current user: public

If you have questions about the server, please let us know.

Query: d2ix2b2 d.131.1.0 (B:127-245) automated matches {Sulfolobus solfataricus [TaxId: 2287]}, from SCOP207

Results of FFAS03 search in SCOP207
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .
# Score Template Links and tools%idFirst EFPFKAQLLTITFADIIDELSDLGEVLNIHSKENKLYFEVIGDLSTAKVELSTDNGTLLEASGADVSSSYGMEYVANTTKMRRASDSMELYFGSQIPLKLRFKLPQEGYGDFYIAPRADLast
1 -65.700d2ix2b2 d.131.1.0 (B:127-245) automated matches {Sulfolobus solfataricus [TaxId: 2287]}  ali model 3D-neighbors  100  1EFPFKAQLLTITFADIIDELSDLGEVLNIHSKENKLYFEVIGDLSTAKVELSTDNGTLLEASGADVSSSYGMEYVANTTKMRRASDSMELYFGSQIPLKLRFKLPQEGYGDFYIAPRAD 119
2 -62.100d1ud9a2 d.131.1.2 (A:127-245) Proliferating cell nuclear antigen (PCNA) {Sulfolobus tokodaii [TaxId: 111955]}  ali model 3D-neighbors follow..  21  1EFDIKATINASGLKNAIGEIAEVADTLLISGNEEKVVVKGEGENKVEVEFSKDTGSLADIEFNKESSSAYDVEYLNDIISLTKLSDYVKVAFADQKPMQLEFNMEGGGKVTYLLAPKLS 119
3 -58.700d1u7ba2 d.131.1.2 (A:127-255) Proliferating cell nuclear antigen (PCNA) {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  22  6EYSCVVKMPSGEFARICRDLSHIGDAVVISCAKDGVKFSASGELGNGNIKLSQTSEAVTIEMNEPVQLTFALRYLNFFTKATPLSSTVTLSMSADVPLVVEYKIADMGHLKYYLAPKI. 129
4 -57.500d3ifva2 d.131.1.2 (A:113-243) Proliferating cell nuclear antigen (PCNA) {Haloferax volcanii [TaxId: 2246]}  ali model 3D-neighbors follow..  16  14DLAANIVLEGTHLDRGIKAADMVSDHIRLRVDGAEETFHIEAEGDTDDVDLSLPPADLISIEAGAADSLFSLDYLKDMNKAIPTDAEVTVELGEEFPVKLHYQIAEGGTITYMLAPR.. 131
5 -57.000d1rwza2 d.131.1.2 (A:123-244) Proliferating cell nuclear antigen (PCNA) {Archaeoglobus fulgidus [TaxId: 2234]}  ali model 3D-neighbors follow..  18  4ELPAKIVMDAGEFKKAIAAADKISDQVIFRSDKEGFRIEAKGDVDSIVFHMTETELIEF--NGGEARSMFSVDYLKEFCKVAGSGDLLTIHLGTNYPVRLVFELVGGAKVEYILAPRIE 121
6 -57.000d1iz5a2 d.131.1.2 (A:126-246) Proliferating cell nuclear antigen (PCNA) {Pyrococcus furiosus [TaxId: 2261]}  ali model 3D-neighbors follow..  20  4PFTAKVVVLGEVLKAAVKAASLVSDSIKFIARENEFIMKAEGETQEVEIKLTLEDEGLDIEVQEETKSAYGVSYLSDMVKGLGKADEVTIKFGNEMPMQMEYYIRDEGRLTFLLAPR.. 121
7 -56.100d1plqa2 d.131.1.2 (A:127-258) Proliferating cell nuclear antigen (PCNA) {Baker`s yeast (Saccharomyces cerevisiae) [TaxId: 4932]}  ali model 3D-neighbors follow..  21  6QYDSTLSLPSSEFSKIVRDLSQLSDSINIMITKETIKFVADGDIGSGSVIIKPFVDMIKLEMDQPVDLTFGAKYLLDIIKGSSLSDRVGIRLSSEAPALFQFDLKS-GFLQFFLAPKFN 129
8 -53.100d3p91a2 d.131.1.0 (A:128-254) automated matches {Entamoeba (Entamoeba histolytica) [TaxId: 5759]}  ali model 3D-neighbors follow..  22  6QSDAIITLSSAEFLKITKDFSALGDDITIGCTKNEVTLTTKGAMCETCMTLSALENGLQIEHNKDVTASFALKQISEFAKSAPLADNVKLSLSGQAPLIMEFKGEA-CVLKFYLAPKF. 127
9 -17.700d3p91a1 d.131.1.0 (A:1-127) automated matches {Entamoeba (Entamoeba histolytica) [TaxId: 5759]}  ali model 3D-neighbors follow..  10........EAALFKRVVESLKSTIDKTNFDCSDAGIAVQCMDNSHVSLVSLLETDAFDEFQCLKPITLGINLTHLSKILKALDNDCGLILDVKKVDDAVLSITSEGTNKTMKFGLNLVD 121
10 -17.300d3ifva1 d.131.1.2 (A:2-112) Proliferating cell nuclear antigen (PCNA) {Haloferax volcanii [TaxId: 2246]}  ali model 3D-neighbors follow..  18  2....KAIVSAATLRDALDSVSVLVDECKIRLNEESLSIRAVDPANVGMVDLTLDAAAFESYEAHGGVIGVNLSRLEEVAGMAGAGDLIHLTLDEE........................ 92
11 -17.000d3aixa1 d.131.1.0 (A:1-126) automated matches {Sulfolobus tokodaii [TaxId: 273063]}  ali model 3D-neighbors follow..  12  4.....KVIDADAFSYIFRTLEEFIDEITLDFTSDGLKIRGIDPSRVTFIDILPAGYFEEYNVEKEEKVGVKLEDFTDVLKTVTKNDSLYLETDENQNIKVTLDGVYERTFTFPSTPNLN 125
12 -16.700d1rwza1 d.131.1.2 (A:1-122) Proliferating cell nuclear antigen (PCNA) {Archaeoglobus fulgidus [TaxId: 2234]}  ali model 3D-neighbors follow..  15  3....DVIMTGELLKTVTRAIVALVSEARIHFLEKGLHSRAVDPANVAMVIVDPKDSFEVYNIDEEKTIGVDMDRIFDISKSISTKDLVELIVEDESTLKVKFG................ 102
13 -16.000d1iz5a1 d.131.1.2 (A:2-120) Proliferating cell nuclear antigen (PCNA) {Pyrococcus furiosus [TaxId: 2261]}  ali model 3D-neighbors follow..  15  8........GAKEFAQLIDTASKLIDEAAFKVTEDGISMRAMDPSRVVLIDLNPSSIFSKYEVVEPETIGVNLDHLKKILKRGKAKDTLILKKGEENFLEITI---QGTATRTFRVPLID 116
14 -15.900d1ud9a1 d.131.1.2 (A:1-119) Proliferating cell nuclear antigen (PCNA) {Sulfolobus tokodaii [TaxId: 111955]}  ali model 3D-neighbors follow..  11  7........DVRDLKAIIQALLKLVDEALFDIKPEGIQLVAIDKAHISLIKIELPKEMFKEDVPEEFKFGFNTQYMSKLLKAAKRKEEIIIDADSPEVVKLTL---SGALNRVFNVNNIE 115
15 -15.800d1u7ba1 d.131.1.2 (A:1-126) Proliferating cell nuclear antigen (PCNA) {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  12  8........QGSILKKVLEALKDLINEACWDISSSGVNLQSMDSSHVSLVQLTLRSEGFDTRCDRNLAMGVNLTSMSKILKCAGNEDIITLRAEDNA-LALVFEAPNQEKVSDYEMKLMD 120
16 -15.700d1plqa1 d.131.1.2 (A:1-126) Proliferating cell nuclear antigen (PCNA) {Baker`s yeast (Saccharomyces cerevisiae) [TaxId: 4932]}  ali model 3D-neighbors follow..  17  8........EASLFKRIIDGFKDCVQLVNFQCKEDGIIAQAVDDSRVLLVSLEIGVEAFQERCDHPVTLGMDLTSLSKILRCGNNTDTLTLIADNTP-IILLFEDTKKDRIAEYSLKLMD 120
17 -14.000d5w7za3 d.131.1.0 (A:249-379) automated matches {Rickettsia conorii [TaxId: 272944]}  ali model 3D-neighbors follow..  16  7SSSSKLVINRKMFADSIERIAIITVEVKLSLSRETLEISAVGARGNAKEVINDKESFYEYNSDESLAIGFNPQYLEDVLKAVK-SDVVELYFSDVSAPVLIKFPENPKDIFVVMPVKV. 131
18 -12.000d1vpka3 d.131.1.1 (A:244-366) DNA polymerase III, beta subunit {Thermotoga maritima [TaxId: 2336]}  ali model 3D-neighbors follow..  12  7TFKTKVVVSRKELRESLKRVMVIASKVKFEIEENVMRLVSKSDYGEVVDEVEVQ------KEGEDLVIAFNPKFIEDVLKHIE-TEEIEMNFVDSTSPCQINPLDISGYLYIVMPIRL. 122
19 -12.000d4k3la3 d.131.1.1 (A:245-365) DNA polymerase III, beta subunit {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  7NPDKHLEAGCDLLKQAFARAAILSNEVRLYVSENQLKITANNPEQE-----EAEEILDVTYSGAEMEIGFNVSYVLDVLNALK-CENVRMMLTDSVSSVQIEDAASQSAA-YVVMP... 119
20 -11.900d5wcea3 d.131.1.0 (A:251-372) automated matches {Caulobacter crescentus [TaxId: 190650]}  ali model 3D-neighbors follow..  10  7DNAKILTLDNDLFAKAVDRVATISAEVKLAVEPGRITLTVRNMEAG-----QAVEEVEVDYDGEPFEIGFNARYLLDVCGQIA-GPQAEFRFADPASPTLVVDPVDPGVKYVLMPLRV. 122

FFAS is supported by the NIH grant R01-GM087218-01
1 4 3 9 1 0   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster

Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Grynberg M, Godzik A. NERD: a DNA processing-related domain present in the anthrax virulence plasmid, pXO1. Trends Biochem Sci. 2004 Mar;29(3):106-10.