will begin on May 30th, 2025. Server will be temporarily unavailable — learn more.
current user: public
If you have questions about the server, please let us know.

Query: d2gf2a1 c.2.1.0 (A:41-201) automated matches {Human (Homo sapiens) [TaxId: 9606]}, from SCOP207

Results of FFAS03 search in SCOP207
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130    .  140    .  150    .  160
# Score Template Links and tools%idFirst PVGFIGLGNMGNPMAKNLMKHGYPLIIYDVFPDACKEFQDAGEQVVSSPADVAEKADRIITMLPTSINAIEAYSGANGILKKVKKGSLLIDSSTIDPAVSKELAKEVEKMGAVFMDAPVSGGVGAARSGNLTFMVGGVEDEFAAAQELLGCMGSNVVYCGALast
1 -80.700d2gf2a1 c.2.1.0 (A:41-201) automated matches {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors  100  1PVGFIGLGNMGNPMAKNLMKHGYPLIIYDVFPDACKEFQDAGEQVVSSPADVAEKADRIITMLPTSINAIEAYSGANGILKKVKKGSLLIDSSTIDPAVSKELAKEVEKMGAVFMDAPVSGGVGAARSGNLTFMVGGVEDEFAAAQELLGCMGSNVVYCGA 161
2 -78.300d5je8a1 c.2.1.0 (A:1-163) automated matches {Bacillus cereus [TaxId: 226900]}  ali model 3D-neighbors follow..  36  3KIGFIGLGNMGLPMSKNLVKSGYTVYGVDLNKEAEASFEKEGGIIGLSISKLAETCDVVFTSLPSPRAVEAVYFGAEGLFENGHSNVVFIDTSTVSPQLNKQLEEAAKEKKVDFLAAPVSGGVIGAENRTLTFMVGGSKDVYEKTESIMGVLGANIFHVS. 162
3 -78.000d3ws7a1 c.2.1.0 (A:1-161) automated matches {Pyrobaculum calidifontis [TaxId: 410359]}  ali model 3D-neighbors follow..  37  2RVGFIGLGIMGGPMATHLLKAGFLAAVYNRTREKTKPFAEAGVYVAESPADLAKRVDVVIVMVSDAPDVEQVLFGPSGVVEGARPGLIVVDMSTNSPDWARKFAERLAQYGIEFLDAPVTGGQKGAIEGTLTIMVGGKEELFHRLLPIFKAMGRDIVYMG. 161
4 -77.700d2uyya1 c.2.1.0 (A:262-429) automated matches {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  26  8KIGFLGLGLMGSGIVSNLLKMGHTVTVWNRTAEKCDLFIQEGARLGRTPAEVVSTCDITFACVSDPKAAKDLVLGPSGVLQGIRPGKCYVDMSTVDADTVTELAQVIVSRGGRFLEAPVSGNQQLSNDGMLVILAAGDRGLYEDCSSCFQAMGKTSFFLG. 167
5 -73.900d3g0oa1 c.2.1.0 (A:6-169) automated matches {Salmonella typhimurium [TaxId: 602]}  ali model 3D-neighbors follow..  29  3HVGIVGLGSMGMGAARSCLRAGLSTWGADLNPQACANLLAEGACAAASAREFAGVVDALVILVVNAAQVRQVLFGEDGVAHLMKPGSAVMVSSTISSADAQEIAAALTALNLNMLDAPVSGGAVKAAQGEMTVMASGSEAAFTRLKPVLDAVASNVYRIS. 163
6 -73.900d4dlla1 c.2.1.0 (A:29-190) automated matches {Polaromonas sp. [TaxId: 296591]}  ali model 3D-neighbors follow..  29  5KITFLGTGSMGLPMARRLCEAGYALQVWNRTPARAASLAALGATIHEQARAAARDADIVVSMLENGAVVQDVLFA-QGVAAAMKPGSLFLDMASITPREARDHAARLGALGIAHLDTPVSGGTVGAEQGTLVIMAGGKPADFERSLPLLKVFGR-ATHVG. 162
7 -66.800d2cvza2 c.2.1.6 (A:2-157) Hydroxyisobutyrate dehydrogenase {Thermus thermophilus [TaxId: 274]}  ali model 3D-neighbors follow..  31  2KVAFIGLGAMGYPMAGHLARRFPTL-VWNRTFEKALRHQEEFGSEA-VPLERVAEARVIFTCLPTTREVYEVA---EALYPYLREGTYWVDATSGEPEASRRLAERLREKGVTYLDAPVSGGTSGAEAGTLTVMLGGPEEAVERVRPFL-AYAKKVVHVG. 155
8 -59.000d4gwga1 c.2.1.0 (A:1-176) automated matches {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  16  4DIALIGLAVMGQNLILNMNDHGFVVCAFNRTVSKVDDFLANEAKGAQSLKEMVSKLKKPRRIILLVKAGQAVDDFIEKLVPLLDTGDIIIDGGNSEYRDTTRRCRDLKAKGILFVGSGVSGGEEGARYGP-SLMPGGNKEAWPHIKTIFQGIAAKVGTGEP 168
9 -46.900d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Methanobacterium thermoautotrophicum [TaxId: 145262]}  ali model 3D-neighbors follow..  20  2RVGFIGFGEVAQTLASRLRSRGVEVVTSLEGRSPSTIERARTVGVTETSEEDVYSCPVVISAVTPGVALGAARRAGRHV------RGIYVDINNISPETVRMASSLIEKGG--FVDAAIMGSVRRKGADIRIIASGRDAEEFMK----LNRYGLNIEVRGR 150
10 -44.000d4ypoa1 c.2.1.0 (A:1-180) automated matches {Mycobacterium tuberculosis [TaxId: 1773]}  ali model 3D-neighbors follow..  17  16KVGVIGYGSQGHAHSLSLRDSGVQVRVGLKQGSRSRPKVEEQGLDVDTPAEVAKWADVVMVLAPDTAQAEIFA---GDIEPNLKPGDALFFGHGLNVHFGLIKPPADVAVAMVAPKGPGHLVRRQFVDGLVAVEQDPRGDGLALALSYAKAIGGTRAGVIK 178
11 -35.900d2i76a2 c.2.1.6 (A:2-154) Hypothetical protein TM1727 {Thermotoga maritima [TaxId: 2336]}  ali model 3D-neighbors follow..  11  2.LNFVGTGTLTRFFLECLKDRYEIGYILSRSIDRARNLAEVYGGKAATLEKHPELNGVVFVIVPDR-YIKTV------ANHLNLGDAVLVHCSGF---LSSEIFKKSGRASIHPNFSFSSLEKALEMKDQIVFGLEGDERGLPIVKKIAEEISGKYFVIPS 151
12 -20.500d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. PCC 6803 [TaxId: 1148]}  ali model 3D-neighbors follow..  16  2KIGVVGLGLIGASLAGDLRRRGHYLIGVSRQQSTCEKAVERQLDEAGQDLSLLQTAKIIFLCTPIQLILPTL----EKLIPHLSPTAIVTDVASVK----TAIAEPASQLWSGFIGGPMAGTAAQGIDGALTPTEYTDPEQLACLRSVLEPLGVKIYLC.. 165
13 -19.600d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]}  ali model 3D-neighbors follow..  16  11KIVIVGYGKLGGLFARYLRASGYPISILDREDWA-------------VAESILANADVVIVSVPINLTLETI----ERLKPYLTENMLLADLTSVKREPLAKMLEVHTGAVLGL---PMFGADIASMAKQVVVRCGRFPERYEWLLEQIQIWGAKIYQT.. 152
14 -19.300d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]}  ali model 3D-neighbors follow..  21  2KIGIIGVGKMASAIIKGLKQTPHELIISGSSLERSKEIAEQALPYAMSHQDLIDQVDLVILGIKPQL---------ETVLKPLHFKQPII--SMAAGISLQRLATFVGQDLPLLRIMPNMNAQILQSSTALTGNALVSQELQARVRDLTDSFGSTF..... 148
15 -18.800d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeoglobus fulgidus [TaxId: 2234]}  ali model 3D-neighbors follow..  14  2RVALLGTGNLGKGLALRLATLGHEIVVGSRREEKAEAKAAEASITGMKNEDAAEACDIAVLTIPWEHAIDTA-------LKNILREKIVVSPLVPVSRGAKGFTYSSERSAAEIVAEVLESEKVVSALHTIVPVCGDDDESKKVVMSLISEIGLRPLDAGP 181
16 -18.500d3fr7a1 c.2.1.0 (A:86-307) automated matches {Oryza sativa [TaxId: 39947]}  ali model 3D-neighbors follow..  16  42QIGVIGWGSQGPAQAQNLRDSLAEAKSDRKGSKSFDEARAAGFGTLGDIWETVSGSDLVLLLISDAAQADNY----EKIFSHMKPNSILGLSHGFLLGHLQSAGLDFPKNISVIAVCPKGMGPSAGINSSFAVHQDVDGRATDVALGWSVALGSP...... 216
17 -17.900d3daga1 c.2.1.6 (A:1-242) 5,10-methenyltetrahydromethanopterin hydrogenase, HMD {Methanocaldococcus jannaschii [TaxId: 2190]}  ali model 3D-neighbors follow..  12  63.SDPCFAEEPGLVVIDEFPKEVMEAHLSGNPESIMPKPEDVGLKVTSDDREAVEGADIVITWLPKGNKQPDII---KKFADAIPEGAIVTHACTIPTTKFAKIFKDLGREDLNITSYPGCVPEMKGQV--YIAEGYASEEAVNKLYEIGKIARGKAFKM.. 241
18 -17.700d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}  ali model 3D-neighbors follow..  17  3NVLIVGVGFMGGSFAKSLRRSGFKIYGYDINPESISKAVDLGIGTTSIAKVEDFSPDFVMLSSPVRTFREIA----KKLSYILSEDATVTDQGSVKGKLVYDLENILGKRFVG----PIAGTEKSGVEYSLTPTKKTDKKRLKLVKRVWEDVGGVVEYM.. 171
19 -16.600d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]}  ali model 3D-neighbors follow..  14  46HVGTVAAGRIGLAVLRRLAPFDVHLHYTDRHRLPESVEKELNLTWHATREDMYPVCDVVTLNCPLHPETEHMINDET--LKLFKRGAYIVNTARGKLCDRDAVARALESGRLAGYAGDVWFPQPAPKDHPWRTM........................... 177
20 -16.400d1evya2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]}  ali model 3D-neighbors follow..  13  9KAVVFGSGAFGTALAMVLSKKCREVCVWHMNEEEVRLVNEKNITFTSDVEKAYNGAEIILFVIPTGGNLIAYAKEKQVPVLVCTKG---IERSTLK-FPAEIIGEFLPSPLLSVLAGPSFAIEVATGVFTCVSIASADINVARRLQRIMST.......... 179
21 -16.300d3tria1 c.2.1.0 (A:2-162) automated matches {Coxiella burnetii [TaxId: 777]}  ali model 3D-neighbors follow..  16  4NITFIGGGNMARNIVVGLIANGYRICVTNRSLDKLDFFKEKGVHTTQDNRQGALNADVVVLAV-KPHQIKMVC---EELKDILSETKILV-ISLAVGVTTPLIEKWLGKASRIVRAMPNTPSSVRAGATGLFANETVDKDQKNLAESIMRAVGLVI..... 158
22 -16.200d5bsea1 c.2.1.0 (A:3-169) automated matches {Medicago truncatula [TaxId: 3880]}  ali model 3D-neighbors follow..  16  10TLGFIGAGKMAESIAKGAVRSGVRIKTAIHSNPARRTAFESGITVLSSNDDVVRDSNVVVFSV-KPQLLKDVV---LKLKPLLTKDKLLV---SVAAGIKMKDLQEWAGHERFIRVMPNTAATVGEAASVMSLGGAATEEDANLISQLFGSIGKIW..... 163
23 -16.200d2izza1 c.2.1.0 (A:1-164) automated matches {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  12  2SVGFIGAGQLAFALAKGFTAAGVKIMASSPDMDLATVSALRGVKLTPHNKETVQHSDVLFLAV-KPHIIPFIL---DEIGADIEDRHIVVSCAAGVTISSIEKKLSAFRPAPRVIRCTNTPVVVREGATVYATGTHAQVEDGRLMEQLLSSVGFCT..... 160
24 -16.100d3k96a1 c.2.1.0 (A:3-180) automated matches {Coxiella burnetii [TaxId: 227377]}  ali model 3D-neighbors follow..  14  5PIAILGAGSWGTALALVLARKGQKVRLWSYESDHVDEMQAETLKAYCDLKASLEGVTDILIVVP-SFAFHEVI---TRMKPLIDAKTRIAWGTK-SRLLHEVVATELGQVPMAVISGPSLATEVAANLPTAVSLASNNSQFSKDLIERLHG.......... 169
25 -16.000d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}  ali model 3D-neighbors follow..  12  2RISIFGLGYVGAVCAGCLSARGHEVIGVDVSSTKIDLINQGKSSGTTDFKKAVLDSDVSFICVGTPGYIETVCREIGFAIREKSERHTVVVRSTVLPGTVNNVVIPLIEDCSGKVDFGVGTNPEFLRESTAITVIGEDKQTGDLLEEIYRELDAPIIRKT. 202
26 -15.800d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}  ali model 3D-neighbors follow..  27  3TYAVLGLGNGGHAFAAYLALKGQSVLAWDIDAQRIKEIQDRGALLTSDIGLAVKDADVILIVVPAIHHASIA----ANIASYISEGQLII....................................................................... 103
27 -15.400d1z82a1 c.2.1.0 (A:2-166) automated matches {Thermotoga maritima [TaxId: 243274]}  ali model 3D-neighbors follow..  13  3RFFVLGAGSWGTVFAQMLHENGEEVILWARRKEIVDLINVSHTSRATNDLEEIKKEDILVIAIPVQREHLLRLPVKPSMVLNLSKG---IEIKTG--KRVSEIVEEILGCPYAVLSGPSHAEEVAKKLPTAVTLAGENSKELQKR................ 154
28 -15.400d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]}  ali model 3D-neighbors follow..  16  2IVSILGAGAMGSALSVPLVDNGNEVRIWGTEFDTGVKLNGVEIFWPEQLEKCLENAEVVLLGVS-TDGVLPVMSRILPYLKDISKGLIDFDNSVLTVPEAVWRLKHDLRERTVAITGPAIAREVAKRMPTTVVFSSPSESSANKMKEIFET.......... 171
29 -15.300d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]}  ali model 3D-neighbors follow..  12  49TLGIYGFGSIGQALAKRAQGFDMDIDYFDTHRASSSDEASYQATFHDSLDSLLSVSQFFSLNAPSTPETRYFFNKAT--IKSLPQGAIVVNTARGDLVDNELVVAALEAGRLAYAGFDVFAGEPNINEGYYDL............................ 179
30 -15.000d1xc2a3 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]}  ali model 3D-neighbors follow..  16  2NVYFLGGGNMAAAVAGGLVKQGYRIYIANRGAEKRERLEKELGVETSATLPELHSDDVLILAVKPQD---------EAACKNIRTNGALV-LSVAAGLSVGTLSRYLGGTRRIVRVMPNTPGKIGLGVSGMYAEAEVSETDRRIADRIMKSVGLTV..... 149
31 -14.700d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Fungus (Magnaporthe grisea) [TaxId: 148305]}  ali model 3D-neighbors follow..  13  4SVLMLGSGFVTRPTLDVLTDSGIKVTVACRTLESAKKLSAGDVNDDAALDAEVAKHDLVISLIPYTFHATVI--------SAIRQKKHVVTTSYVSPAM-MELDQAAKDAGITVM------NEIGXYSAMAKLVGVPCAVAVKFVLDGTISDR........ 151
32 -14.500d4e12a1 c.2.1.0 (A:1-189) automated matches {Acinetobacter baylyi [TaxId: 202950]}  ali model 3D-neighbors follow..  13  6NVTVLGTGVLGSQIAFQTAFHGFAVTAYDINTDALDAAKKR-IRYSDDLAQAVKDADLVIEAVPESLDLKRDIYTK---LGELAPAKTIFATNSSTSDLVGYTGRGDKFLALHFANHVWVNNTAEVMGTTKT-----DPEVYQQVVEFASAIGMVPIEL.. 184
33 -14.400d2rcya1 c.2.1.0 (A:2-156) automated matches {Plasmodium falciparum [TaxId: 36329]}  ali model 3D-neighbors follow..  17  5KLGFMGLGQMGSALAHGIANANINLFYYGPSKKNT------TLNYMSSNEELARHCDIIVCAV-KPDIAGSVLNN----IKPYLSSKLLI--SICGGLNIGKLEEMVGSENKIVWVMPNTPCLVGEGSFIYCSNKNVNSTDKKYVNDIFNSCGI....... 149
34 -14.400d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]}  ali model 3D-neighbors follow..  20  52.LGIIGLGRVGQAVALRAKAFGFNVLFYDPYLSD-GVERALGLQRVSTLQDLLFHSDCVTLHCGLNEHNHHLINDFT--VKQMRQGAFLVNTARGGLVDEKALAQALKEGRIRGAALDV.......................................... 166
35 -14.300d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]}  ali model 3D-neighbors follow..  13  2KIAVAGSGYVGLSLGV-LLSLQNEVTIVDILPSKVDKIKSKQLSIKATLDSKAAYKEAELVIIATPTNYNQHVETVIKEVLSVNSHATLIIKSTIPIGFITEMRQKFQT--DRIIFSP-ESKALYDNLYPSRIIVSCEENDSPKVKADA............ 174
36 -14.100d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Pyrobaculum aerophilum [TaxId: 13773]}  ali model 3D-neighbors follow..  13  44KVAVLGLGEIGTRVGKILAALGAQVRGFSRTPKEGP------WRFTNSLEEALREARAAVCALPLNKHTRGLVKYQH--LALMAEDAVFVNVGRAEVLDRDGVLRILKERPQFIFASDV.......................................... 154
37 -14.000d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  14  26VAVVAGYGDVGKGCAQALRGFGARVIITEIDPINALQAAMEGYEVT-TMDEACQEGNIFVTTTGCIDIILG------RHFEQMKDDAIVCNIGHFDVEIDVKWLNENAVEK.................................................. 129
38 -13.300d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]}  ali model 3D-neighbors follow..  20  46.VGVVGTGHIGQVFMQIMEGFGAKVITYDIFRN--PELEKKGYYVD-SLDDLYKQADVISLHVPDVPANVHMINDES--IAKMKQDVVIVNVSRGPLVDTDAVIRGLDSGKIFGYAMDV.......................................... 158
39 -13.200d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  16  6HVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDILAKSKKG-IATSTDAASVVHSTDLVVEAIVENLKVKNELFKR---LDKFAAEHTIFASNTSSLQITSIANATTRQDGLHFFN-PVP---------KLVEVIKTSQKTFESLVDFSKALGKHPVSCK. 189
40 -13.000d4j0ea1 c.2.1.0 (A:1-198) automated matches {Nematode (Caenorhabditis elegans) [TaxId: 6239]}  ali model 3D-neighbors follow..  18  13NVAIVGSGQMGSGIAQVTASSGFNVMLADVNKKALDRAMKA-IKTCNNVSTAVADADLIIEAAIENIDLKRGIFAQ---IEQSCKKDSILTTNTSSEDVAKGLQDKTRFGGLHFFN-PVP---------KLLEVIRSSDETYATLIKFGTAVGKTTVACK. 195
41 -12.800d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  19  46KLGIIGYGHIGTQLGILAESLGMYVYFYDIENKLPLGN----ATQVQHLSDLLNMSDVVSLHVPENPSTKNMMGAKE--ISLMKPGSLLINASRGTVVDIPALADALASKHLAGAAIDV.......................................... 158
42 -12.300d1saya1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}  ali model 3D-neighbors follow..  18  34KVVILGGGVVGTEAAKMAVGLGAQVQIFDINVERLSYLETLFGSRVAEIETAVAEADLLIGAVLVPGRRAPILVPAS-LVEQMRTGSVIVDVAV................................................................... 133
43 -11.500d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}  ali model 3D-neighbors follow..  19  31RVLVFGVGVAGLQAIATAKRLGAVVMATDVRAATKEQVESLGGKFITVDLKELVKTDIAITTALIPGKPAPVLITEE-MVTKMKPGSVIIDLAV................................................................... 152
44 -11.400d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}  ali model 3D-neighbors follow..  21  47.VGVVGLGRIGQLVAQRIAAFGAYVVAYD--PYVSPARAAQLGIELLSLDDLLARADFISVHLPKTPETAGLIDKEA--LAKTKPGVIIVNAARGGLVDEAALADAITGGHVRAAGLDV.......................................... 160
45 -11.400d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]}  ali model 3D-neighbors follow..  14  6QAAVLGAGIMGGGIAYQSASKGTPILMKDINEHGIEQGLAENGIRPTLSYGDFGNVDLVVEAVVENPKVKQAVLAE---VENHVREDAILASNTSTISISLLAKALKRPEGMHFFN-PVH---------PLVEVIRGSDLAVATTVAYAKKMGKNPIVVN. 183
46 -11.300d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]}  ali model 3D-neighbors follow..  14  29TVLVQGLGAVGGSLASLAAEAGAQLLVADTDTERVAHAVALGHTAVALEDVLSTPCDVFAPC------------AMGGVITTEVARTLVVAGAANNVIADEAASDILHARGILYADFVANAG....................................... 142
47 -11.200d1yjqa2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  10  2KITVLGCGALGQLWLTALCKQGHEVQGWLRVPQPYCSVNLVETSLTANDPDFLATSDLLLVTLKAWQVSDAVTLPVTTPILLIHNG---MGTIEELQNIQQPLLMGTTTHAARRDGNVI------IHVANGITHIGPARQQDGDYSYLADILQT....... 158
48 -11.000d1x0va1 c.2.1.0 (A:2-193) automated matches {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  17  4KVCIVGSGNWGSAIAKIVGGNDPRVTMWVFEEDIGGK-LPPNVVAVPDVVQAAEDADILIFVVPH-QFIGKICLKANATGISLIKG---VDEGPNGLKLISEVIGERLGIPMSVLMGANIASEVADEKFCETTIGCKDPAQGQLLKELMQT.......... 182
49 -10.400d1nvmb1 c.2.1.3 (B:1-131,B:287-312) Acetaldehyde dehydrogenase (acylating) {Pseudomonas sp. [TaxId: 306]}  ali model 3D-neighbors follow..  19  6KVAIIGSGNIGTDLMIKVLRNAKYLEMGDAASDGLARAQRMGVTTTYAGVEGLADIDFVFDATSASAHVQNEA-----LLRQAKPGIRLIDLTAIGPYCVPVVNLEEHLGKLNV............................................... 127
50 -10.400d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]}  ali model 3D-neighbors follow..  18  3KIGIIGLGNVGAAVAHGLIAQGVDYVFIDANEAKVKANLEAHGNIVINDWAALADADVVISTLGNIKLQQD------------NPTGDRFAELKFTSSMVQSVGTNLKESGLVVISNPVD......................................... 126
51 -10.400d1tlta1 c.2.1.3 (A:5-127,A:268-308) Virulence factor MviM {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  10  3RIGVVGLGGIAQKAWLPVLAA---QGAWSPTRAKALPICESRIPYADSLSSLAASCDAVFVHSSTASHFDVV-------STLLNAGVVCVDKPAENLRDAERLVELAARKKLTLM.............................................. 116
52 -10.400d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  8  5KIAIFGTGQTGLTTLAQAVQAGYEVTVLVRDSSRLPSEGPRPA-------------HVVVGDVLQAADVDKTVAGQDAVIVLLGTRN--LSPTTVMSEGARNIVAAMKAHGVDKV-VACTSAFLLWDPTKVPPRLQAVTDDHIRMHKVLRESG........ 143
53 -10.300d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]}  ali model 3D-neighbors follow..  12  6RIAVVGGSISGLTAALMLRDAGVDVDVYERSPQPLSGF-GTGIVVQPELVHYLLEQGVELDSISVPSSSMEYVDALTGRVGSVPADWRFTSYDSIYGGLYELFGPERYHTSKCLVGLSQDSETVQMREANWVIGADGGASVVRK................. 156
54 -10.200d2dapa1 c.2.1.3 (A:1-118,A:269-320) Diaminopimelic acid dehydrogenase (DAPDH) {Corynebacterium glutamicum [TaxId: 1718]}  ali model 3D-neighbors follow..  10  5RVAIVGYGNLGRSVEKLIAKQ--DMDLVGIFSRRATLDTKTPVFDVADVDKHADDVDVLFLCMGSATDIPEQTVDTYDNHRDIPRHRQVMNEAATAAGNVALVSTGXRNPDFTASSQIAFGRAAHR................................... 138
55 -10.200d3vpxa2 c.2.1.0 (A:145-363) automated matches {Sporosarcina psychrophila [TaxId: 1476]}  ali model 3D-neighbors follow..  19  31TVAVQGVGNVAYALCEYLHEEGAKLIITDINEEAVQRAVDAGATAVGINEIYSQEADIFAPC------------ALGAIINDETIPQLVIAGSANNQLKETRHGDLIHEMGIVYADYVINSG--GVINVADELDGYNRERALKRVEGIYDVIGK....... 175
56 -10.100d2g1ua_ c.2.1.0 (A:) automated matches {Thermotoga maritima [TaxId: 2336]}  ali model 3D-neighbors follow..  13  6YIVIFGCGRLGSLIANLASSSGHSVVVVDKNEYAFHRLNSEAAEFETLKECGMEKADMVFAFTNDD---------STNFFISMNARYMFNVENVIARVYDPEKIKIFEENGIKTICPAVLMI....................................... 127
57 -10.000d2hmta_ c.2.1.9 (A:) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}  ali model 3D-neighbors follow..  18  3QFAVIGLGRFGGSIVKELHRMGHEVLAVDINEEKVNAYASYATHAVIANAT-IRNFEYVIVAIGANIQASTLTTLLLKELDIPN---------IWVKAQNYYHHKVLEKIGADRIIHP........................................... 119
58 -9.830d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]}  ali model 3D-neighbors follow..  13  4DVIVIGGGPSGLMAAIGAAEEGANVLLLDKGNKLGRKLAISGGGRC-NVTNRLPLDEIVKHIPGNGRFLYSAFFENLGVKLKEEDHGRMFPVSNKAQSVVDALLTRLKDLGVKITNTPVET--IEYENGQTKAVILQTGEVLETNHVVIAVGGKSVPQTGS 173
59 -9.820d1cf2o1 c.2.1.3 (O:1-138,O:304-336) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Methanothermus fervidus [TaxId: 2180]}  ali model 3D-neighbors follow..  26  3AVAINGYGTVGKRVADAIAQQDKGYDLYVAIPERVKLFEKAGIEVAGTVDDMLDEADIVIDCTPEGIGAKNL......................................................................................... 95
60 -9.780d1edza1 c.2.1.7 (A:149-319) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Baker`s yeast (Saccharomyces cerevisiae) [TaxId: 4932]}  ali model 3D-neighbors follow..  18  31KCIVINRSIVGRPLAALLANDGATVYSVDVNNIQKHHVEDLGEYSEDLLKKCSLDSDVVITGVPSENYKFPT--------EYIKEGAVCINFACTKNFSDDVKEKASL--------VPMTGKVTIA................................... 153
61 -9.770d1lqua2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}  ali model 3D-neighbors follow..  11  4YIAIVGSGPSAFFAAASLLKADMAVDMLEMLPTP-WGLVRSGVAPDHPKIKSISKQFEKTAEDPRFRFFGNVVVGEHVQPGELSERYDAVIYAVTPGLPFDDQSGTIPNVGGRINGSPNEYVVGWIKRGPTGVIGTNKKDAQDTVDTLIKNLGNAKE.... 175
62 -9.270d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]}  ali model 3D-neighbors follow..  12  3KLAVIGAGAVGSTLAFAAAQRGIEIVLEDIAKERVESFYPTVSIDGSDDPEICRDADMVVITAGPRQ----------------KPGQSRLELVGATVNILKAIMPNLVKVAPNAIYMLITN........................................ 119
63 -9.170d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  17  13RVMLLGSGELGKEVAIECQRLGVEVIAVDRYADA-PAMHVAHRSHVINMLDGDALRRVVELEKPHYIVPEIEAIATDMLIQLEEEGLNVVPCAR................................................................... 105
64 -9.090d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]}  ali model 3D-neighbors follow..  15  6ENIIIGAGAAGLFCAAQLAKLGKSVTVFDNGKKIGRKILMSGGGFCNFTNLLSQNPHFVKSALARYTNWDFISLVAEQGITYHEKELGQLFCDEGAEQIVEMLKSECDKYGAKILRSEVSQVERIQNDEKVRFVLQVNSTQWQCKNLIVATGGLSMPGLGA 174
65 -9.070d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Methanopyrus kandleri [TaxId: 2320]}  ali model 3D-neighbors follow..  19  26TVLVVGAGEMGKTVAKSLVDRG-AVLVANRTYERAVELARD-AVRFDELVDHLARSDVVVSATAAPHPVIHVDDVREALRKRDRRSPILI----IDIANPRDVEEGVENIEDVEV.............................................. 140
66 -9.040d4ajjc1 c.2.1.0 (C:1-159) automated matches {Norway rat (Rattus norvegicus) [TaxId: 10116]}  ali model 3D-neighbors follow..  16  21KITVVGVGAVGMACAISILMKDLELALVDVIEDKLKGFLKTPKIVSSKDYSVTANSKLVIITAGARQ----------------QEGESRLNLVQRNVNIFKFIIPNVVKYSLLIVSNPVD......................................... 140
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 1 0 0   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster
Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Godzik A. Discovering new genes with advanced homology detection. Trends Biotechnol. 2002 Aug;20(8):315-6.