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Query: d2odma_ a.23.6.0 (A:) automated matches {Staphylococcus aureus [TaxId: 196620]}, from SCOP207

Results of FFAS03 search in SCOP207
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80
# Score Template Links and tools%idFirst ATMKNAALKQLTKDADEILHLIKVQLDNLTLPSCPLYEEVLDTQMFGLQKEVDFAVKLGLVDREDGKQIMLRLEKELSKLHEALast
1 -63.000d2odma_ a.23.6.0 (A:) automated matches {Staphylococcus aureus [TaxId: 196620]}  ali model 3D-neighbors  100  1ATMKNAALKQLTKDADEILHLIKVQLDNLTLPSCPLYEEVLDTQMFGLQKEVDFAVKLGLVDREDGKQIMLRLEKELSKLHEA 83
2 -58.000d2gboa1 a.23.6.1 (A:1-82) Hypothetical protein EF2458 {Enterococcus faecalis [TaxId: 1351]}  ali model 3D-neighbors follow..  35  4GISKKFAIQLLEDDAERIKMLIRNQKNSLCISQCKAFEEVVDTQMYGFSRQVTYATRLGILTNDEGHRLLSDLERELNQ.... 82
3 -6.670d2igia_ c.55.3.5 (A:) Oligoribonuclease {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  15  9.......................................WIDLEMTGLDPERDRIIEIATLVTDANLNILAEGPTIAVHQSDE 52
4 -5.960d4kb1a_ c.55.3.5 (A:) automated matches {Escherichia coli [TaxId: 83333]}  ali model 3D-neighbors follow..  18  14.......................................VIDVETAGFNAKTDALLEIAAITLKMDEQGWLMPDTTLHFHVE. 56
5 -5.870d1fjgt_ a.7.6.1 (T:) Ribosomal protein S20 {Thermus thermophilus [TaxId: 274]}  ali model 3D-neighbors follow..  21  42.....................................AEEALKIMRKAESLIDKAAKGSTLHKNAAARRKSRLMRKVRQLLEA 87
6 -5.830d2qalt1 a.7.6.1 (T:2-86) Ribosomal protein S20 {Escherichia coli [TaxId: 562]}  ali model 3D-neighbors follow..  18  42.....................................KAAAQKAFNEMQPIVDRQAAKGLIHKNKAARHKANLTAQINKL... 84
7 -5.480d1st6a3 a.24.9.1 (A:253-371) Vinculin {Chicken (Gallus gallus) [TaxId: 9031]}  ali model 3D-neighbors follow..  15  44....EQAIRQILDEAGKAGELCAGKERREILGTCKTLGQMTD--------QLADLRARGQGATPMAMQKAQQVSQGLDLLTAK 114
8 -5.300d3fiaa_ a.39.1.0 (A:) automated matches {Human (Homo sapiens) [TaxId: 9606]}  ali model 3D-neighbors follow..  18  45.........................QSGLPQPVLAQIWALADMNNDGRMDQVEFSIAMKLIKKLQGYQLPSALPPVMK..... 98
9 -5.190d2inwa1 d.110.8.1 (A:4-120) Hypothetical protein YeeU {Shigella flexneri [TaxId: 623]}  ali model 3D-neighbors follow..  16  1.............................TLPGTTPPDDNHDRPWWGLPCTVTPCFGARLVQEGNRLHYLADRAGIRGRFSDV 54
10 -5.020d1k28a3 d.2.1.3 (A:130-345) Tail-associated lysozyme gp5, catalytic domain {Bacteriophage T4 [TaxId: 10665]}  ali model 3D-neighbors follow..  13  106SITMEEATTLFERDLADMQRDIKS-----HSKVGPVWQAVNRSRQMAL---ENMAFQMGVGGVAKFNTMLTAMLAG....... 173

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Pio F, Pawlowski K, Godzik A. Saturated BLAST: an automated multiple intermediate sequence search used to detect distant homology. Bioinformatics. 2000 Dec;16(12):1105-10.