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Query: d2jn9a1 b.45.3.1 (A:3-97) Uncharacterized protein YkvR {Bacillus subtilis [TaxId: 1423]}, from SCOP207

Results of FFAS03 search in SCOP207
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .
# Score Template Links and tools%idFirst KTLRLNNVTLEMAAYQEESEPKRKIAFTLNVTSETYHDIAVLLYEKTFNVEVPERDLAFRGEMTNYSTSLTNLYEPGAVSEFYIEITEIDKNADSLast
1 -65.200d2jn9a1 b.45.3.1 (A:3-97) Uncharacterized protein YkvR {Bacillus subtilis [TaxId: 1423]}  ali model 3D-neighbors  100  1KTLRLNNVTLEMAAYQEESEPKRKIAFTLNVTSETYHDIAVLLYEKTFNVEVPERDLAFRGEMTNYSTSLTNLYEPGAVSEFYIEITEIDKNADS 95
2 -5.250d3hn3a2 b.1.4.1 (A:226-328) beta-Glucuronidase {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  9  3....IDDITVTTS-----EQDSGLVNYQISVKGSNLFKLEVRLLDAENKVVANGTGTQGQLKVPGVSLWWPYLMHERPAYLYSLEVQLTAQTSLG 89
3 -5.190d1v05a_ b.1.18.10 (A:) Filamin C {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  15  40.MVGVHGPKTPCEEVYVKHMGNRVYNVTYTVKEKGDYILIVKVPGSPFKVKVP.......................................... 96
4 -5.050d1e8ca3 c.72.2.1 (A:104-337) UDP-N-acetylmuramyl tripeptide synthetase MurE {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  14  57.....SAVDVQHELAGLVDQGATFCAMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDMEHYEAAKWLLYSEHHCGQAIINADD....... 139
5 -4.830d2iqia1 c.51.6.2 (A:32-209) Hypothetical protein XCC0632 {Xanthomonas campestris pv. campestris [TaxId: 340]}  ali model 3D-neighbors follow..  16  104.............DYAGQSLPAATIELNAKLLHSS----QRVVASRTFTVARPSSSTDTAAVAAAFEQALTQVTTE................... 163
6 -4.810d2yrba1 b.7.1.1 (A:595-737) Fantom {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  8  45......DFELQTTPVVRGLHPEYNFTSQYLVHVND--LFLQYIQKNTITLEVHQAYSTEYETIAACQLKFHEILEKSGRIFCTASLIGTKGDIPN 131
7 -4.710d1bkra_ a.40.1.1 (A:) beta-spectrin {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  12  54................KKSNAHYNLQNAFNLAEQHL-GLTKLLDPEDISVDHPDEK-----SIITYVVTYYHYFSK................... 107
8 -4.680d1b35b_ b.121.4.1 (B:) Insect picorna-like virus coat proteins {Cricket paralysis virus [TaxId: 12136]}  ali model 3D-neighbors follow..  14  111........................LVVKVQVNSQPFQQGRLMLQYIPYAQYMPNRVTLINETLQGRSGCPRTDLELSVGTEVEMRI......... 172
9 -4.610d2jdia3 c.37.1.11 (A:95-379) Central domain of alpha subunit of F1 ATP synthase {Cow (Bos taurus) [TaxId: 9913]}  ali model 3D-neighbors follow..  9  160...........GEYFRDNGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKMNDAFGGGSLTALPVIETQAGDVSA. 242
10 -4.560d2a90a2 d.289.1.1 (A:132-211) Deltex (Dx) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}  ali model 3D-neighbors follow..  15  17..................................PYNMHVQSIIEDAWARGEQTLDLSNTHIGLPYTINFSNLTQLRQPSGPMRSIRRTQQ.... 73
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 0 6 0   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Damiano JS, Stehlik C, Pio F, Godzik A., Reed JC. CLAN, a novel human CED-4-like gene. Genomics. 2001 Jul;75(1-3):77-83.