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Query: d2itka2 d.26.1.1 (A:51-163) Mitotic rotamase PIN1, domain 2 {Human (Homo sapiens) [TaxId: 9606]}, from SCOP207

Results of FFAS03 search in SCOP207
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst EPARVRCSHLLVKHSQSRRPSSWRQEKITRTKEEALELINGYIQKIKSGEEDFESLASQFSDCSSAKARGDLGAFSRGQMQKPFEDASFALRTGEMSGPVFTDSGIHIILRTELast
1 -83.200d2itka2 d.26.1.1 (A:51-163) Mitotic rotamase PIN1, domain 2 {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors  100  1EPARVRCSHLLVKHSQSRRPSSWRQEKITRTKEEALELINGYIQKIKSGEEDFESLASQFSDCSSAKARGDLGAFSRGQMQKPFEDASFALRTGEMSGPVFTDSGIHIILRTE 113
2 -69.300d2mnta_ d.26.1.0 (A:) automated matches {Trypanosoma brucei [TaxId: 999953]}  ali model 3D-neighbors follow..  34  1.PTERHFYHVLVKHKDVRRPSSLAPRNKGEKITRSRADAINLAQAILASLDEFVQVVRDFSECGSAKRDGDLGMVESGTYTEGFDTVAFSLKSGEVSAPVETELGVHLIYRVE 120
3 -66.200d2jzva1 d.26.1.0 (A:140-245) automated matches {Staphylococcus aureus [TaxId: 1280]}  ali model 3D-neighbors follow..  29  1..DSKKASHILIKVKSKKSDKE------GLDDKEAKQKAEEIQKEVSKDPSKFGEIAKKESMDTSAKKDGELGYVLKGQTDKDFEKALFKLKDGEVSEVVKSSFGYHIIKADK 106
4 -60.500d4g2pa1 d.26.1.0 (A:280-386) automated matches {Salmonella enterica [TaxId: 588858]}  ali model 3D-neighbors follow..  29  2SVTEVHARHILLKPSPIM------------NDQQARLKLEEIAADIKSGKTTFAAAAKEYSQDPSANQGGDLGWATPDIFDPAFRDALTKLHKGQISAPVHSSFGWHLIELLD 103
5 -59.400d1jnsa_ d.26.1.1 (A:) Parvulin 10 (rotamase C) {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  37  2..KTAAALHILV---------------------KEEKLALDLLEQIKNG-ADFGKLAKKHSICPSGKRGGDLGEFRQGQMVPAFDKVVFSCPVLEPTGPLHTQFGYHIIKVLY 90
6 -59.300d2pv1a_ d.26.1.1 (A:) Porin chaperone SurA, PPIase domains {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  22  2...ELNLSHILIPLPENPTSDQ---------VNEAESQARAIVDQARNG-ADFGKLAIAHSADQQALNGGQMGWGRIQELPGIFAQALSTAKKGDIVGPIRSGVGFHILKVND 101
7 -51.800d3ui4a1 d.26.1.1 (A:36-131) automated matches {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  36  1..NAVKVRHILC---------------------EKHGKIMEAMEKLKSG-MRFNEVAAQYSEDKA-RQGGDLGWMTRGSMVGPFQEAAFALPVSGMDKPVKTKFGYHIIMVEG 94
8 -50.500d2kgja1 d.26.1.0 (A:1-94) automated matches {Escherichia coli [TaxId: 83333]}  ali model 3D-neighbors follow..  23  2QPQRTRYSIIQT---------------------KTEDEAKAVLDELNKG-GDFAALAKEKSADISARNGGDMGWLEDATIPDELKNAGL-KEKGQLSGVIKSSVGFLIVRLDD 92
9 -7.640d2b5dx1 a.8.3.3 (X:415-528) Alpha-amylase AmyC {Thermotoga maritima [TaxId: 2336]}  ali model 3D-neighbors follow..  14  5.........................................IYRHLHEMIERMIDLSKKYYNSSDPLVERVLNQMLRELFLAQSSDWAFIMTTRTSVQYAENRTKLHI..... 71
10 -6.200d1oqva_ d.24.1.2 (A:) Toxin-coregulated pilus subunit TcpA {Vibrio cholerae [TaxId: 666]}  ali model 3D-neighbors follow..  11  1........................DSQNMTKAAQSLNSIQVALTQTYRGLGNYPATADATAASKLTSGLVSLGKISSDEAKNPFIGTNMNIFSFPRNAAANKAFAISV..... 84
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Plewczynski D, Rychlewski L, Ye Y, Jaroszewski L, Godzik A. Integrated web service for improving alignment quality based on segments comparison. BMC Bioinformatics. 2004 Jul 22;5(1):98.