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Query: d2gsca1 a.29.16.1 (A:9-125) Uncharacterized protein XCC0516 {Xanthomonas campestris pv. campestris [TaxId: 340]}, from SCOP207

Results of FFAS03 search in SCOP207
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst RPHERLDAWRDSMELVEMIYRLTEVFPDQERYGLTAQLRRAAVSIPSNIAEGAARRSTPDYSRFLSIARGSLSELDTQVQIAARLGYSRSEDDQSVRRQVDLVFAKLTALMNALRRRLast
1 -80.100d2gsca1 a.29.16.1 (A:9-125) Uncharacterized protein XCC0516 {Xanthomonas campestris pv. campestris [TaxId: 340]}  ali model 3D-neighbors  100  1RPHERLDAWRDSMELVEMIYRLTEVFPDQERYGLTAQLRRAAVSIPSNIAEGAARRSTPDYSRFLSIARGSLSELDTQVQIAARLGYSRSEDDQSVRRQVDLVFAKLTALMNALRRR 117
2 -57.300d2rlda1 a.29.16.1 (A:1-115) Uncharacterized protein BT0352 {Bacteroides thetaiotaomicron [TaxId: 818]}  ali model 3D-neighbors follow..  19  3EDMKDNVVKDKSLEFAVRIVNLYKFLVNEQKFVMSKQILRSGTSIGANIREAEQAQSRADFINKLNIALKEANETEYWLELLIRTEYITREQYESINNDSTEINKLLISIIK..... 115
3 -6.480d1szia_ a.24.23.1 (A:) Mannose-6-phosphate receptor binding protein 1 (Tip47), C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}  ali model 3D-neighbors follow..  12  131................................DITQQLQSMCVALGASI-----QGLPSHVREQAQQARSQVNDLQATFSGIHSFQDLSAGVLAQTRERIARAREALDNTVEYVAQN 210
4 -5.580d2voua2 d.16.1.2 (A:164-291) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]}  ali model 3D-neighbors follow..  13  2.TYAGYVTWRGVLQPGEVADDVWNYFNDKFTYGLLDDGHLIAYPIPGRENAE------SPRLNFQWYWNVAEGPDLDELMTDVR-NSLNPHNLRQFHSKGESLFKPFRDLVLNASS. 119
5 -5.560d1g5ia1 c.51.1.1 (A:343-459) The aaRS-like accessory subunit of mitochondrial polymerase gamma, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}  ali model 3D-neighbors follow..  34.................................LLNELLENGISVWPGYSETVHSSLEQLHSKYDEMSVLFSVLVTETTLENGLIQLRSRDTTMKEMMHISKLRDFLVKYLASASN. 116
6 -5.380d1um1a1 b.36.1.1 (A:8-104) Hypothetical protein KIAA1849 {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  12  1...............................YVFTVELERGPSGLGMGLIDGMHTHLGAPGLYIQTLLPGSPAAADGRLSLGDRILEVNGSSLLGLYLRAVDLIRHGGKKMRFLVAK 87
7 -5.300d1niga_ a.25.2.1 (A:) Hypothetical protein Ta1238 {Thermoplasma acidophilum [TaxId: 2303]}  ali model 3D-neighbors follow..  19  17...........................DHVYFKFRSEIEAAEAYLGLAISEGIKVRETREILDIIDTVYNSLSDPESKL...................................... 68
8 -5.220d3ku8a_ e.11.1.1 (A:) automated matches {Escherichia coli [TaxId: 83333]}  ali model 3D-neighbors follow..  14  87......................................................................YLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIAELLRILGSA 133
9 -5.170d3c7bb4 d.58.36.2 (B:4-122) Dissimilatory sulfite reductase subunit beta, DsrB {Archaeoglobus fulgidus [TaxId: 2234]}  ali model 3D-neighbors follow..  17  59.................................LSIYTVRELCDIADKYSDGYLRWTSRNNVEFFVTDESKIDDLINEV...................................... 104
10 -5.110d3zqka_ c.62.1.0 (A:) automated matches {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  58....PFSEAQSKGDILQRLREIR-RYLSDHSFLVSQGDREQAPNLVYMVTGNPASDEIKR-IQVVPIGVGPNANVQELERIGWPNAPILIQDFETLPREAPDLVLQR.......... 175

FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 3 1 3   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Zhang Y, Stec B, Godzik A. Between order and disorder in protein structures: analysis of "dual personality" fragments in proteins. Structure. 2007 Sep;15(9):1141-7.