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Query: d2i4ia3 c.37.1.0 (A:168-406) automated matches {Human (Homo sapiens) [TaxId: 9606]}, from SCOP207

Results of FFAS03 search in SCOP207
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst VEATGNNCPPHIESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGLast
1 -121.000d2i4ia3 c.37.1.0 (A:168-406) automated matches {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors  100  1VEATGNNCPPHIESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVG 239
2 -102.000d3iuya1 c.37.1.0 (A:213-439) automated matches {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  37  7.SGEKRLIPKPTCRFKDAQQYPDLLKSIIRVGILKPTPIQSQAWPIILQGIDLIVVAQTGTGKTLSYLMPGFIHLDSQPISR------------EQRNGPGMLVLTPTRELALHVEAECSKYSY-KGLKSICIYGGRNRNGQIEDISKGVDIIIATPGRLNDLQMNNSVNLRSITYLVIDEADKMLDMEFEPQIRKILLDV----RPDRQTVMTSATWPDTVRQLALSYLKDPMIVYV. 227
3 -101.000d5gvra_ c.37.1.0 (A:) automated matches {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  36  1ILVEGDGIPPPIKSFKEMKFPAAILRGLKKKGIHHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPVIMFCLEQEKRLPF----------SKREGPYGLIICPSRELARQTHGILEYYCRSPLLRCALCIGGMSVKEQMETIRHGVHMMVATPGRLMDLLQKKMVSLDICRYLALDEADRMIDMGFEGDIRTIFSYF----KGQRQTLLFSATMPKKIQNFAKSALVKPVTINVG 231
4 -94.200d3dkpa1 c.37.1.0 (A:139-378) automated matches {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  30  11IHVQGTDLPDPIATFQQLKINSRLLQNILDAGFQMPTPIQMQAIPVMLHGRELLASAPTGSGKTLAFSIPILMQLKQPA-----------------NKGFRALIISPTRELASQIHRELIKISEGTGFRIHMIHKAAVAAKKFGKSSKKFDILVTTPNRLIYLLKQDGIDLASVEWLVVDESDKLFETGFRDQLASIFLAC---TSHKVRRAMFSATFAYDVEQWCKLNLDNVISVSIG 239
5 -83.700d3bera_ c.37.1.0 (A:) automated matches {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  39  10........EEETKTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALLETP------------------QRLFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPHIIIATPGRLIDHLENTKFNLRALKYLVMDEADRILNMDFETEVDKILKVIP----RDRKTFLFSATMTKKVQKLQRAALKNPVKCAVS 219
6 -81.300d4ct4b1 c.37.1.0 (B:95-301) automated matches {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  29  2............NEFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERL------------------DLKKDNIQAMVIVPTRELALQVSQICIQVSKHMGAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEADKLLSQDFVQIMEDIILTLP----KNRQILLYSATFPLSVQKFMNSHLQKPYEINL. 206
7 -81.100d3mwja_ c.37.1.0 (A:) automated matches {Thermus thermophilus [TaxId: 262724]}  ali model 3D-neighbors follow..  37  2.............EFKDFPLKPEILEALHGRGLTTPTPIEAAALPLALEGKDLIGQARTGTGKTLAFALPIAERLAPSQ---------------ERGRKPRALVLTPTRELALQVASELTAVAPH--LKVVAVYGGTGYGKQKEALLRGADAVVATPGRALDYLRQGVLDLSRVEVAVLDEADEMLSMGFEEEVEALLSATP----PSRQTLLFSATLPSWAKRLAERYMKNPVLINVI 206
8 -80.900d1q0ua_ c.37.1.19 (A:) Probable DEAD box RNA helicase YqfR {Bacillus stearothermophilus [TaxId: 1422]}  ali model 3D-neighbors follow..  30  1............TQFTRFPFQPFIIEAIKTLRFYKPTEIQERIIPGALRGESMVGQSQTGTGKTHAYLLPIMEKI------------------KPERAEVQAVITAPTRELATQIYHETLKITKDRMIVARCLIGGTDKQKALEKLNVQPHIVIGTPGRINDFIREQALDVHTAHILVVDEADLMLDMGFITDVDQIAARMP----KDLQMLVFSATIPEKLKPFLKKYMENPTFVHV. 208
9 -79.800d2z0ma1 c.37.1.0 (A:1-192) automated matches {Sulfolobus tokodaii [TaxId: 111955]}  ali model 3D-neighbors follow..  37  1...................MNEKIEQAIREMGFKNFTEVQSKTIPLMLQGKNVVVRAKTGSGKTAAYAIPILEL------------------------GMKSLVVTPTRELTRQVASHIRDIGRYMDTKVAEVYGGMPYKAQINRV-RNADIVVATPGRLLDLWSKGVIDLSSFEIVIIDEADLMFEMGFIDDIKIILAQTS----NRKITGLFSATIPEEIRKVVKDFITNYEEIEAC 191
10 -79.400d1qdea_ c.37.1.19 (A:) Initiation factor 4a {Baker`s yeast (Saccharomyces cerevisiae) [TaxId: 4932]}  ali model 3D-neighbors follow..  30  3.....TNYDKVVYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRI------------------DTSVKAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGL-RDAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEADEMLSSGFKEQIYQIFTLLP----PTTQVVLLSATMPNDVLEVTTKFMRNPVRILV. 212
11 -76.600d1t6na_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  31  1............SGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQL------------------EPVTGQVSVLVMCHTRELAFQISKEYERFSKYMNVKVAVFFGGLSIKKDEEVLKKNCHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLELDMRRDVQEIFRMTP----HEKQVMMFSATLSKEIRPVCRKFMQDPMEIFV. 207
12 -76.000d2pl3a1 c.37.1.0 (A:47-278) automated matches {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  33  19........VNEITRFSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLEALYRLQW--------------TSTDGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERI-NNINILVCTPGRLLQHMDETVFHATDLQMLVLDEADRILDMGFADTMNAVIENLP----KKRQTLLFSATQTKSVKDLARLSLKNPEYVWV. 230
13 -74.900d2oxca_ c.37.1.0 (A:) automated matches {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  27  1............ADFESLLLSRPVLEGLRAAGFERPSPVQLKAIPLGRCGLDLIVQAKSGTGKTCVFSTIALDSL------------------VLENLSTQILILAPTREIAVQIHSVITAIGIKMGLECHVFIGGTPLSQDKTRL-KKCHIAVGSPGRIKQLIELDYLNPGSIRLFILDEADKLLEEGFQEQINWIYSSLP----ASKQMLAVSATYPEFLANALTKYMRDPTFVRL. 205
14 -69.700d3peya1 c.37.1.0 (A:91-286) automated matches {Baker`s yeast (Saccharomyces cerevisiae) [TaxId: 4932]}  ali model 3D-neighbors follow..  30  1...........AKSFDELGLAPELLKGIYAMKFQKPSKIQERALPLLLHNRNMIAQSQSGTGKTAAFSLTMLTRV------------------NPEDASPQAICLAPSRELARQTLEVVQEMGKFTKITSLIVPDSFEKNKQI-----NAQVIVGTPGTVLDLMRRKLMQLQKIKIFVLDEADNMLDQGLGDQCIRVKRFLP----KDTQLVLFSATFADAVRQYAKKIV......... 196
15 -55.400d1gkub1 c.37.1.16 (B:6-250) Helicase-like "domain" of reverse gyrase {Archaeoglobus fulgidus [TaxId: 2234]}  ali model 3D-neighbors follow..  17  2AAAAAAAAAAALCLFPEDFLLKEFVE-FFRKCVGEPRAIQKMWAKRILRKESFAATAPTGVGKTSFGLAMSLFLALK---------------------GKRCYVIFPTSLLVIQAAETIRKYAEKAGVGTENLHGRIPKREKFMQNLRNFKIVITTTQFLSKHYR----ELGHFDFIFVDDVDAILKLGFHYDLKTKSWVG----EARGCLMVSTATAKKGKKAELFRQLLNF...... 224
16 -26.700d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]}  ali model 3D-neighbors follow..  18  9..................SISSYAVGILKEEGIEELFPPQAEAVEKVFSGKNLLLAMPTAAGKTLLAEMAMVREAIKGGK---------------------SLYVVPLRALAGEKYESFKKWE-KIGLRIGISTGDYESRDEH----GDCDIIVTTSEKADSLIRNRASWIKAVSCLVVDEIHLLDSEKRGATLEILVTKMRR-MNKALRVIGLSATAP-NVTEIAE............ 190
17 -20.900d1oywa2 c.37.1.19 (A:1-206) RecQ helicase domain {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  19  22...............................GYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLL--------------------------LTVVVSPLISLMKDQVDQLQA----NGVAAACLNSTQTREQQLEVMTGQIRLLYIAPERLMLDNFLEHLAHWNPVLLAVDEAHCISQWGFRPEYAALGQLRQR---PTLPFMALTATADDTTRQDIVRLLG........ 197
18 -20.300d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]}  ali model 3D-neighbors follow..  20  4................................RRDLIQPRIYQEVIYAKCTNCLIVLPTGLGKTLIAMMIAEYRLTKYGG--------------------KVLMLAPTKPLVLQHAESFRRLF-NLPPEKIVALTGEKSPEERSKAWARAKVIVATPQTIENDLLAGRISLEDVSLIVFDEAHRAVNYAYVFIAREYKRQAKNP-----LVIGLTAS-PEKIMEVINNLGIEHIEYR.. 188
19 -19.700d1rifa_ c.37.1.23 (A:) DNA helicase UvsW {Bacteriophage T4 [TaxId: 10665]}  ali model 3D-neighbors follow..  15  113..................................EPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLENYEG---------------------ILIIVPTTALTTQMADDFVDYRLFSHAMIKKIGGGASKDDKYKNDAP---VVVGTWQTVVKQPKE----FSQFGMMMNDECHLATGKSISSIISGLNNC--------MFKFGLSGSLRDG.................. 265
20 -16.800d1yksa1 c.37.1.14 (A:187-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]}  ali model 3D-neighbors follow..  19  1.............................................MLKKGMTTVLDFHPGAGKTRRFLPQILAECARR--------------------RLRTLVLAPTRVVLSEMKEAFHGLDVKFHTQAF------------AHGSGREVIDAMCHATLTYRMLEP-TRVVNWEVIIMDEAHFLDPASI--AARGWAAH--RARANESATILMTATPP.................... 138
21 -14.000d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]}  ali model 3D-neighbors follow..  21  3............................................AVPQSFQVAHLHAPTGSGKSTK--VPAAYA----------------------AQGYKVLVLNPSVAATLGF---GAYMSKAHGVDPNIRTGVRTI--------TGSPITYSTYGKF---LADGGCSGGAYDIIICDECDATSILGIGTVLDQ------AETAGARLVVLATAT...................... 135
22 -13.400d2fz4a1 c.37.1.19 (A:24-229) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]}  ali model 3D-neighbors follow..  19  70..................................SLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAI------------------------NELSTPTLIVVPTLALAEQWKERLGIFG------------EEYVGEFSGRIKELKPLTVST---YDSAYVNAEKLGNRFMLLIFDEVHHLPAESYVQIAQMS---------IAPFRLGLTAT...................... 204
23 -13.000d1gm5a3 c.37.1.19 (A:286-549) RecG helicase domain {Thermotoga maritima [TaxId: 2336]}  ali model 3D-neighbors follow..  20  85....................................TNAQKRAHQEIRNDMNRLLQGDVGSGKTVVAQLAILDNYEA---------------------GFQTAFMVPTSILAIQHYRRTVESFSKFNIHVALLIGATTPSEKKSGLRNGIDVVIGTHALIQE-----DVHFKNLGLVIIDEQHR-----FGVKQREALMNKGKMV----DTLVMSATIPRSM................. 246
24 -12.000d2eyqa3 c.37.1.19 (A:546-778) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  20  55..................................ETTPDQAQAINAVLSDMDRLVCGDVGFGKTEVAMRAAFLAVD---------------------NHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQLAEVAEGIDILIGTHKLL-----QSDVKFKDLGLLIVDEEHR-FGVRHKERIKAMVDILTLTATPIPRTLNMAMSGMRDLSIIA............. 232
25 -11.300d3kx2a1 c.37.1.19 (A:1-270) Pre-mRNA splicing factor DEAH RNA helicase Prp43 {Baker`s yeast (Saccharomyces cerevisiae) [TaxId: 559292]}  ali model 3D-neighbors follow..  20  82.........................KYVDILKIRRELPVRDEFLKLYQNNQIMVFVGETGSGKTTQ--IPQFVLFDEMP----------------HLENTQVACTQPRRVAAMSV---AQRVAEEMDVKL-----GEEVGYSIRKTSNKTILKYMTDGMLLREAMEDH-DLSRYSCIILDEAERTLATDILMGLLKQV----VKRRPDLKIIIMSATL--DAEKFQRYFNDAPLLAVPG 269
26 -10.900d5y4za1 c.37.1.14 (A:178-481) automated matches {Zika virus (strain mr 766) [TaxId: 64320]}  ali model 3D-neighbors follow..  16  5............................................SMLKKKQLTVLDLHPGAGKTRRVLPEIVREAIKKRLR--------------------TVILAPTRVVAAEMEEALRG--------------RYMTTAVNVTHSGTEIVDLMCHATFTSRLLQPI-RVPNYNLNIMDEASSIAARGYISTRVE---------MGEAAAIFMTATPPGTRDAFPDS........... 152
27 -9.430d5x7ka_ c.37.1.0 (A:) automated matches {Serratia marcescens [TaxId: 615]}  ali model 3D-neighbors follow..  19  35..............................................IQPGDVLGIIGPSASGKST--LARLLVGIWPVSEGIVRLDNADIYQWNKDELGPYIGYLPQDIELAGTIAENIARFNDIDSEKVIEAAKLAGVHELILRFPNGYDSVIGNGGAGLSGGQKQRIGLARALYVVLDEPNSNLDDAGEKALNQAIMFL----KQRNKTVVLITHRTNLLSMTSKLLLLV....... 220
28 -9.170d4q7ka_ c.37.1.0 (A:) automated matches {Thermotoga maritima [TaxId: 243274]}  ali model 3D-neighbors follow..  18  4..............................................VKPGSLVAVLGETGSGKTLMNLIPRLIDPERGRVEVDELDVRT-------------VKLKDLRGHISAVPQETVLFSGT--IKENLKWGREDATDDIISLPEGYDSRVERGGRNFSGGQKQRLSIARAKVLILDDCTSSVDPITEKRILDGLKRY----TKGCTTFIITQKIPTALLADKILVLHEGKVAGFG 197
29 -9.010d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}  ali model 3D-neighbors follow..  14  10...............................AYDDSEQILRDISFEAQPNSIIAFAGPSGGGKTIFSLLERFYQPTAGEITIDGQPIDN-------------ISLENWRSQIGFVSQDSAIM--AGTIRENLTYG-AFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAKILMLDEATASLDSESESMVQKALDSL----MKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSG 219

FFAS is supported by the NIH grant R01-GM087218-01
1 4 6 1 4 9   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster

Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Friedberg I, Nika K, Tautz L, Saito K, Cerignoli F, Friedberg I, Godzik A, Mustelin T. Identification and characterization of DUSP27, a novel dual-specific protein phosphatase. FEBS Lett. 2007 May 29;581(13):2527-33. Epub 2007 Apr 30.