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Query: d2hboa1 d.38.1.5 (A:12-153) Hypothetical protein CC3309 {Caulobacter crescentus [TaxId: 155892]}, from SCOP207

Results of FFAS03 search in SCOP207
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst AIPEGFSQLNWSRGFGRQIGPLFEHREGPGQARLAFRVEEHHTNGLGNCHGGMLMSFADMAWGRIISLQKSYSWVTVRLMCDFLSGAKLGDWVEGEGELISEEDMLFTVRGRIWAGERTLITGTGVFKALSARKPRPGELAYLast
1 -80.800d2hboa1 d.38.1.5 (A:12-153) Hypothetical protein CC3309 {Caulobacter crescentus [TaxId: 155892]}  ali model 3D-neighbors  100  1AIPEGFSQLNWSRGFGRQIGPLFEHREGPGQARLAFRVEEHHTNGLGNCHGGMLMSFADMAWGRIISLQKSYSWVTVRLMCDFLSGAKLGDWVEGEGELISEEDMLFTVRGRIWAGERTLITGTGVFKALSARKPRPGELAY 142
2 -51.600d1wlua_ d.38.1.5 (A:) automated matches {Thermus thermophilus HB8 [TaxId: 300852]}  ali model 3D-neighbors follow..  24  2...........RDPFMEALG-LKVLHLAPGEAVVAGEVRADHLNLHGTAHGGFLYALADSAFALASNTRG--PAVALSCRMDYFRPLGAGARVEARAVEVNLSRRTATYRVEVVSEGKLVALFTGTVFRL............ 117
3 -51.400d1zkia1 d.38.1.5 (A:4-129) Hypothetical protein PA5202 {Pseudomonas aeruginosa [TaxId: 287]}  ali model 3D-neighbors follow..  21  8...........ISAYSELVG-LDPVSLGDGVAEVRLPMAAHLRNRGGVMHGGALFSLMDVTMGLACSSGFDRQSVTLECKINYIRAVADGE-VRCVARVLHAGRRSLVVEAEVRQGDKLVAKGQGTFAQL............ 126
4 -50.800d3lbea_ d.38.1.0 (A:) automated matches {Streptococcus mutans [TaxId: 210007]}  ali model 3D-neighbors follow..  16  3............HEIRVFEN-FDMVSFEKGHVIVTTEVVDKSLNYYGFAHGGYIFTLCDQISGLVSI-STGFDAVTLQSSINYLKSGKLGDTLLIDGRCVHDGRTTKVVDVTVTNQKQEVAKATFTMFVTGKR......... 122
5 -50.400d3f5oa_ d.38.1.5 (A:) automated matches {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  21  12......KAMTKARNFERVLGKITLVSAAPGKVICEMKVEEEHTNAIGTLHGGLTATLVDNISTMALLCERGAPGVSVDMNITYMSPAKLGEDIVITAHVLKQGKTLAFTSVDLTNTGKLIAQGRHTKHL............. 137
6 -48.800d2qwza1 d.38.1.0 (A:1-138) automated matches {Silicibacter sp. [TaxId: 292414]}  ali model 3D-neighbors follow..  16  8...DGLSAYLEEVFPQIQGE-FSIDALAKGEITMRLNVQERHLRPGGTVSGPSMFALADVSVYALVLAGREALAVTTNASLDFMRKPESGRDLLGQARLLKLGRTLAVGDILLFSEEAPVARSTMTYSIPP........... 138
7 -48.200d3dkza_ d.38.1.0 (A:) automated matches {Bordetella parapertussis [TaxId: 519]}  ali model 3D-neighbors follow..  21  7...........TIPFMQLLG-VVPEHSGNGTARTRLPARADLVNSRGDIHGGTLMSVLDFTLGAAIRGDPEVGVATIDMNTSFMSPGR--GDLVIETRCLRRGASIAFCEGEIRDAGELVAKATATFKIIQ........... 125
8 -48.000d1psua_ d.38.1.5 (A:) Phenylacetic acid degradation protein PaaI {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  20  10......HAMYENDACAKALG-IDIISMDEGFAVVTMTVTAQMLNGHQSCHGGQLFSLADTAFAYACN-SQGLAAVASACTIDFLRPGFAGDTLTATAQVRHQGKQTGVYDIEIVNQQKTVALFRGKS............... 129
9 -46.700d3e29a_ d.38.1.0 (A:) automated matches {Bordetella bronchiseptica [TaxId: 518]}  ali model 3D-neighbors follow..  20  10......SRFVNRSPFNRWLG-MSVLEAGEQGIVLGIKWREELISSIRSTHGGILATLVDAAGDYAVALKTGHPVPTMDMHVDYHRVATPGD-LRAEGQVIHFGKRFATAHARVLDDGNLVASGRALYLI............. 133
10 -45.800d1ixla_ d.38.1.5 (A:) Hypothetical protein PH1136 {Pyrococcus horikoshii [TaxId: 53953]}  ali model 3D-neighbors follow..  16  4......VEQRTHKLTSRILV-GKPILIKEGYAEVELETIDEKVDEKGLVHGGFTFGLADYAAMLAVN---EPTVVLGKAEVRFTKPVKVGDKLVAKAKIIEDLGKKKIVEVKVYREEEVVLEGKFYCYVLEKH......... 127
11 -44.700d3s4ka_ d.38.1.0 (A:) automated matches {Mycobacterium tuberculosis [TaxId: 1773]}  ali model 3D-neighbors follow..  22  2.............PFDSELG-LQFTELGPDGARAQLDVRPKLLQLTGVVHGGVYCAMIESIASMAAFAGEGGSVVGVNNNTDFVRSISSGM-VYGTAEPLHRGRRQQLWLVTITDDDRVVARGQVRLQNLEARP........ 126
12 -44.500d3hdua_ d.38.1.0 (A:) automated matches {Syntrophus aciditrophicus [TaxId: 56780]}  ali model 3D-neighbors follow..  16  13......EIFEEKIPFNKIIG-LKVRFISPEQVKLSFEMRDELIGNRRMLYGGVISSAIDMTAGLAAFMAMIGRLSTMSLHVEYLRPGLGRE-FVCTGYNVRTGNKVAVIRTELMNDDELIAVGSVSYILV............ 152
13 -44.100d3e8pa_ d.38.1.0 (A:) automated matches {Shewanella oneidensis [TaxId: 70863]}  ali model 3D-neighbors follow..  17  14......EVFDQHVPFHNLLG-LDIKRYDIDGVEVAINMKPELIGNQQILHGGVTATVLDVVGGLTAFAQRLQTLGTIDMRVDYLRPGR-GQIFTGTGSVIRAGNRVSVCRMELHNEGTHIAFGTGTYMV............. 152
14 -43.900d3r32a_ d.38.1.5 (A:) automated matches {Arthrobacter sp. [TaxId: 1667]}  ali model 3D-neighbors follow..  16  17...........EQTLDGTVG-FVIDEMTPERATASVEVTDTLRQRWGLVHGGAYCALAAMLATEATVAEKGMMAVGQSNHTSFFRPVKEGH-VRAEAVRIHAGSTTWFWDVSLRDDGRLCAVSSMSIAVRPRRD........ 141
15 -43.500d4a0yb_ d.38.1.0 (B:) automated matches {Staphylococcus aureus [TaxId: 1280]}  ali model 3D-neighbors follow..  15  3.............EEQEFIGDLIQVNPNVKAQSILDITSDSVFHKTGIARGHVLFAQANSLCVALI---KQPTVLTHESSIQFIEKVKLNDTVRAEARVVNQTAKHYYVEVKSYVKHTLVFKGNFKMFYDKR.......... 118
16 -41.200d1vh5a1 d.38.1.5 (A:2-136) Hypothetical protein YdiI {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  13  16...........EGNMVGFLD-IRFEHIGDDTLEATMPVDSRTKQPFGLLHGGASVVLAESIGSVAGYLEGEQKVVGLEINANHVRSAREGR-VRGVCKPLHLGSRHQVWQIEIFDEGRLCCSSRLTTAIL............ 135
17 -39.900d1yoca1 d.38.1.5 (A:1-145) Hypothetical protein PA1835 {Pseudomonas aeruginosa [TaxId: 287]}  ali model 3D-neighbors follow..  15  20........IGQFAPYFASIA-PQFVELRPGYAEVTFPKRREVLNHIGTVHAIALCNAAELAAGTMTDAPAGHRWIPRGMTVEYLAKATGDVRAVADGSQIDWQATGNLVVPVVAYDDKPVFRAEITMYVSQA.......... 145
18 -34.900d1t82a_ d.38.1.5 (A:) Putative thioesterase SO4397 {Shewanella oneidensis [TaxId: 70863]}  ali model 3D-neighbors follow..  7  10......QTWHSTIPVSEFMQ-IAPLSFTDGELSVSAPLAP-NINLHHTMFAGSIYTIMTLTGWGMVWLNVDGDIVLADAHIRYLAPVTSAPEVKVRSPLQRGRKAKVKLEVQLFCDGKLCAQFDGLYVSVP........... 143
19 -34.800d2ov9a1 d.38.1.5 (A:7-209) Hypothetical protein RHA1_ro05818 {Rhodococcus sp. RHA1 [TaxId: 101510]}  ali model 3D-neighbors follow..  18  95....................PVVLEGLSDGSVRGTVTLTIPYQGPPGHVHGGVSALLLDHVLGVANAWG-GKAGMTAQLSTRYHRPTPLFEPLTLTGKLMSVDGRKITTAGDIRTDGQVCVSVEGLF............... 201
20 -29.300d1sh8a1 d.38.1.5 (A:1-150) Hypothetical protein PA5026 {Pseudomonas aeruginosa [TaxId: 287]}  ali model 3D-neighbors follow..  16  17.............AFVQRSG-LRAEVLEPGYVRLRMPGAG-NENHIGSMYAGALFTLAELPGGALFLTSARFYPIVKEMTLRFRRPAKAERIRQLETEAGERGKAEYSLELQLTDQGEVVAESAALYQLRSHARP....... 150
21 -28.300d4moca1 d.38.1.0 (A:7-153) automated matches {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  14  1.............................GEVVMSQAIQPAHATARGELSAGQLLKWIDTTACLAAEKHAGVSCVTASVDIQFEETARVGQVITIKAKVTRAFSTSMEISIKVMVQDKLVSVAFSTFVAKPVGKEK...... 114
22 -28.000d3bjka_ d.38.1.1 (A:) automated matches {Haemophilus influenzae [TaxId: 71421]}  ali model 3D-neighbors follow..  19  1...........................SKGVLLLRTLAMPSDTNANGDIFGGWIMSQMAMGGAILAKEIAHGRVVTVAVEMNFIKPISVGDVVCCYGQCLKVGRSSIKIKVEVWVKKYCVTDAVFTFVAVDNNGRS...... 119
23 -27.800d1vpma_ d.38.1.1 (A:) Acyl-CoA hydrolase BH0798 {Bacillus halodurans [TaxId: 86665]}  ali model 3D-neighbors follow..  19  1.....................IQSYPVERSRTIQTRLVLPPDTNHLGTIFGGKVLAYIDEIAALTAMKHANSAVVTASIDVDFKSSATVGDALELEGFVTHTGRTSMEVYVRVHSNNTLTTESFLTMVAVDESGKP...... 122
24 -27.700d2gvha1 d.38.1.1 (A:9-143) Probable acyl-CoA hydrolase AGR_L_2016 {Agrobacterium tumefaciens [TaxId: 358]}  ali model 3D-neighbors follow..  18  2........................PAQHGATTRLIDIVFPGDTNHHGTLFGGTGLALMDRVAFIAATRFGRTPFVTASCEIDFRQPARIGHIVEFTARPVKAGRRSLTVEVEMVAERQQHTCTRGIFHMVAIPEGEDAASY. 123
25 -27.400d5szva_ d.38.1.0 (A:) automated matches {Neisseria meningitidis [TaxId: 272831]}  ali model 3D-neighbors follow..  19  1.........................QLPSHELIMSELMMPDTANFSGNVHGGELLLLLDQVAYSCASRYSGNYCVTLSVDVLFKEPIHIGDLVTFYAAVNYTGRTSMEIGIRVEAQNRHTNSCYFTMVAVKDGKPVP..... 119
26 -27.000d2q2ba_ d.38.1.0 (A:) automated matches {Mouse (Mus musculus) [TaxId: 10090]}  ali model 3D-neighbors follow..  15  3........................NTVSYSQSSLIHLVGPSDCTLHGFVHGGVTMKLMDEVAGIVAARHCKTNIVTASVDINFHDKIRKGCVITISGRMTFTSNKSMEIEVLVDADPYRAASAFFTYVSLNQEGKP...... 123
27 -26.700d4moca2 d.38.1.0 (A:179-303) automated matches {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  15  1...........................RGTSVQSIELVLPPHANHHGNTFGGQIMAWMETVATISASRLCWAHPFLKSVDFKFRGPSTVGDRLVFTAIVNNTFQTCVEVGVRVEAFDRHINSAFLIYNAADDKENL...... 119
28 -25.500d2gvha2 d.38.1.1 (A:147-262) Probable acyl-CoA hydrolase AGR_L_2016 {Agrobacterium tumefaciens [TaxId: 358]}  ali model 3D-neighbors follow..  16  2...............................VTMVEIVFPDQANSAGRMFGGEAIAYMTKAAFVAASRYCGKLVVLASSEIDFARAIEIGEIVEAQAHVERVGRSSMSIQTKLWSENHITATGHFTMVAVDKDHRP...... 113
29 -25.000d2v1oa_ d.38.1.0 (A:) automated matches {Mouse (Mus musculus) [TaxId: 10090]}  ali model 3D-neighbors follow..  16  6.....................................MRPDDANVAGNVHGGTILKMIEEAGAIISTRHCNSQAALARVETDFLSPMCIGEVAHVSAEITYTSKHSVEVQVHVMSEGTKKLTNKATLWYVPLSLKNVDKVL. 120
30 -24.700d3lmba_ d.38.1.0 (A:) automated matches {Chlorobaculum tepidum [TaxId: 194439]}  ali model 3D-neighbors follow..  12  23.............PISQFMG-LEIESYDGDTLILTAPLEP-NINDKQTAFGGSLYNAAVMACWGMVYLKIACNQVVTEGNMKYIAPVYEEELANFFDHFERKGKARISLEAAIYNACVMKIEPETKPSV............. 153
31 -22.300d2q78a1 d.38.1.7 (A:1-130) Uncharacterized protein TM0581 {Thermotoga maritima [TaxId: 2336]}  ali model 3D-neighbors follow..  13  11..............................RLTEDVALDETMVWNEDIEMLDLLIGVVHRVSYELLSLPNDYTAVVVETLARHVKAVPTGTRVAVGVRVVGVVGNRVKFRGIVMSGDEKILEAEFVRAIVPREK........ 123
32 -20.300d2oafa1 d.38.1.1 (A:1-143) Hypothetical protein Jann0674 {Jannaschia sp. CCS1 [TaxId: 290400]}  ali model 3D-neighbors follow..  16  1.......................MQPRPDSAFVHDVRVTWGDCDPAKIAYTGHLPRFALEAI-YHLELDTNVGTPFVRLEMDFKSPVTPRHILKCHTWPTRLGTKSITFRVDGVQDGVTCFVGAFTCVFTIADQFKS..... 126
33 -19.600d2gf6a1 d.38.1.1 (A:1-134) Hypothetical protein SSO2295 {Sulfolobus solfataricus [TaxId: 2287]}  ali model 3D-neighbors follow..  11  1..........................MENIEYVFEDVVRIYDTDAQGIAHYAAYYRFFTNTIEKFIKENENLWFVIAESHAIYHRPVKLGDKLTVLLNPKILSNKTIKFEFKVLKDGELTTEGYVIQIAINPKIWKS..... 120
34 -19.100d2cwza1 d.38.1.7 (A:1-138) Hypothetical protein TTHA0967 {Thermus thermophilus [TaxId: 274]}  ali model 3D-neighbors follow..  15  9..............................EAVFETVVTPEMTPVHPVYATYWMVKHMELAGRKIILLEEGEEGIGSYVEARHLASALPGMRVRVVARHEKTEGNRVYARVEAYNEGDLIGVGRTEQVILPKAK........ 122
35 -18.500d2cyea1 d.38.1.1 (A:1-132) Probable thioesterase TTHA1846 {Thermus thermophilus [TaxId: 274]}  ali model 3D-neighbors follow..  19  2...........................EGFPVRVRVDVRFRDLDPLGHVNNAVFLSYMELA-RISPDWLEEGHFVVARMEVDYLRPILLGDEVFVGVRTVGLGRSSLRMEHLVTANGESAAKGLGVLVWLEGGRPAP..... 116
36 -17.900d5eo4a_ d.38.1.0 (A:) automated matches {Staphylococcus aureus [TaxId: 158878]}  ali model 3D-neighbors follow..  10  7................................THTQTVTSEFIDHNNHMHDANYNIIFSDVLSLKERENLAYTLFTLEEHTTYLSELSLGDVFTVTLYIYDYDYKRLHLFLTLTEDGTLASTNEVMMMGINQHTRRSDA... 123
37 -17.900d2oiwa1 d.38.1.1 (A:1-131) GK1870 orthologue {Bacillus stearothermophilus [TaxId: 1422]}  ali model 3D-neighbors follow..  16  3................................TTVITPRVSETDGVGHINNTTVPVWFEAGRHEIFKLFKRWRMVIIRMEVDYVNQMYYGQDVTVYTGIERIGNTSLTIYEEIHQNGVVCAKGRSVYVNFNFDTGRP..... 113
38 -17.800d2hx5a1 d.38.1.1 (A:1-144) Hypothetical protein PMT2055 {Prochlorococcus marinus [TaxId: 1219]}  ali model 3D-neighbors follow..  16  3...........................PENWLLLRRVVRFGDTDAAGVMHFHQLFRWCHESWSRKSEVTPEVALPIIHCQADFRRPIHTGDALAMELRPERLNPNSFQVHFEFRCEEQIAAHALIRHLAINAQTRHR..... 129
39 -17.800d2b3na_ d.38.1.4 (A:) Hypothetical protein AF1124 {Archaeoglobus fulgidus [TaxId: 2234]}  ali model 3D-neighbors follow..  20  78...............................................VVHGMLTTSLVSAAVARLPG-----TVVLLEQSFRYTSPVRIGDVVRVEGVVSGVEKNRYTIDVKCYTGDKVVAEGVVKVLIW............ 155
40 -17.700d1njka1 d.38.1.1 (A:1-132) Hypothetical protein YbaW {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  11  2................................QTQIKVRGYHLDVYQHVNNARYLEFLEEA-SFQWMTAHNIAFVVVNININYRRPAVLSDLLTITSQLQQLNGKSGILSQVITPEGQVVADALITFVCIDLKTQKA..... 116
41 -17.600d2hlja1 d.38.1.1 (A:1-156) Hypothetical protein PP0301 {Pseudomonas putida [TaxId: 303]}  ali model 3D-neighbors follow..  14  6................................TYRTTVQEDWVDYNGHLRDAFYLLIFSYALDADSRGQSGNSLFTLEAHINYLHEVKLGTEVWVQTQILGFDRKRLHVYHSLHGFDEVLAASEQMLLHVDLAGPQSAP... 123
42 -17.500d2egra_ d.38.1.0 (A:) automated matches {Aquifex aeolicus [TaxId: 63363]}  ali model 3D-neighbors follow..  13  3................................IYRRRVQFYETDAQGIVHHSNYFRYFEEAFPYSKMRDMGLEVVLLNAYCEYKKPLFYDDVFEVHLNLEELSRFTFTFSYIVFKEDIAVAKANTKHCMVKNGKI....... 114
43 -17.500d1z54a1 d.38.1.1 (A:1-132) Probable thioesterase TTHA0908 {Thermus thermophilus [TaxId: 274]}  ali model 3D-neighbors follow..  16  4................................VTRIKVRYAETDQMGVVHHSVYAVYLEAALPYHRVEARGVFFPVVELGLTFRAPARFGEVVEVRTRLAELSSRALLFRYRVEREGVLLAEGFTRHLCQVGERA....... 115
44 -17.200d5byud_ d.38.1.0 (D:) automated matches {Legionella pneumophila [TaxId: 272624]}  ali model 3D-neighbors follow..  13  2................................KKTFDIAWGDMDALGHVNNARYFDYFQEA-ELDIKMTGQTGPVVIHVACTFLKPIVYPATVTIHSKVNSLGNSSMIMDHDLYQEETLMAQGVSKI............... 101
45 -17.000d4k00a_ d.38.1.0 (A:) automated matches {Synechocystis sp. [TaxId: 1111708]}  ali model 3D-neighbors follow..  14  1.............................GTFTYERQVYLADTDGAGVVYFNQFLQMCHEAY-QNIISVGDFALPLVHASIDFFAPAHCGDRLLVNLTITQASAHRFCCDYEISESAQLLARAQTHHVCIALPERKK..... 120
46 -16.700d3ck1a1 d.38.1.0 (A:1-142) automated matches {Cupriavidus necator [TaxId: 264198]}  ali model 3D-neighbors follow..  17  6................................RNTVLVRFKHCDAAGIVFYPRYFEMLNDFI-DAMHGAGQAGVPTADLHCRFVAPSRLGETLTRELRVVKLGQSSFTVQVRFMPDSGLRLEVTQRLVCVDTDKIAP..... 122
47 -16.300d3hm0a_ d.38.1.0 (A:) automated matches {Bartonella henselae [TaxId: 38323]}  ali model 3D-neighbors follow..  13  1............................NAFHDFQARVYVADTDFSGVVYHARYLEFFERGRSEFLRDGEKLFFVVRHMEINFSRPAQIDNLLTIKTRISRLQGARFFMEQYILHGESMLVTAKVEIALINEE......... 118
48 -15.800d1s5ua_ d.38.1.1 (A:) Hypothetical protein YbgC {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  18  4................................RWPVRVYYEDTDAGGVVYHASYVAFYERAFSQQALMAERVAFVVRKMTVEYYAPARLDDMLEIQTEITSMRGSLVFTQRIVNAENTLLNEAEVLVVCVDPLKMKP..... 118
49 -15.500d1lo7a_ d.38.1.1 (A:) 4-hydroxybenzoyl-CoA thioesterase {Pseudomonas sp., CBS-3 [TaxId: 306]}  ali model 3D-neighbors follow..  12  5................................TMQQRIEFGDCDPAGIVWYPNYHRWLDAAS-QTVVERGIVGTPIVSCNASFVCTASYDDVLTIETCIKEWRRKSFVQRHSVSGDVQLVMRADEIRVFAMNDGER...... 125
50 -15.300d2nuja1 d.38.1.1 (A:3-161) Hypothetical protein Jann_1972 {Jannaschia sp. CCS1 [TaxId: 290400]}  ali model 3D-neighbors follow..  16  26.................................LADRVRFGELDAIGHVNHTAYLRWYESFRHVTDYGPTSPRLVLKQVHCTYLAEMGMGEDYVITGRVSNFRTTSFTMEFACWRLGECTSEGSAVVVLLNRDGSGR..... 139
51 -15.200d2o5ua2 d.38.1.1 (A:1-143) Hypothetical thioesterase PA5185 {Pseudomonas aeruginosa [TaxId: 287]}  ali model 3D-neighbors follow..  14  16.................................QPISTRWHDNDIYGHVNNVTYYAFFDTARGGLDIQGGEVIGLVVSSSCDYFAPVAFPQRIEMGLRVARLGNSSVQYELALFGQREACAAGRFVHVFVERRSSRP..... 128
52 -15.100d2owna2 d.38.1.8 (A:150-258) Putative oleoyl-ACP thioesterase LP0708 {Lactobacillus plantarum [TaxId: 1590]}  ali model 3D-neighbors follow..  9  6.........................EATDTTITKPYHVRFFDIDPNRHVNNAHYFDWLVDTLPATFLLQ-----DLVHVDVRYENEVKYGQTVTAHANILPSEVADQVTTSHLIVDDEKCCEVTIQWRTLPE.......... 109
53 -14.600d2pzha1 d.38.1.0 (A:1-132) automated matches {Helicobacter pylori [TaxId: 85962]}  ali model 3D-neighbors follow..  14  1.................................MRCRVYYEDTDSEGVVYHANYLKYCERARSEFFFKNEEGVFVIRSIKADFFTPASLGQVLEIRTQIKELRKVFVVLFQEIYCIPFKVFASEIKFGFVNRSTYSP..... 119
54 -14.100d3r87a_ d.38.1.0 (A:) automated matches {Photobacterium profundum [TaxId: 74109]}  ali model 3D-neighbors follow..  10  6................................HHPVQIYYEDTDHSGVVYHPNFLKYFERAREHVIDSDHGLGFAVYKANMIFQDGVEFAEICDIRTSFTLDGKYKTLWRQEVWGASRAAVIGDIEMVCLDKE......... 116
55 -14.000d2xema1 d.38.1.0 (A:7-148) automated matches {Micromonospora chersina [TaxId: 47854]}  ali model 3D-neighbors follow..  17  6................................VHRHVVTFDETNLVGNVYFAHYLHWQGHCPGVMAALADGLALVTVDCHADFYAEGSAFDEVEVRMMLDRLDGHRIAMSFDYVGPPTLLAQGRQTVACMRRAGHG...... 122
56 -13.800d2bi0a2 d.38.1.4 (A:186-337) Hypothetical protein Rv0216/MT0226 {Mycobacterium tuberculosis [TaxId: 1773]}  ali model 3D-neighbors follow..  15  36.........................SGAPELARLTLNIAATHHDWR-LVYGGHTIGLA---LAQATRLLPNLATVLDWESCDHTAPVHEGDTLYSELHIEHADGGVLGLRSLVYAVSDSASEPDRQVLDWRFSA........ 149
57 -13.800d1iq6a_ d.38.1.4 (A:) (R)-specific enoyl-CoA hydratase {Aeromonas caviae [TaxId: 648]}  ali model 3D-neighbors follow..  24  50...............................................IVHGMLLASLFSGLLGQQL---PGKGSIYLGQSLSFKLPVFVGDEVTAEVEVTREDKPIATLTTRIFTGGALAVTGEAVVKL............. 131
58 -13.800d1tbua1 d.38.1.3 (A:13-116) Peroxisomal long-chain acyl-CoA thioesterase 1, TES1 {Baker`s yeast (Saccharomyces cerevisiae) [TaxId: 4932]}  ali model 3D-neighbors follow..  11  28................................................TFGGTLVSQS-----LASLHTVPLNFFPTSLHSYFIKGGDPRTKITYHVQNLRNGRNFIHKQVSAYQHDKLIFTSMILFAV............. 104
59 -13.300d3qy3a1 d.38.1.1 (A:5-134) Hypothetical protein PA2801 {Pseudomonas aeruginosa [TaxId: 287]}  ali model 3D-neighbors follow..  10  5................................TAHIPVRWGDMDSYGHVNNTLYFQYLEEARVAWFETGAAEGPVVLQSLHTYLKPVVHPATVVVELYAGRLGTSSLVLEHRLHDPQGTYGEGHCKLVWVRHAENRS..... 118
60 -13.300d2c2ia1 d.38.1.4 (A:2-150) Hypothetical protein Rv0130 {Mycobacterium tuberculosis [TaxId: 1773]}  ali model 3D-neighbors follow..  12  59...............................................IAHGFMTLALLPRLQHQMYTVKGVKLAINYGLKVRFPAPVPVGSRVRATSSLVGVEDLTVSTTVEVEGSAKPACVAESIVRYV............ 149
61 -13.200d2owna1 d.38.1.8 (A:3-149) Putative oleoyl-ACP thioesterase LP0708 {Lactobacillus plantarum [TaxId: 1590]}  ali model 3D-neighbors follow..  13  10................................SEQHRITYYECDRTGRATLTTLIDIAVLALTTEMVQSHGVGWVVTQYAIDITRMPRQDEVVTIAVRGSAYNPYFAYREFWIRDDGQQLAYITSIWVMMSQTTRRI..... 124
62 -13.000d2essa1 d.38.1.8 (A:1-149) Acyl-ACP thioesterase {Bacteroides thetaiotaomicron [TaxId: 818]}  ali model 3D-neighbors follow..  13  1........................MSEENKIGTYQFVAEPFHVDFNGRLTMGVLGNHLLNCFGIATLNEDNYTWVLSRLAIELDEMPYQYEKFSVQTWVENVYRLFTDRNFAVIDDGKKIGYARSVWAMINLNTRKP..... 123
63 -12.900d1c8ua1 d.38.1.3 (A:2-115) Thioesterase II (TesB) {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  13  33................................................VFGGQVVGQA-----YAAKETVPEERLVHSFHSYFLRPGDSKKPIIYDVETLRDGNSFSARRVAAIQNGKPIFYMTASFQAPEA.......... 112
64 -12.800d2bi0a1 d.38.1.4 (A:8-185) Hypothetical protein Rv0216/MT0226 {Mycobacterium tuberculosis [TaxId: 1773]}  ali model 3D-neighbors follow..  11  8.....FDDLSKGQVFDWAPGVTLSLGLAAAHQSIVGNRLRLALDSD-LAHPGLVCDV---AIGQSTLATQRVKANLFYRGLRFHRFPAVGDTLYTRTEVVGLRANAGLRMTTIDRTDRLVLDFYRCAMLPASPDWKPGAVP. 161
65 -12.500d2essa2 d.38.1.8 (A:150-247) Acyl-ACP thioesterase {Bacteroides thetaiotaomicron [TaxId: 818]}  ali model 3D-neighbors follow..  11  3.........................KVTSNQPVATLTAKYSDIDINGHVNSIRYIEHILDLFPIELYQTK----RIRRFEMAYVAESYFGDELSFFCDEVSENEFHVEVK---KNGSEVVCRSKVIFE.............. 98
66 -12.000d5buwa_ d.38.1.0 (A:) automated matches {Yersinia pestis [TaxId: 632]}  ali model 3D-neighbors follow..  17  50.........................................HFPGKPIFPGVLILEAMAQATGILAFKSRGKLFAGID-EARFKRPVVPGDQMIMEVEFVKERRGLTRFTGVAKVDGEIVCTATMMCAR............. 143
67 -12.000d1pn2a2 d.38.1.4 (A:152-275) 2-enoyl-coa hydratase domain of multifunctional peroxisomal hydratase-dehydrogenase-epimerase {Yeast (Candida tropicalis) [TaxId: 5482]}  ali model 3D-neighbors follow..  10  35...................................LHIDPNFAKGAKILHGMCTYGLSAKALIDKF-------GMFNEIKARFTGIVFPGETLRVLAWK--ESDDTIVFQTHVVDRGTIAINNAAI................ 120
68 -12.000d1q6wa_ d.38.1.4 (A:) Monoamine oxidase regulatory protein {Archaeoglobus fulgidus [TaxId: 2234]}  ali model 3D-neighbors follow..  17  32...............................AYLTADFFPLHTDVE-IAQGMLVLSIALGMVDQVILSNYDVSSVIAFFDVRFLRPVFIGDTIAASAEVVDEKSGVVTYKLEVKNQRGELVLTALYSALIRKTP........ 151
69 -11.200d4ffua1 d.38.1.0 (A:1-148) automated matches {Sinorhizobium meliloti [TaxId: 266834]}  ali model 3D-neighbors follow..  12  58...............................................IAHGTMIFSIG---VGLTASLINPVAFSYGYDRLRFVRPVHIGDTIRTRVTIARPGAGRVVERCEVINQRGEVVLAADHILIVERKP........ 148
70 -9.730d1c8ua2 d.38.1.3 (A:116-286) Thioesterase II (TesB) {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  16  78...............................................RVHQYLLGYASDLNFLPVALQPHGIGIATIDHSMWFHRPFNLNEWLLYSVESTSASSARGFVRGEFYTQDGVLVASTVQEGVMRNHN........ 171
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Plewczynski D, Tkacz A, Wyrwicz LS, Godzik A, Kloczkowski A, Rychlewski L. Support-vector-machine classification of linear functional motifs in proteins. J Mol Model 2006 Aug;12(4):453-61. Epub 2005 Dec 10.