current user: public
If you have questions about the server, please let us know.

Query: d2gupa1 c.55.1.10 (A:1-114) Hypothetical protein SP2142 {Pneumococcus (Streptococcus pneumoniae) [TaxId: 1313]}, from SCOP207

Results of FFAS03 search in SCOP207
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110
# Score Template Links and tools%idFirst MTIATIDIGGTGIKFASLTPDGKILDKTSISTPENLEDLLAWLDQRLSEQDYSGIAMSVPGAVNQETGVIDGFSAVPYIHGFSWYEALSSYQLPVHLENDANCVGLSELLAHPELast
1 -70.000d2gupa1 c.55.1.10 (A:1-114) Hypothetical protein SP2142 {Pneumococcus (Streptococcus pneumoniae) [TaxId: 1313]}  ali model 3D-neighbors  100  1MTIATIDIGGTGIKFASLTPDGKILDKTSISTPENLEDLLAWLDQRLSEQDYSGIAMSVPGAVNQETGVIDGFSAVPYIHGFSWYEALSSYQLPVHLENDANCVGLSELLAHPE 114
2 -59.400d4htla1 c.55.1.0 (A:1-119) automated matches {Listeria monocytogenes [TaxId: 169963]}  ali model 3D-neighbors follow..  38  1MKIAAFDIGGTALKMGVVLPHGEIILTKSAEISSDGDQILAEMKVFLAETDVTGIAVSAPGYVNPKTGLITMGGAIRRFDNFNLKEWLEATGLPVAIENDANCALLAEKWLGK. 116
3 -55.700d2aa4a1 c.55.1.10 (A:1-119) N-acetylmannosamine kinase NanK {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  26  1MTTLAIDIGGTKLAAALIGADGQIRDRRELPTPQTPEALRDALSALVSPAHAQRVAIASTGIIRDGSLLALNPHNLGGLLHFPLVKTLEQTNLPTIAINDAQAAAWAEFQALD. 118
4 -50.300d2ap1a2 c.55.1.10 (A:1-117) Putative regulator protein YcfX {Salmonella typhimurium [TaxId: 90371]}  ali model 3D-neighbors follow..  26  2..YYGFDIGGTKIALGVFDSTRRLQWEKRVPTPTSYSAFLDAVCELVEEGVKGSVGIGIPGMPETEDGTLYAA-NVPAASGKPLRADLSALDRDVRLDNDANCFALSEAW.... 115
5 -48.800d3bp8a2 c.55.1.10 (A:82-210) Mlc protein {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  19  5.HYLSLRISRGEIFLALRDLSSKLVVEESQELALKLDRIISHIDQFFIRERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQTGVPVYIQHDISAWTMAEALFG.. 126
6 -48.700d2hoea3 c.55.1.10 (A:72-199) N-acetylglucosamine kinase {Thermotoga maritima [TaxId: 2336]}  ali model 3D-neighbors follow..  19  5.YVLGIEVTRDEIAACLIDASMNILAHEAHPLPSDREETLNVMYRIIDRSKLSALTVAAPGPIDTERGIIIDPRNFP-LSQIPLANLLKEYGIEVWVENDADMGAVGEKWYTKR 128
7 -48.600d3epqa1 c.55.1.10 (A:1-118) Putative fructokinase YhdR {Bacillus subtilis [TaxId: 1423]}  ali model 3D-neighbors follow..  19  2..LGGIEAGGTKFVCAVGREDGTIIDRIEFPTKMP-DETIEKVIQYFSQFSLQAIGIGSFGPVDNDKTSQTYGTPKAGWRHYPFLQTVKNMKIPVGFSTDVNAAALGEFLFGE. 116
8 -45.600d1z05a3 c.55.1.10 (A:81-208) Transcriptional regulator VC2007 {Vibrio cholerae [TaxId: 666]}  ali model 3D-neighbors follow..  23  5.QFLSMRLGRGYLTIALHELGGEVLIDTKIDIHEILARLLFEIEEFFQTDRVTSIAITLPGLVNSEQGIVLQMPHYN-VKNLALGPEIYKTGLPVFVANDTRAWALAEKLFGH. 126
9 -44.200d1woqa1 c.55.1.10 (A:11-139) Inorganic polyphosphate/ATP-glucomannokinase PPGMK {Arthrobacter sp. KM [TaxId: 184230]}  ali model 3D-neighbors follow..  24  3.PLIGIDIGGTGIKGGIVDLKKGKLLGERFRVPATPESVAEAVALVVAEAPAAGSPVGVTFPGIIQHGVVHSAANVKSWLNTDIDALLTALGRPVEVINDADAAGLAEARYG.. 125
10 -20.600d1iv0a_ c.55.3.8 (A:) Hypothetical protein, YqgF homologue {Thermus thermophilus [TaxId: 274]}  ali model 3D-neighbors follow..  16  1MRVGALDVGEARIGLAVGEEGVPLASGRGYLVRKTLEEDVEALLDFVRREGLGKLVVGLPLRTDLKESAQAGKVL-------PLVEALRARGVEVELWDE.............. 93
11 -19.500d1sz2a2 c.55.1.7 (A:3-111) Glucokinase Glk {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  14  3..ALVGDVGGTNARLALCDIASGEISQAKTYSGLDYPSLEAVIRVYLEEHEVKDGCIAIACPITGDWVAMTNHT------AFSIAEMKKNLGFSLEIINDFTAVSMA....... 105
12 -17.700d2ch5a2 c.55.1.5 (A:1-117) N-acetylglucosamine kinase, NAGK {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  15  3AIYGGVEGGGTRSEVLLVSEDGKILAEADIGTDKCVERINEMVNRAKRKVPLRSLGLSLSGGDQEDAGRILIE----------LRDRFPYLSESYLITTDAAGSIAT....... 114
13 -16.300d1zbsa2 c.55.1.5 (A:1-107) Hypothetical protein PG1100 {Porphyromonas gingivalis [TaxId: 837]}  ali model 3D-neighbors follow..  7  2..ILIGDSGSTKTDWCIAKEGKSLGRFQTSGINQDRNEIDTALRSEVLPSSIRAVYFYGAGCTPAKAPMLNEA----------LDSMLPH-CDRIEVAGDMLGAARA....... 104
14 -15.900d1nu0a_ c.55.3.8 (A:) Hypothetical protein YqgF (RuvX) {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  10  3GTLMAFDFGTKSIGVAVGQRITGTARPLPAIKAQDGTPDWNIIERLLKEWQPDEIIVGLPLNMDGTEQPLTARAR--------ANRIHGRFGVEVKLHDERLSTVEAR...... 104
15 -15.200d1vhxa1 c.55.3.8 (A:2-138) Hypothetical protein YrrK (RuvX) {Bacillus subtilis [TaxId: 1423]}  ali model 3D-neighbors follow..  16  1.RILGLDLGTKTLGVALSDEMGWTAQGIETINEAEGDYGLSRLSELIKDYTIDKIVLGFPKNMNGTVGPRGEASQ--------AKVLETTYNVPVVLWDERLTTMAAE...... 103
16 -14.700d1zc6a1 c.55.1.5 (A:8-121) Probable N-acetylglucosamine kinase CV2896 {Chromobacterium violaceum [TaxId: 536]}  ali model 3D-neighbors follow..  16  5.YLIGVDGGGTGTRIRLHASDGTPLAMAEQGIAKSWQAVLSTLEAAFQQAGLPAIGLGLSGVHNRQWAGEFESQAPGF--------------ARLSLATDGYTTLLG....... 110
17 -13.300d3bexa1 c.55.1.13 (A:1-118) Type III pantothenate kinase, CoaX {Thermotoga maritima [TaxId: 2336]}  ali model 3D-neighbors follow..  19  2..YLLVDVGNTHSVFSITE-DGKTFRRWRLSTGVTEDELFSHLHPLLGDAMREIKGIGVASVVPTQNTVIERFHISPIWVKAKNGCVKWNVKNPSEVGADRVANVVA....... 112
18 -12.600d3djca1 c.55.1.0 (A:2-122) automated matches {Legionella pneumophila [TaxId: 272624]}  ali model 3D-neighbors follow..  17  1..ILCIDVGNSHIYGGVFDGDEIKLRFRHTSKVSTSDELGIFLKSVLRENNCS--KIAICSVVPQVDYSLRSACVKYFSIDPFLLQAGVKTGLNIKYRNPVEVGA......... 106
19 -12.500d2f9wa2 c.55.1.13 (A:1-114) Type III pantothenate kinase, CoaX {Pseudomonas aeruginosa [TaxId: 287]}  ali model 3D-neighbors follow..  12  2..ILELDCGNSLIKWRVIE-GAARSVAGGLAESDDALVEQLTSQQALPVRACRLVSVRSEQETSQLVARLEQLFPVSALSGKQLAGVRNGYLDYQRLGLDRWLALVA....... 108
20 -10.900d1saza1 c.55.1.2 (A:1-172) butyrate kinase 2 {Thermotoga maritima [TaxId: 2336]}  ali model 3D-neighbors follow..  16  2FRILTINPGSTSTKLSIFEDERMVKMGRFQKILDQLEFREKIARQFVEETGYSLSSFSAFVSRGGLLDPIPGGVYL--------GLMIKTLKSGKNGEHASNLGAI........ 111
21 -10.700d3ezwa1 c.55.1.4 (A:3-253) Glycerol kinase {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  20  3.YIVALDQGTTSSRAVVMDHDANIISVSQREFEQIYATQSSTLVEVLAKADISSDQIAAIGITNQRETTIV........................................... 86
22 -10.600d2w40a1 c.55.1.0 (A:1-254) automated matches {Plasmodium falciparum [TaxId: 36329]}  ali model 3D-neighbors follow..  11  3.VILSIDQSTQSTKVFFYDEELNIVHSNNLNLYNLMNEGIKVLKDKYTSVIIKCIGITNQ-IWDRITGKPLYNAIV--WLDTRVEELVTEFSAKYNNNDIQKKTGT........ 130
23 -9.990d3f9ma1 c.55.1.0 (A:12-218) automated matches {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  15  62.DFLSLDLGGTNFRVMLVKVGEGEEGQWSVKTKHQFDYISECISDFLDKHQMKGFTFSFP-HEDIDKGILLNWTKASGAEGNNVVGLLRD----VAMVNDTVATMISCYYEDH. 207
24 -9.880d3o4wa1 c.55.1.0 (A:2-223) automated matches {Milk yeast (Kluyveromyces lactis) [TaxId: 28985]}  ali model 3D-neighbors follow..  16  80.DFLALDLGGTNLRVVLVKLGGNDTTQNKYRLPDHLKCLKEFVDEWYPDGVSEPLPLGFTFSYPASQKKINSGVLQRWTKGFDLQEQIEKLNIPIALINDTTGTLVASLY.... 219
25 -9.650d4h0oa1 c.55.1.0 (A:2-188) automated matches {Entamoeba (Entamoeba histolytica) [TaxId: 5759]}  ali model 3D-neighbors follow..  10  2.NVLIFNVGSSSLTYKVFCSDNIVCNGQIIKIETPILNHPQAAKLIIQFLKENHISIAFVGHRFVHGGSYFKKSAV----DEVVLKELKECLPLAPIHNPSSFGVI........ 124
26 -9.260d5jica1 c.55.1.14 (A:2-267) automated matches {Staphylococcus aureus [TaxId: 196620]}  ali model 3D-neighbors follow..  14  2...VGIDAGGTLIKIVQEQDNQRTFKTELTKN-------IDQVVEWLNQQQIEKLCLTGGNA----------------------GVIAENINIPAQIFVEFDAASQGLGILLKE 83
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 3 4 1   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster
Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Robinson-Rechavi M, Godzik A. Structural Genomics of Thermotoga maritima Proteins Shows that Contact Order Is a Major Determinant of Protein Thermostability. Structure (Camb). 2005 Jun;13(6):857-60.