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Query: d2jzva1 d.26.1.0 (A:140-245) automated matches {Staphylococcus aureus [TaxId: 1280]}, from SCOP207

Results of FFAS03 search in SCOP207
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst DSKKASHILIKVKSKKSDKEGLDDKEAKQKAEEIQKEVSKDPSKFGEIAKKESMDTGSAKKDGELGYVLKGQTDKDFEKALFKLKDGEVSEVVKSSFGYHIIKADKLast
1 -77.800d2jzva1 d.26.1.0 (A:140-245) automated matches {Staphylococcus aureus [TaxId: 1280]}  ali model 3D-neighbors  100  1DSKKASHILIKVKSKKSDKEGLDDKEAKQKAEEIQKEVSKDPSKFGEIAKKESMDTGSAKKDGELGYVLKGQTDKDFEKALFKLKDGEVSEVVKSSFGYHIIKADK 106
2 -66.200d2itka2 d.26.1.1 (A:51-163) Mitotic rotamase PIN1, domain 2 {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  29  3ARVRCSHLLVKHSQSRRPSSTRTKEEALELINGYIQKIKSGEEDFESLASQFSDCS-SAKARGDLGAFSRGQMQKPFEDASFALRTGEMSGPVFTDSGIHIILRTE 113
3 -64.300d4g2pa1 d.26.1.0 (A:280-386) automated matches {Salmonella enterica [TaxId: 588858]}  ali model 3D-neighbors follow..  37  4TEVHARHILLKPSPIMND------QQARLKLEEIAADIKSGKTTFAAAAKEYSQDPGSANQGGDLGWATPDIFDPAFRDALTKLHKGQISAPVHSSFGWHLIELLD 103
4 -61.000d2mnta_ d.26.1.0 (A:) automated matches {Trypanosoma brucei [TaxId: 999953]}  ali model 3D-neighbors follow..  26  2TERHFYHVLVKHKDVRRPSSLAPRNKAQAILAQHKERKTWSLDEFVQVVRDFSECG-SAKRDGDLGMVESGTYTEGFDTVAFSLKSGEVSAPVETELGVHLIYRVE 120
5 -58.400d2pv1a_ d.26.1.1 (A:) Porin chaperone SurA, PPIase domains {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  27  2.ELNLSHILIPLPENPTSDQV---NEAESQARAIVDQA-RNGADFGKLAIAHSADQ-QALNGGQMGWGRIQELPGIFAQALSTAKKGDIVGPIRSGVGFHILKVND 101
6 -58.100d1jnsa_ d.26.1.1 (A:) Parvulin 10 (rotamase C) {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  33  2KTAAALHILV---------------KEEKLALDLLEQI-KNGADFGKLAKKHSICP-SGKRGGDLGEFRQGQMVPAFDKVVFSCPVLEPTGPLHTQFGYHIIKVLY 90
7 -55.400d2kgja1 d.26.1.0 (A:1-94) automated matches {Escherichia coli [TaxId: 83333]}  ali model 3D-neighbors follow..  25  4QRTRYSIIQT---------------KTEDEAKAVLDEL-NKGGDFAALAKEKSADIISARNGGDMGWLEDATIPDELKNAGL-KEKGQLSGVIKSSVGFLIVRLDD 92
8 -53.800d3ui4a1 d.26.1.1 (A:36-131) automated matches {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  30  1NAVKVRHILC---------------EKHGKIMEAMEKL-KSGMRFNEVAAQYSEDKAR--QGGDLGWMTRGSMVGPFQEAAFALPVSGMDKPVKTKFGYHIIMVEG 94
9 -5.810d2b5dx1 a.8.3.3 (X:415-528) Alpha-amylase AmyC {Thermotoga maritima [TaxId: 2336]}  ali model 3D-neighbors follow..  11  5.................................IYRHLHEMIERMIDLSKKYYNSSDPLVE---LNQMLRELFLAQSSDWAFIMTTRTSVQYAENRTKLHIKRFLN 76
10 -5.680d3ni6a_ d.26.1.0 (A:) automated matches {Plasmodium vivax [TaxId: 5855]}  ali model 3D-neighbors follow..  14  15.......VVKTILRKGEGGEENAPKKGNEVTVHYVGKLESSGKVFDS----------SRERNVPFKFLGQGEVIKGWDICVASMTKNEKCSVLDSKYGY....... 98

FFAS is supported by the NIH grant R01-GM087218-01
1 4 0 5 8 1   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Friedberg I. and Godzik A Connecting the Protein Structure Universe by Using Sparse Recurring Fragments. Structure (Camb.) (2005) Aug;13(8):1213-24